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CmoCh04G016180 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G016180
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionProtein IDA-like
Genome locationCmo_Chr04:8255171..8255437
RNA-Seq ExpressionCmoCh04G016180
SyntenyCmoCh04G016180
Gene Ontology termsGO:0010227 - floral organ abscission (biological process)
GO:0005615 - extracellular space (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR039639 - Protein IDA-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034518.1 putative Membrane lipoprotein [Cucumis melo var. makuwa]3.8e-2268.75Show/hide
Query:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        SSSSSSSSS S+         IF+LLLLL+SGF SATRPG TM     PD+SN NYK T FRY GQTF +LP+GVPIPPSGPSDRHNS+VDSLPP+
Subjt:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

KAG6601330.1 Protein IDA, partial [Cucurbita argyrosperma subsp. sororia]5.9e-39100Show/hide
Query:  SSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        SSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
Subjt:  SSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

KAG7032113.1 Protein IDA, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-3998.86Show/hide
Query:  MLSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        MLSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDL NFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
Subjt:  MLSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

KGN52035.1 hypothetical protein Csa_008746 [Cucumis sativus]2.5e-2169.32Show/hide
Query:  LSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGH-ELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        + SSSS +S    I +LLLLL+SG  SATRPGKTM   E+ PD+SN +YKT FRY GQTFS+LP+GVPIPPSGPSDRHNS+VDSLPP+
Subjt:  LSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGH-ELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

TYK09072.1 putative Membrane lipoprotein [Cucumis melo var. makuwa]3.8e-2268.75Show/hide
Query:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        SSSSSSSSS S+         IF+LLLLL+SGF SATRPG TM     PD+SN NYK T FRY GQTF +LP+GVPIPPSGPSDRHNS+VDSLPP+
Subjt:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

TrEMBL top hitse value%identityAlignment
A0A0A0KR07 Uncharacterized protein1.2e-2169.32Show/hide
Query:  LSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGH-ELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        + SSSS +S    I +LLLLL+SG  SATRPGKTM   E+ PD+SN +YKT FRY GQTFS+LP+GVPIPPSGPSDRHNS+VDSLPP+
Subjt:  LSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGH-ELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

A0A2P6R1Y4 Uncharacterized protein1.1e-1148.48Show/hide
Query:  MLSSSSSSSSSLS----AIFVLLLLLVSGFCSATRPGKT---------MGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP
        M SSSSSSSSS S      F+ L+LL+ G C+ATR GKT         M  E   +L+   ++T FR+ G+ FS+ P+G P+PPSGPS RHNS+V+S P
Subjt:  MLSSSSSSSSSLS----AIFVLLLLLVSGFCSATRPGKT---------MGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP

A0A5A7SV51 Putative Membrane lipoprotein1.9e-2268.75Show/hide
Query:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        SSSSSSSSS S+         IF+LLLLL+SGF SATRPG TM     PD+SN NYK T FRY GQTF +LP+GVPIPPSGPSDRHNS+VDSLPP+
Subjt:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

A0A5D3CCP4 Putative Membrane lipoprotein1.9e-2268.75Show/hide
Query:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS
        SSSSSSSSS S+         IF+LLLLL+SGF SATRPG TM     PD+SN NYK T FRY GQTF +LP+GVPIPPSGPSDRHNS+VDSLPP+
Subjt:  SSSSSSSSSLSA---------IFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYK-TGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS

A0A6A3AVE8 Piriformospora indica-insensitive protein 2-like1.1e-1152.86Show/hide
Query:  VLLLLLVSGFCSATRPGKTMGHELKPDLSNF--NYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDS
        V L++LV+G   A+RPGK M  + +  ++ F   Y+TGF Y GQ F++ P+G+PIPPSGPS RHNS+VDS
Subjt:  VLLLLLVSGFCSATRPGKTMGHELKPDLSNF--NYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDS

SwissProt top hitse value%identityAlignment
Q8LAD7 Protein IDA6.6e-0947.89Show/hide
Query:  FVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP
        FVL L   S   +A R G TM  E+K ++    +K         F YLP+GVPIPPS PS RHNS V+SLP
Subjt:  FVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP

Arabidopsis top hitse value%identityAlignment
AT1G68765.1 Putative membrane lipoprotein4.7e-1047.89Show/hide
Query:  FVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP
        FVL L   S   +A R G TM  E+K ++    +K         F YLP+GVPIPPS PS RHNS V+SLP
Subjt:  FVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLP

AT3G25655.1 inflorescence deficient in abscission (IDA)-like 13.0e-0430.86Show/hide
Query:  SSSSSLSAIFVLLLLLVSGFCSATR--PGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSL
        S  +    ++++ LL+   + +  R  P K    E+    S      GF + G+ F    + V +PPSGPS RHNS+V++L
Subjt:  SSSSSLSAIFVLLLLLVSGFCSATR--PGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTCTTCTTCTTCTTCTTCTTCCTCTTCTTTGTCCGCCATTTTCGTTCTCCTTCTCCTTCTTGTTTCTGGGTTTTGCTCTGCAACTCGGCCTGGTAAAACCATGGG
ACATGAGTTGAAACCCGACTTGTCGAATTTCAATTACAAGACGGGGTTCCGATATGTCGGTCAGACCTTCAGTTATCTTCCCAGAGGCGTCCCGATTCCTCCGTCAGGCC
CTTCCGACCGCCACAACTCTCTGGTTGACTCTCTTCCTCCCAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTCTTCTTCTTCTTCTTCTTCCTCTTCTTTGTCCGCCATTTTCGTTCTCCTTCTCCTTCTTGTTTCTGGGTTTTGCTCTGCAACTCGGCCTGGTAAAACCATGGG
ACATGAGTTGAAACCCGACTTGTCGAATTTCAATTACAAGACGGGGTTCCGATATGTCGGTCAGACCTTCAGTTATCTTCCCAGAGGCGTCCCGATTCCTCCGTCAGGCC
CTTCCGACCGCCACAACTCTCTGGTTGACTCTCTTCCTCCCAGTTAA
Protein sequenceShow/hide protein sequence
MLSSSSSSSSSLSAIFVLLLLLVSGFCSATRPGKTMGHELKPDLSNFNYKTGFRYVGQTFSYLPRGVPIPPSGPSDRHNSLVDSLPPS