; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G015090 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G015090
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionglycine-rich RNA-binding protein GRP1A-like
Genome locationCmo_Chr04:7729066..7733271
RNA-Seq ExpressionCmoCh04G015090
SyntenyCmoCh04G015090
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601227.1 hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sororia]5.0e-4999.09Show/hide
Query:  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL
        ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL
Subjt:  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL

Query:  AAIVHLHLVF
        AAI HLHLVF
Subjt:  AAIVHLHLVF

XP_022957462.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]1.7e-49100Show/hide
Query:  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL
        ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL
Subjt:  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL

Query:  AAIVHLHLVF
        AAIVHLHLVF
Subjt:  AAIVHLHLVF

XP_022987217.1 glycine-rich protein DOT1-like [Cucurbita maxima]1.2e-2973.22Show/hide
Query:  RRRRTEMALILMLLCSSMVASFAFKQLFTTDIAEFQESEHREKYGKNGVVIPMRIVSILGGGGGSGGGGSGGGGRGGGGGGSSGGGSGGGGGRGGGGGSP
        RRRR EMALILMLL SSMVASFAFKQLFTTDIAEFQESEHREKYGKNGVVIPM IV  LGGGGGSGGGG G                             
Subjt:  RRRRTEMALILMLLCSSMVASFAFKQLFTTDIAEFQESEHREKYGKNGVVIPMRIVSILGGGGGSGGGGSGGGGRGGGGGGSSGGGSGGGGGRGGGGGSP

Query:  GGGRGGGGGSPGGGRGGGGGSSGGGRGGGGGGSAGGGSGGSGGGSAGGGSGGGGGGSEGGGRVGRGGAHSGTGNWHQNSMSHI
            G GGGS GGGRGGGGGS G GRGGGGGGSAGGGSGG GGGS GGGS GGGGGSEGGGR GRGGAHSGTGNWHQNSM  I
Subjt:  GGGRGGGGGSPGGGRGGGGGSSGGGRGGGGGGSAGGGSGGSGGGSAGGGSGGGGGGSEGGGRVGRGGAHSGTGNWHQNSMSHI

XP_022987717.1 uncharacterized protein LOC111485159 [Cucurbita maxima]2.7e-4796.36Show/hide
Query:  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL
        E NYHQKTNAEKHG+DGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGR RNAGNHYENNMGLLVASVL
Subjt:  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL

Query:  AAIVHLHLVF
        AAI HLHLVF
Subjt:  AAIVHLHLVF

XP_023517064.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]5.0e-4999.09Show/hide
Query:  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL
        ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL
Subjt:  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL

Query:  AAIVHLHLVF
        AAI HLHLVF
Subjt:  AAIVHLHLVF

TrEMBL top hitse value%identityAlignment
A0A6J1GZ71 glycine-rich RNA-binding protein GRP1A-like8.3e-50100Show/hide
Query:  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL
        ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL
Subjt:  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL

Query:  AAIVHLHLVF
        AAIVHLHLVF
Subjt:  AAIVHLHLVF

A0A6J1J9S2 glycine-rich protein DOT1-like5.6e-3073.22Show/hide
Query:  RRRRTEMALILMLLCSSMVASFAFKQLFTTDIAEFQESEHREKYGKNGVVIPMRIVSILGGGGGSGGGGSGGGGRGGGGGGSSGGGSGGGGGRGGGGGSP
        RRRR EMALILMLL SSMVASFAFKQLFTTDIAEFQESEHREKYGKNGVVIPM IV  LGGGGGSGGGG G                             
Subjt:  RRRRTEMALILMLLCSSMVASFAFKQLFTTDIAEFQESEHREKYGKNGVVIPMRIVSILGGGGGSGGGGSGGGGRGGGGGGSSGGGSGGGGGRGGGGGSP

Query:  GGGRGGGGGSPGGGRGGGGGSSGGGRGGGGGGSAGGGSGGSGGGSAGGGSGGGGGGSEGGGRVGRGGAHSGTGNWHQNSMSHI
            G GGGS GGGRGGGGGS G GRGGGGGGSAGGGSGG GGGS GGGS GGGGGSEGGGR GRGGAHSGTGNWHQNSM  I
Subjt:  GGGRGGGGGSPGGGRGGGGGSSGGGRGGGGGGSAGGGSGGSGGGSAGGGSGGGGGGSEGGGRVGRGGAHSGTGNWHQNSMSHI

A0A6J1JB47 uncharacterized protein LOC1114851591.3e-4796.36Show/hide
Query:  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL
        E NYHQKTNAEKHG+DGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGR RNAGNHYENNMGLLVASVL
Subjt:  ESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMGLLVASVL

Query:  AAIVHLHLVF
        AAI HLHLVF
Subjt:  AAIVHLHLVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGAAGAAGAAGAACAGAGATGGCGTTGATTTTGATGCTGCTTTGTTCCTCTATGGTGGCTTCTTTTGCTTTCAAACAACTTTTCACAACAGATATTGCTGAATT
TCAAGAAAGTGAGCATAGGGAGAAGTATGGTAAAAATGGCGTTGTAATCCCAATGCGCATAGTTAGTATACTTGGTGGCGGAGGAGGATCCGGCGGAGGAGGATCCGGCG
GAGGAGGTCGTGGTGGCGGTGGAGGAGGATCGTCAGGAGGAGGTAGTGGTGGCGGAGGAGGACGTGGTGGCGGAGGTGGATCCCCAGGAGGAGGACGTGGTGGCGGAGGT
GGATCCCCAGGAGGAGGACGTGGTGGCGGAGGAGGATCCTCAGGAGGAGGTCGTGGCGGTGGCGGAGGAGGATCCGCAGGAGGAGGTAGTGGCGGCAGCGGAGGAGGATC
GGCAGGAGGAGGTAGTGGTGGCGGAGGAGGAGGATCAGAAGGAGGAGGTCGTGTTGGGAGAGGAGGAGCTCACTCTGGCACAGGAAATTGGCATCAGAACTCCATGAGCC
ACATACAGAAGGATCTAGATCACACAAAACCCACCTGTTTCTATTACTATGGGAAGAAGAAGGGAGCTAACCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCAT
TTCATCTGCTCTCCAGCAACAAATCCTCCCAACAGTTTCTATATGTATGCAGAGTCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCAAGGATGGTGTCACTAA
CCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCTCAAGGGATTGGTCATGGAAGTGCCGCCGGCGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAG
GAGGCGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGAACGCGCAATGCAGGAAATCACTATGAAAACAACATGGGG
CTTCTGGTAGCTTCAGTTTTGGCTGCCATTGTTCATCTCCATTTAGTTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGAAGAAGAAGAACAGAGATGGCGTTGATTTTGATGCTGCTTTGTTCCTCTATGGTGGCTTCTTTTGCTTTCAAACAACTTTTCACAACAGATATTGCTGAATT
TCAAGAAAGTGAGCATAGGGAGAAGTATGGTAAAAATGGCGTTGTAATCCCAATGCGCATAGTTAGTATACTTGGTGGCGGAGGAGGATCCGGCGGAGGAGGATCCGGCG
GAGGAGGTCGTGGTGGCGGTGGAGGAGGATCGTCAGGAGGAGGTAGTGGTGGCGGAGGAGGACGTGGTGGCGGAGGTGGATCCCCAGGAGGAGGACGTGGTGGCGGAGGT
GGATCCCCAGGAGGAGGACGTGGTGGCGGAGGAGGATCCTCAGGAGGAGGTCGTGGCGGTGGCGGAGGAGGATCCGCAGGAGGAGGTAGTGGCGGCAGCGGAGGAGGATC
GGCAGGAGGAGGTAGTGGTGGCGGAGGAGGAGGATCAGAAGGAGGAGGTCGTGTTGGGAGAGGAGGAGCTCACTCTGGCACAGGAAATTGGCATCAGAACTCCATGAGCC
ACATACAGAAGGATCTAGATCACACAAAACCCACCTGTTTCTATTACTATGGGAAGAAGAAGGGAGCTAACCTTGATGTTCTTGCTGTTTTGTTCTACCATACCAGCCAT
TTCATCTGCTCTCCAGCAACAAATCCTCCCAACAGTTTCTATATGTATGCAGAGTCAAATTACCACCAGAAAACTAATGCAGAAAAACATGGCAAGGATGGTGTCACTAA
CCGGATTAGCAGCATATACAGTGCAAGGGCAATCACCGTTTCTCAAGGGATTGGTCATGGAAGTGCCGCCGGCGGCGGAGAAAATGGTGGTGGCGGTAGACCTCAAGCAG
GAGGCGGAGGTGCGGCCGTAATCCCTGTTTATGCCGCTGGTTCGGCACAAGCACATCATCGCCAAGGTCGAACGCGCAATGCAGGAAATCACTATGAAAACAACATGGGG
CTTCTGGTAGCTTCAGTTTTGGCTGCCATTGTTCATCTCCATTTAGTTTTCTGA
Protein sequenceShow/hide protein sequence
MERRRRTEMALILMLLCSSMVASFAFKQLFTTDIAEFQESEHREKYGKNGVVIPMRIVSILGGGGGSGGGGSGGGGRGGGGGGSSGGGSGGGGGRGGGGGSPGGGRGGGG
GSPGGGRGGGGGSSGGGRGGGGGGSAGGGSGGSGGGSAGGGSGGGGGGSEGGGRVGRGGAHSGTGNWHQNSMSHIQKDLDHTKPTCFYYYGKKKGANLDVLAVLFYHTSH
FICSPATNPPNSFYMYAESNYHQKTNAEKHGKDGVTNRISSIYSARAITVSQGIGHGSAAGGGENGGGGRPQAGGGGAAVIPVYAAGSAQAHHRQGRTRNAGNHYENNMG
LLVASVLAAIVHLHLVF