; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G015900 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G015900
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA binding
Genome locationCmo_Chr04:8104260..8104658
RNA-Seq ExpressionCmoCh04G015900
SyntenyCmoCh04G015900
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR000048 - IQ motif, EF-hand binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3784110.1 hypothetical protein EJ110_NYTH15557 [Nymphaea thermarum]2.7e-1941.09Show/hide
Query:  PTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVIREI
        P    +++ ++ MLVPPV     +A +++Q+ RQR+QL+     L+ HP L    V  FPP L I +H   VE+A  P +E  R   +QPE  GEV+ EI
Subjt:  PTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVIREI

Query:  CMAILRRSQHVIPQIDFPKLRYIVHHHQI
        CMA+LRR+QH++PQ+ FP+   ++ HH++
Subjt:  CMAILRRSQHVIPQIDFPKLRYIVHHHQI

PON52878.1 hypothetical protein TorRG33x02_307230 [Trema orientale]1.2e-2246.21Show/hide
Query:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI
        M+ PT   +++  +PMLVPPV +  ++ S+++QKWR R+Q++   P L  HP L P RVL  PP LQ+ +H P VE+A  PPLER    RI+PE  GEV 
Subjt:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI

Query:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI
         E+ +A+LRR Q    QID P+   +V HHQ+
Subjt:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI

PON65745.1 hypothetical protein PanWU01x14_114880 [Parasponia andersonii]4.4e-2245.45Show/hide
Query:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI
        M+ PT   +++  +PMLVPPV +  ++ S+++QKWR R+Q++   P L  HP L P RVL  PP LQ+ +H P VE+A  PPLER    RI+PE  GEV 
Subjt:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI

Query:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI
         ++ +A+LRR Q    QID P+   +V HHQ+
Subjt:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI

PON75384.1 hypothetical protein PanWU01x14_043510 [Parasponia andersonii]3.6e-2446.21Show/hide
Query:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI
        M+I     QI+P +P+LVPPV +  H+ S+N+Q+  Q  +L++  PLL+ HP L   RV P  P  Q+D+HHP VE+AR P LERRR  R++PE  GEV+
Subjt:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI

Query:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI
         E+ +A+LR   HV  Q+D P+LR++V   Q+
Subjt:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI

PON87050.1 hypothetical protein TorRG33x02_171630 [Trema orientale]2.5e-2546.97Show/hide
Query:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI
        M+IP    QI+P +P+LVPPV +  H+ S+N+Q+  Q  +L++  PLL+PHP L   RV P  P  Q+D+HHP VE+AR P LERRR  R++PE  GEV+
Subjt:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI

Query:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI
         E+ +A+L    HV  Q+D P+LR++V   Q+
Subjt:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI

TrEMBL top hitse value%identityAlignment
A0A2P5AVF3 Uncharacterized protein2.9e-1946.34Show/hide
Query:  IIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVIREICMAILR
        ++ AQ +LVPPV    H++ +++++ RQR+QL++SV LL+ HP   P RV   PP  QI +HHP VE+AR P  ERRRV  ++PE R EV+ E+ +A+LR
Subjt:  IIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVIREICMAILR

Query:  RSQHVIPQIDFPKLRYIVHHHQI
              P+   P+LR +VHH QI
Subjt:  RSQHVIPQIDFPKLRYIVHHHQI

A0A2P5BVS6 Uncharacterized protein5.6e-2346.21Show/hide
Query:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI
        M+ PT   +++  +PMLVPPV +  ++ S+++QKWR R+Q++   P L  HP L P RVL  PP LQ+ +H P VE+A  PPLER    RI+PE  GEV 
Subjt:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI

Query:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI
         E+ +A+LRR Q    QID P+   +V HHQ+
Subjt:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI

A0A2P5CXN2 Uncharacterized protein2.1e-2245.45Show/hide
Query:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI
        M+ PT   +++  +PMLVPPV +  ++ S+++QKWR R+Q++   P L  HP L P RVL  PP LQ+ +H P VE+A  PPLER    RI+PE  GEV 
Subjt:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI

Query:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI
         ++ +A+LRR Q    QID P+   +V HHQ+
Subjt:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI

A0A2P5DQ05 Uncharacterized protein1.8e-2446.21Show/hide
Query:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI
        M+I     QI+P +P+LVPPV +  H+ S+N+Q+  Q  +L++  PLL+ HP L   RV P  P  Q+D+HHP VE+AR P LERRR  R++PE  GEV+
Subjt:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI

Query:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI
         E+ +A+LR   HV  Q+D P+LR++V   Q+
Subjt:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI

A0A2P5ENC8 Uncharacterized protein1.2e-2546.97Show/hide
Query:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI
        M+IP    QI+P +P+LVPPV +  H+ S+N+Q+  Q  +L++  PLL+PHP L   RV P  P  Q+D+HHP VE+AR P LERRR  R++PE  GEV+
Subjt:  MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVI

Query:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI
         E+ +A+L    HV  Q+D P+LR++V   Q+
Subjt:  REICMAILRRSQHVIPQIDFPKLRYIVHHHQI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATTCCTACAAACCCCTTTCAGATTATCCCCGCCCAGCCCATGTTGGTTCCACCGGTGCGCTACTCCTTCCACATCGCCAGCAAAAACGAGCAAAAATGGAGGCA
GCGATCCCAACTCATAAATTCTGTTCCTCTTCTGAATCCTCATCCATTTCTCCAACCTTTCCGTGTACTTCCCTTCCCTCCATTTCTCCAAATCGATAACCATCACCCCT
GTGTTGAAATAGCACGCTTTCCGCCCCTTGAACGCCGCCGCGTGTTCCGAATTCAACCAGAATTTCGGGGTGAAGTAATTCGTGAAATTTGCATGGCAATACTCCGGCGC
TCCCAGCACGTGATTCCCCAAATTGATTTTCCAAAGCTTCGCTACATCGTCCACCACCACCAGATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATTCCTACAAACCCCTTTCAGATTATCCCCGCCCAGCCCATGTTGGTTCCACCGGTGCGCTACTCCTTCCACATCGCCAGCAAAAACGAGCAAAAATGGAGGCA
GCGATCCCAACTCATAAATTCTGTTCCTCTTCTGAATCCTCATCCATTTCTCCAACCTTTCCGTGTACTTCCCTTCCCTCCATTTCTCCAAATCGATAACCATCACCCCT
GTGTTGAAATAGCACGCTTTCCGCCCCTTGAACGCCGCCGCGTGTTCCGAATTCAACCAGAATTTCGGGGTGAAGTAATTCGTGAAATTTGCATGGCAATACTCCGGCGC
TCCCAGCACGTGATTCCCCAAATTGATTTTCCAAAGCTTCGCTACATCGTCCACCACCACCAGATCTGA
Protein sequenceShow/hide protein sequence
MKIPTNPFQIIPAQPMLVPPVRYSFHIASKNEQKWRQRSQLINSVPLLNPHPFLQPFRVLPFPPFLQIDNHHPCVEIARFPPLERRRVFRIQPEFRGEVIREICMAILRR
SQHVIPQIDFPKLRYIVHHHQI