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CmoCh04G014890 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G014890
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTranscriptional activator DEMETER like
Genome locationCmo_Chr04:7631622..7633067
RNA-Seq ExpressionCmoCh04G014890
SyntenyCmoCh04G014890
Gene Ontology termsGO:0006284 - base-excision repair (biological process)
GO:0006306 - DNA methylation (biological process)
GO:0006349 - regulation of gene expression by genetic imprinting (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0080111 - DNA demethylation (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0043078 - polar nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity (molecular function)
GO:0019104 - DNA N-glycosylase activity (molecular function)
GO:0035514 - DNA demethylase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR044811 - DNA glycosylase, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008446781.1 PREDICTED: transcriptional activator DEMETER isoform X1 [Cucumis melo]1.8e-0991.67Show/hide
Query:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGE
        GFVCVRGFDQKTRAPRPLIARLHFPASKLAK  NG+
Subjt:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGE
XP_011655842.1 protein ROS1A isoform X1 [Cucumis sativus]1.8e-0991.67Show/hide
Query:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGE
        GFVCVRGFDQKTRAPRPLIARLHFPASKLAK  NG+
Subjt:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGE
XP_022956584.1 transcriptional activator DEMETER-like isoform X1 [Cucurbita moschata]3.1e-0994.29Show/hide
Query:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNG
        GFVCVRGFDQKTRAPRPLIARLHFPASKLAK  NG
Subjt:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNG
XP_023518039.1 transcriptional activator DEMETER-like isoform X1 [Cucurbita pepo subsp. pepo]1.8e-0989.19Show/hide
Query:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGEK
        GFVCVRGFDQKTRAPRPLIARLHFPASKLAK  NG +
Subjt:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGEK
XP_038893266.1 transcriptional activator DEMETER-like isoform X1 [Benincasa hispida]3.1e-0994.29Show/hide
Query:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNG
        GFVCVRGFDQKTRAPRPLIARLHFPASKLAK  NG
Subjt:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNG
TrEMBL top hitse value%identityAlignment
A0A061FPP2 DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase, putative isoform 31.9e-0967.92Show/hide
Query:  YKGIRTQCEKMITLIIGFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGEK
        +KG+ T+ E       GFVCVRGFDQKTRAPRPL+ARLHFPASKLAK  N  K
Subjt:  YKGIRTQCEKMITLIIGFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGEK
A0A0A0KTG6 ENDO3c domain-containing protein8.7e-1091.67Show/hide
Query:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGE
        GFVCVRGFDQKTRAPRPLIARLHFPASKLAK  NG+
Subjt:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGE
A0A1S3BGJ5 transcriptional activator DEMETER isoform X18.7e-1091.67Show/hide
Query:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGE
        GFVCVRGFDQKTRAPRPLIARLHFPASKLAK  NG+
Subjt:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGE
A0A6J1GZH0 transcriptional activator DEMETER-like isoform X11.5e-0994.29Show/hide
Query:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNG
        GFVCVRGFDQKTRAPRPLIARLHFPASKLAK  NG
Subjt:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNG
A0A6J1KCN5 transcriptional activator DEMETER-like isoform X11.5e-0994.29Show/hide
Query:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNG
        GFVCVRGFDQKTRAPRPLIARLHFPASKLAK  NG
Subjt:  GFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNG
SwissProt top hitse value%identityAlignment
B8YIE8 Protein ROS1C8.1e-0551.06Show/hide
Query:  YKGIRTQCEKMITLIIGFVCVRGFDQKTRAPRPLIARLHFPASKLAK
        +KG+ T+ E       GFVCVRGF+ +TRAPRPL    H  ASKL +
Subjt:  YKGIRTQCEKMITLIIGFVCVRGFDQKTRAPRPLIARLHFPASKLAK
C7IW64 Protein ROS1A6.0e-0859.57Show/hide
Query:  YKGIRTQCEKMITLIIGFVCVRGFDQKTRAPRPLIARLHFPASKLAK
        +KG+ T+ E       GFVCVRGFD+ +RAPRPL ARLHFPASK+ +
Subjt:  YKGIRTQCEKMITLIIGFVCVRGFDQKTRAPRPLIARLHFPASKLAK
Q8LK56 Transcriptional activator DEMETER5.4e-0993.1Show/hide
Query:  GFVCVRGFDQKTRAPRPLIARLHFPASKL
        GFVCVRGF+QKTRAPRPL+ARLHFPASKL
Subjt:  GFVCVRGFDQKTRAPRPLIARLHFPASKL
Q9SJQ6 DNA glycosylase/AP lyase ROS13.5e-0886.21Show/hide
Query:  GFVCVRGFDQKTRAPRPLIARLHFPASKL
        G+VCVRGFD+KTR P+PLIARLHFPASKL
Subjt:  GFVCVRGFDQKTRAPRPLIARLHFPASKL
Arabidopsis top hitse value%identityAlignment
AT2G36490.1 demeter-like 12.5e-0986.21Show/hide
Query:  GFVCVRGFDQKTRAPRPLIARLHFPASKL
        G+VCVRGFD+KTR P+PLIARLHFPASKL
Subjt:  GFVCVRGFDQKTRAPRPLIARLHFPASKL
AT5G04560.1 HhH-GPD base excision DNA repair family protein3.9e-1093.1Show/hide
Query:  GFVCVRGFDQKTRAPRPLIARLHFPASKL
        GFVCVRGF+QKTRAPRPL+ARLHFPASKL
Subjt:  GFVCVRGFDQKTRAPRPLIARLHFPASKL
AT5G04560.2 HhH-GPD base excision DNA repair family protein3.9e-1093.1Show/hide
Query:  GFVCVRGFDQKTRAPRPLIARLHFPASKL
        GFVCVRGF+QKTRAPRPL+ARLHFPASKL
Subjt:  GFVCVRGFDQKTRAPRPLIARLHFPASKL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATTGATAAAATGGAGATGAAAAGAACTAAGGCTCGCCTGACCACAGCTCATCTCATAATAGACTTCCGCAAACCAAACCAATCACTGAGTTTTTTTATATGCCT
TCATAACATGGTCTCTCTACATGCTCATGAGTATTTAGAAGAAACATACAAAGGAATTCGTACCCAATGTGAGAAGATGATCACCTTGATAATTGGCTTTGTTTGTGTCA
GAGGATTTGATCAGAAAACCCGGGCACCACGACCTCTGATTGCTAGATTGCACTTTCCAGCAAGCAAGCTAGCCAAGTATATGAATGGTGAAAAGTTGAAAATTGCATCT
GTTACAGAGAAAAATGAATGCCAGATCAATATAAGTCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTATTGATAAAATGGAGATGAAAAGAACTAAGGCTCGCCTGACCACAGCTCATCTCATAATAGACTTCCGCAAACCAAACCAATCACTGAGTTTTTTTATATGCCT
TCATAACATGGTCTCTCTACATGCTCATGAGTATTTAGAAGAAACATACAAAGGAATTCGTACCCAATGTGAGAAGATGATCACCTTGATAATTGGCTTTGTTTGTGTCA
GAGGATTTGATCAGAAAACCCGGGCACCACGACCTCTGATTGCTAGATTGCACTTTCCAGCAAGCAAGCTAGCCAAGTATATGAATGGTGAAAAGTTGAAAATTGCATCT
GTTACAGAGAAAAATGAATGCCAGATCAATATAAGTCAGTGA
Protein sequenceShow/hide protein sequence
MAIDKMEMKRTKARLTTAHLIIDFRKPNQSLSFFICLHNMVSLHAHEYLEETYKGIRTQCEKMITLIIGFVCVRGFDQKTRAPRPLIARLHFPASKLAKYMNGEKLKIAS
VTEKNECQINISQ