CuGenDBv2

Gene ID	CmoCh04G015110
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	ribonuclease H2 subunit A-like isoform X2
Genome location	Cmo_Chr04:7732704..7734782
RNA-Seq Expression	CmoCh04G015110
Synteny	CmoCh04G015110
Gene Ontology terms	GO:0016070 - RNA metabolic process (biological process) GO:0044249 - cellular biosynthetic process (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:1901576 - organic substance biosynthetic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0043167 - ion binding (molecular function)
InterPro domains	IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6601228.1 Ribonuclease H2 subunit A, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-59

97.52

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Query:  MSLRTSFDFLPIVEFLHMNLKDLFLFQYAIGSISEPMIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDC
        MSLRTSFDFLPIVEFLHMNLKDLFLFQYAIGSISE MIYGRLYCG FYSKGNAEEQREEPAMFL SQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDC
Subjt:  MSLRTSFDFLPIVEFLHMNLKDLFLFQYAIGSISEPMIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDC

Query:  CCSYVKALPSLNLADSKTLKE
        CCSYVKALPSLNLADSKTLKE
Subjt:  CCSYVKALPSLNLADSKTLKE

XP_022957463.1 uncharacterized protein LOC111458856 isoform X1 [Cucurbita moschata]

1.2e-63

100

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Query:  MSLRTSFDFLPIVEFLHMNLKDLFLFQYAIGSISEPMIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDC
        MSLRTSFDFLPIVEFLHMNLKDLFLFQYAIGSISEPMIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDC
Subjt:  MSLRTSFDFLPIVEFLHMNLKDLFLFQYAIGSISEPMIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDC

Query:  CCSYVKALPSLNLADSKTLKE
        CCSYVKALPSLNLADSKTLKE
Subjt:  CCSYVKALPSLNLADSKTLKE

XP_022957464.1 ribonuclease H2 subunit A-like isoform X2 [Cucurbita moschata]

1.2e-42

100

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Query:  MIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE
        MIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE
Subjt:  MIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE

XP_022987954.1 uncharacterized protein LOC111485320 isoform X1 [Cucurbita maxima]

1.3e-57

93.39

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Query:  MSLRTSFDFLPIVEFLHMNLKDLFLFQYAIGSISEPMIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDC
        M+LRTS DFLPIVEF HMNLKDLFLFQYAIGSISEPMIYGRLYCG FYSKGNAEE REEPAMFLWSQSP ELRGLV+WMTVDEAGRVLVLGPVAYGYSDC
Subjt:  MSLRTSFDFLPIVEFLHMNLKDLFLFQYAIGSISEPMIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDC

Query:  CCSYVKALPSLNLADSKTLKE
         CSYVKALPSLNLADSKTLKE
Subjt:  CCSYVKALPSLNLADSKTLKE

XP_022988037.1 ribonuclease H2 subunit A-like isoform X2 [Cucurbita maxima]

2.4e-38

94.12

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Query:  MIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE
        MIYGRLYCG FYSKGNAEE REEPAMFLWSQSP ELRGLV+WMTVDEAGRVLVLGPVAYGYSDC CSYVKALPSLNLADSKTLKE
Subjt:  MIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE

TrEMBL top hits

e value

%identity

Alignment

A0A068TUI8 Ribonuclease

1.2e-06

52.31

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Query:  REEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE
        R E A+  W+  P         M +DEAGR  VLGP+ YG   C CSY KAL +LN ADSKTLKE
Subjt:  REEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE

A0A6J1H0A3 uncharacterized protein LOC111458856 isoform X1

6.0e-64

100

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Query:  MSLRTSFDFLPIVEFLHMNLKDLFLFQYAIGSISEPMIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDC
        MSLRTSFDFLPIVEFLHMNLKDLFLFQYAIGSISEPMIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDC
Subjt:  MSLRTSFDFLPIVEFLHMNLKDLFLFQYAIGSISEPMIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDC

Query:  CCSYVKALPSLNLADSKTLKE
        CCSYVKALPSLNLADSKTLKE
Subjt:  CCSYVKALPSLNLADSKTLKE

A0A6J1H207 ribonuclease H2 subunit A-like isoform X2

5.9e-43

100

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Query:  MIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE
        MIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE
Subjt:  MIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE

A0A6J1JBZ7 ribonuclease H2 subunit A-like isoform X2

1.1e-38

94.12

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Query:  MIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE
        MIYGRLYCG FYSKGNAEE REEPAMFLWSQSP ELRGLV+WMTVDEAGRVLVLGPVAYGYSDC CSYVKALPSLNLADSKTLKE
Subjt:  MIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE

A0A6J1JK96 uncharacterized protein LOC111485320 isoform X1

6.5e-58

93.39

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Query:  MSLRTSFDFLPIVEFLHMNLKDLFLFQYAIGSISEPMIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDC
        M+LRTS DFLPIVEF HMNLKDLFLFQYAIGSISEPMIYGRLYCG FYSKGNAEE REEPAMFLWSQSP ELRGLV+WMTVDEAGRVLVLGPVAYGYSDC
Subjt:  MSLRTSFDFLPIVEFLHMNLKDLFLFQYAIGSISEPMIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDC

Query:  CCSYVKALPSLNLADSKTLKE
         CSYVKALPSLNLADSKTLKE
Subjt:  CCSYVKALPSLNLADSKTLKE

SwissProt top hits

e value

%identity

Alignment

Q9SEZ6 Ribonuclease H2 subunit A

7.2e-06

60.47

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Query:  MTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE
        M +DEAGR  VLGP+ YG   C  SY  +L SL+ ADSKTLKE
Subjt:  MTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE

Arabidopsis top hits

e value

%identity

Alignment

AT2G25100.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

5.1e-07

60.47

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Query:  MTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE
        M +DEAGR  VLGP+ YG   C  SY  +L SL+ ADSKTLKE
Subjt:  MTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE

AT2G25100.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

5.1e-07

60.47

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Query:  MTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE
        M +DEAGR  VLGP+ YG   C  SY  +L SL+ ADSKTLKE
Subjt:  MTVDEAGRVLVLGPVAYGYSDCCCSYVKALPSLNLADSKTLKE

Sequences

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CDS sequence

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mRNA sequence

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ATGAGTTTGAGAACTTCATTTGATTTCCTTCCGATTGTCGAGTTTTTGCATATGAATTTGAAGGATCTATTTCTTTTTCAGTATGCAATCGGTTCGATCTCGGAGCCGAT
GATTTATGGACGCTTGTACTGCGGGTGTTTCTATTCGAAAGGAAACGCTGAAGAACAGAGAGAGGAACCGGCAATGTTTCTCTGGAGCCAATCCCCAAAGGAGCTTCGAG
GCCTTGTAGAATGGATGACTGTCGATGAAGCCGGTCGAGTTCTTGTTTTAGGACCAGTAGCGTATGGATACTCGGACTGCTGTTGTTCCTATGTCAAAGCACTTCCGTCT
TTGAATTTAGCAGACTCAAAAACATTGAAAGAATAGAAGACATAGGAATTGTTTGAAAATTTGAAGGCTAACGAATCAATTGGATGGGCTGCTGATGTCAAAGATCCACG
CGAGCTCTCGCATCCAAAACGCTAAATAACAGGAAAGAAAGATCCAACAAGAAAGCTGAAGCACACACCTCAATCAACAGATTTAACAATGTTCTTGTATGGAAGCAGCC
TTGATATCAGAAAACTAAATGGAGATGAACAATGGCAGCCAAAACTGAAGCTACCAGAAGCCCCATGTTGTTTTCATAGTGATTTCCTGCATTGCGCGTTCGACCTTGGC
GATGATGTGCTTGTGCCGAACCAGCGGCATAAACAGGGATTACGGCCGCACCTCCGCCTCCTGCTTGAGGTCTACCGCCACCACCATTTTCTCCGCCGCCGGCGGCACTT
CCATGACCAATCCCTTGAGAAACGGTGATTGCCCTTGCACTGTATATGCTGCTAATCCGGTTAGTGACACCATCCTTGCCATGTTTTTCTGCATTAGTTTTCTGGTGGTA
ATTTGACTCTGCATACATATAGAAACTGGTTTAGGAATGGGGGTATAATGAATTTCATTTCTTAAAGCTTAACAAATGTGACCCTTTATTTCTTCGTAGGAATTTAGTGG
TAAGTTTTCTTTTGGTGACCCTTTATTTCTTCGTGGGAAGTGTGTAGGAATATTCTATTCATGGCATGCACAAGTGAGGCACCAAAAATTCCCACTTTATAAGTTTCTAA
TCTTGTATTTGATTTAAATCCCAT

Protein sequence

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MSLRTSFDFLPIVEFLHMNLKDLFLFQYAIGSISEPMIYGRLYCGCFYSKGNAEEQREEPAMFLWSQSPKELRGLVEWMTVDEAGRVLVLGPVAYGYSDCCCSYVKALPS
LNLADSKTLKE

CmoCh04G015110 (gene) of Cucurbita moschata (Rifu) v1 genome