; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G016830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G016830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionReverse transcriptase
Genome locationCmo_Chr04:8538124..8539116
RNA-Seq ExpressionCmoCh04G016830
SyntenyCmoCh04G016830
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008194 - UDP-glycosyltransferase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR016197 - Chromo-like domain superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025848.1 pol protein [Cucumis melo var. makuwa]8.5e-13973.35Show/hide
Query:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI
        AHF+PGK+TY   +W QLY+ EIVRLHGVPVSI+SDRD RFTS+FWK LQ ALGT+L FSTAFHPQTDGQTERLNQILEDMLRACVL+F+G WD HL L+
Subjt:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI

Query:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK
        EFAYNNSYQATI MAPFEA+YG+ CR+PV W EVG Q++LGPELVQ TNAA+QKI+ R+LTAQSRQKSYAD+RR+DLEFEVG  VF+KVAPM+GV+RF K
Subjt:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK

Query:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE
        KGKLSPRFVGPFEILER+G VAY++ALPP+ AAVH+VFH+SMLRKY +DPTHV++ E L + E+LSYE +P ++LAR+ ++LR++ IPLVK+ W NH  E
Subjt:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE

Query:  EATWEREEDVRRTYPELFQ
        EATWE+EED+R  YPELF+
Subjt:  EATWEREEDVRRTYPELFQ

KAA0031437.1 pol protein [Cucumis melo var. makuwa]8.5e-13973.35Show/hide
Query:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI
        AHF+PGK+TY   +W QLY+ EIVRLHGVPVSI+SDRD RFTS+FWK LQ ALGT+L FSTAFHPQTDGQTERLNQILEDMLRACVL+F+G WD HL L+
Subjt:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI

Query:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK
        EFAYNNSYQATI MAPFEA+YG+ CR+PV W EVG Q++LGPELVQ TNAA+QKI+ R+LTAQSRQKSYAD+RR+DLEFEVG  VF+KVAPM+GV+RF K
Subjt:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK

Query:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE
        KGKLSPRFVGPFEILER+G VAY++ALPP+ AAVH+VFH+SMLRKY +DPTHV++ E L + E+LSYE +P ++LAR+ ++LR++ IPLVK+ W NH  E
Subjt:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE

Query:  EATWEREEDVRRTYPELFQ
        EATWE+EED+R  YPELF+
Subjt:  EATWEREEDVRRTYPELFQ

KAA0032541.1 pol protein [Cucumis melo var. makuwa]6.5e-13973.35Show/hide
Query:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI
        AHF+PGK+TY   +W QLY+ EIVRLHGVPVSI+SDRD RFTS+FWK LQ ALGT+L FSTAFHPQTDGQTERLNQILEDMLRACVL+F+G WD HL L+
Subjt:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI

Query:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK
        EFAYNNSYQATI MAPFEA+YG+ CR+PV W EVG Q++LGPELVQ TNAA+QKI+ R+LTAQSRQKSYAD+RR+DLEFEVG  VF+KVAPM+GV+RF K
Subjt:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK

Query:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE
        KGKLSPRFVGPFEILER+G VAY++ALPP+ AAVH+VFH+SMLRKY +DPTHV++ E L + E+LSYE +P ++LAR+ ++LR++ IPLVK+ W NH  E
Subjt:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE

Query:  EATWEREEDVRRTYPELFQ
        EATWE+EED+R  YPELF+
Subjt:  EATWEREEDVRRTYPELFQ

KAA0033825.1 pol protein [Cucumis melo var. makuwa]8.5e-13973.35Show/hide
Query:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI
        AHF+PGK+TY   +W QLY+ EIVRLHGVPVSI+SDRD RFTS+FWK LQ ALGT+L FSTAFHPQTDGQTERLNQILEDMLRACVL+F+G WD HL L+
Subjt:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI

Query:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK
        EFAYNNSYQATI MAPFEA+YG+ CR+PV W EVG Q++LGPELVQ TNAA+QKI+ R+LTAQSRQKSYAD+RR+DLEFEVG  VF+KVAPM+GV+RF K
Subjt:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK

Query:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE
        KGKLSPRFVGPFEILER+G VAY++ALPP+ AAVH+VFH+SMLRKY +DPTHV++ E L + E+LSYE +P ++LAR+ ++LR++ IPLVK+ W NH  E
Subjt:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE

Query:  EATWEREEDVRRTYPELFQ
        EATWE+EED+R  YPELF+
Subjt:  EATWEREEDVRRTYPELFQ

TYK28422.1 pol protein [Cucumis melo var. makuwa]8.5e-13973.35Show/hide
Query:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI
        AHF+PGK+TY   +W QLY+ EIVRLHGVPVSI+SDRD RFTS+FWK LQ ALGT+L FSTAFHPQTDGQTERLNQILEDMLRACVL+F+G WD HL L+
Subjt:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI

Query:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK
        EFAYNNSYQATI MAPFEA+YG+ CR+PV W EVG Q++LGPELVQ TNAA+QKI+ R+LTAQSRQKSYAD+RR+DLEFEVG  VF+KVAPM+GV+RF K
Subjt:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK

Query:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE
        KGKLSPRFVGPFEILER+G VAY++ALPP+ AAVH+VFH+SMLRKY +DPTHV++ E L + E+LSYE +P ++LAR+ ++LR++ IPLVK+ W NH  E
Subjt:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE

Query:  EATWEREEDVRRTYPELFQ
        EATWE+EED+R  YPELF+
Subjt:  EATWEREEDVRRTYPELFQ

TrEMBL top hitse value%identityAlignment
A0A5A7SSL3 Reverse transcriptase3.1e-13973.35Show/hide
Query:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI
        AHF+PGK+TY   +W QLY+ EIVRLHGVPVSI+SDRD RFTS+FWK LQ ALGT+L FSTAFHPQTDGQTERLNQILEDMLRACVL+F+G WD HL L+
Subjt:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI

Query:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK
        EFAYNNSYQATI MAPFEA+YG+ CR+PV W EVG Q++LGPELVQ TNAA+QKI+ R+LTAQSRQKSYAD+RR+DLEFEVG  VF+KVAPM+GV+RF K
Subjt:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK

Query:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE
        KGKLSPRFVGPFEILER+G VAY++ALPP+ AAVH+VFH+SMLRKY +DPTHV++ E L + E+LSYE +P ++LAR+ ++LR++ IPLVK+ W NH  E
Subjt:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE

Query:  EATWEREEDVRRTYPELFQ
        EATWE+EED+R  YPELF+
Subjt:  EATWEREEDVRRTYPELFQ

A0A5A7TEQ2 Reverse transcriptase4.1e-13973.35Show/hide
Query:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI
        AHF+PGK+TY   +W QLY+ EIVRLHGVPVSI+SDRD RFTS+FWK LQ ALGT+L FSTAFHPQTDGQTERLNQILEDMLRACVL+F+G WD HL L+
Subjt:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI

Query:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK
        EFAYNNSYQATI MAPFEA+YG+ CR+PV W EVG Q++LGPELVQ TNAA+QKI+ R+LTAQSRQKSYAD+RR+DLEFEVG  VF+KVAPM+GV+RF K
Subjt:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK

Query:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE
        KGKLSPRFVGPFEILER+G VAY++ALPP+ AAVH+VFH+SMLRKY +DPTHV++ E L + E+LSYE +P ++LAR+ ++LR++ IPLVK+ W NH  E
Subjt:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE

Query:  EATWEREEDVRRTYPELFQ
        EATWE+EED+R  YPELF+
Subjt:  EATWEREEDVRRTYPELFQ

A0A5A7TSL0 Reverse transcriptase4.1e-13973.35Show/hide
Query:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI
        AHF+PGK+TY   +W QLY+ EIVRLHGVPVSI+SDRD RFTS+FWK LQ ALGT+L FSTAFHPQTDGQTERLNQILEDMLRACVL+F+G WD HL L+
Subjt:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI

Query:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK
        EFAYNNSYQATI MAPFEA+YG+ CR+PV W EVG Q++LGPELVQ TNAA+QKI+ R+LTAQSRQKSYAD+RR+DLEFEVG  VF+KVAPM+GV+RF K
Subjt:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK

Query:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE
        KGKLSPRFVGPFEILER+G VAY++ALPP+ AAVH+VFH+SMLRKY +DPTHV++ E L + E+LSYE +P ++LAR+ ++LR++ IPLVK+ W NH  E
Subjt:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE

Query:  EATWEREEDVRRTYPELFQ
        EATWE+EED+R  YPELF+
Subjt:  EATWEREEDVRRTYPELFQ

A0A5A7UBS1 Reverse transcriptase4.1e-13973.35Show/hide
Query:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI
        AHF+PGK+TY   +W QLY+ EIVRLHGVPVSI+SDRD RFTS+FWK LQ ALGT+L FSTAFHPQTDGQTERLNQILEDMLRACVL+F+G WD HL L+
Subjt:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI

Query:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK
        EFAYNNSYQATI MAPFEA+YG+ CR+PV W EVG Q++LGPELVQ TNAA+QKI+ R+LTAQSRQKSYAD+RR+DLEFEVG  VF+KVAPM+GV+RF K
Subjt:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK

Query:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE
        KGKLSPRFVGPFEILER+G VAY++ALPP+ AAVH+VFH+SMLRKY +DPTHV++ E L + E+LSYE +P ++LAR+ ++LR++ IPLVK+ W NH  E
Subjt:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE

Query:  EATWEREEDVRRTYPELFQ
        EATWE+EED+R  YPELF+
Subjt:  EATWEREEDVRRTYPELFQ

A0A5D3CQB5 Reverse transcriptase4.1e-13973.35Show/hide
Query:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI
        AHF+PGK+TY   +W QLY+ EIVRLHGVPVSI+SDRD RFTS+FWK LQ ALGT+L FSTAFHPQTDGQTERLNQILEDMLRACVL+F+G WD HL L+
Subjt:  AHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLI

Query:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK
        EFAYNNSYQATI MAPFEA+YG+ CR+PV W EVG Q++LGPELVQ TNAA+QKI+ R+LTAQSRQKSYAD+RR+DLEFEVG  VF+KVAPM+GV+RF K
Subjt:  EFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGK

Query:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE
        KGKLSPRFVGPFEILER+G VAY++ALPP+ AAVH+VFH+SMLRKY +DPTHV++ E L + E+LSYE +P ++LAR+ ++LR++ IPLVK+ W NH  E
Subjt:  KGKLSPRFVGPFEILERVGAVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHE

Query:  EATWEREEDVRRTYPELFQ
        EATWE+EED+R  YPELF+
Subjt:  EATWEREEDVRRTYPELFQ

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.4e-3030.88Show/hide
Query:  MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPL
        MA  +P   +   ++ A+++ + ++   G P  I++D D  FTSQ WK         ++FS  + PQTDGQTER NQ +E +LR         W +H+ L
Subjt:  MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPL

Query:  IEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-EFEVGGHVFVKVAPMRGVMRF
        ++ +YNN+  +  QM PFE ++  R    +   E+ +      E  Q T    Q +K+ + T   + K Y D++ +++ EF+ G  V VK     G +  
Subjt:  IEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-EFEVGGHVFVKVAPMRGVMRF

Query:  GKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNVFHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY
         K  KL+P F GPF +L++ G   Y++ LP ++  +  + FHVS L KY         T D +      H++EH+    RE + Y
Subjt:  GKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNVFHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY

P0CT35 Transposon Tf2-2 polyprotein1.4e-3030.88Show/hide
Query:  MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPL
        MA  +P   +   ++ A+++ + ++   G P  I++D D  FTSQ WK         ++FS  + PQTDGQTER NQ +E +LR         W +H+ L
Subjt:  MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPL

Query:  IEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-EFEVGGHVFVKVAPMRGVMRF
        ++ +YNN+  +  QM PFE ++  R    +   E+ +      E  Q T    Q +K+ + T   + K Y D++ +++ EF+ G  V VK     G +  
Subjt:  IEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-EFEVGGHVFVKVAPMRGVMRF

Query:  GKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNVFHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY
         K  KL+P F GPF +L++ G   Y++ LP ++  +  + FHVS L KY         T D +      H++EH+    RE + Y
Subjt:  GKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNVFHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY

P0CT36 Transposon Tf2-3 polyprotein1.4e-3030.88Show/hide
Query:  MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPL
        MA  +P   +   ++ A+++ + ++   G P  I++D D  FTSQ WK         ++FS  + PQTDGQTER NQ +E +LR         W +H+ L
Subjt:  MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPL

Query:  IEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-EFEVGGHVFVKVAPMRGVMRF
        ++ +YNN+  +  QM PFE ++  R    +   E+ +      E  Q T    Q +K+ + T   + K Y D++ +++ EF+ G  V VK     G +  
Subjt:  IEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-EFEVGGHVFVKVAPMRGVMRF

Query:  GKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNVFHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY
         K  KL+P F GPF +L++ G   Y++ LP ++  +  + FHVS L KY         T D +      H++EH+    RE + Y
Subjt:  GKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNVFHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY

P0CT41 Transposon Tf2-12 polyprotein1.4e-3030.88Show/hide
Query:  MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPL
        MA  +P   +   ++ A+++ + ++   G P  I++D D  FTSQ WK         ++FS  + PQTDGQTER NQ +E +LR         W +H+ L
Subjt:  MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPL

Query:  IEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-EFEVGGHVFVKVAPMRGVMRF
        ++ +YNN+  +  QM PFE ++  R    +   E+ +      E  Q T    Q +K+ + T   + K Y D++ +++ EF+ G  V VK     G +  
Subjt:  IEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-EFEVGGHVFVKVAPMRGVMRF

Query:  GKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNVFHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY
         K  KL+P F GPF +L++ G   Y++ LP ++  +  + FHVS L KY         T D +      H++EH+    RE + Y
Subjt:  GKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNVFHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY

Q9UR07 Transposon Tf2-11 polyprotein1.4e-3030.88Show/hide
Query:  MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPL
        MA  +P   +   ++ A+++ + ++   G P  I++D D  FTSQ WK         ++FS  + PQTDGQTER NQ +E +LR         W +H+ L
Subjt:  MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPL

Query:  IEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-EFEVGGHVFVKVAPMRGVMRF
        ++ +YNN+  +  QM PFE ++  R    +   E+ +      E  Q T    Q +K+ + T   + K Y D++ +++ EF+ G  V VK     G +  
Subjt:  IEFAYNNSYQATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDL-EFEVGGHVFVKVAPMRGVMRF

Query:  GKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNVFHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY
         K  KL+P F GPF +L++ G   Y++ LP ++  +  + FHVS L KY         T D +      H++EH+    RE + Y
Subjt:  GKKGKLSPRFVGPFEILERVGAVAYKIALPPNLAAV-HNVFHVSMLRKY---------TSDPT------HVIEHETLPLREDLSY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCACTTCATCCCAGGCAAAACCACTTATCGTGTGGATCGGTGGGCTCAGCTGTATATCAGAGAAATAGTACGCTTGCATGGTGTACCGGTGTCTATAGTGTCTGA
TCGGGACACTAGATTCACCTCTCAGTTCTGGAAAAGCCTCCAAAAAGCATTGGGGACTCAGTTAAGGTTTAGTACAGCATTCCATCCTCAGACGGACGGACAGACTGAAA
GATTGAATCAAATTTTGGAAGATATGTTGCGAGCTTGTGTCTTGGATTTCGCTGGGTGCTGGGATGAACATCTACCTCTGATAGAGTTTGCTTATAATAATAGCTATCAA
GCGACCATCCAGATGGCCCCTTTTGAGGCGATGTATGGGCGTAGGTGTCGAACACCAGTATTTTGGGAAGAAGTAGGCACGCAGCAGCTACTGGGACCGGAGTTAGTTCA
GGTCACCAACGCGGCAGTGCAGAAAATTAAGCAAAGAATCCTCACTGCACAAAGCCGGCAGAAGAGCTATGCAGATTTGCGTAGAAGGGACCTCGAGTTCGAGGTGGGTG
GCCATGTGTTCGTGAAGGTAGCCCCTATGAGAGGGGTGATGAGGTTTGGAAAGAAAGGGAAGTTAAGCCCAAGGTTTGTAGGCCCTTTCGAGATTCTAGAGAGAGTTGGG
GCCGTGGCGTATAAGATTGCTCTACCACCAAACCTTGCCGCCGTTCACAACGTGTTCCACGTATCTATGCTGCGAAAGTACACCTCAGACCCTACTCACGTGATTGAACA
CGAAACCCTCCCTCTTCGGGAAGATTTGTCCTACGAGGTAAGACCCAGCAAAATTCTGGCTCGAGACACTAGGCGTCTGCGCAACAAAGTTATTCCCTTGGTAAAAGTCG
CATGGGGTAACCATCGACACGAGGAGGCAACCTGGGAACGAGAAGAAGACGTAAGGAGAACCTATCCCGAACTCTTCCAAGGGATACCAACTTTCGGGGACGAAAGTTTT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCACTTCATCCCAGGCAAAACCACTTATCGTGTGGATCGGTGGGCTCAGCTGTATATCAGAGAAATAGTACGCTTGCATGGTGTACCGGTGTCTATAGTGTCTGA
TCGGGACACTAGATTCACCTCTCAGTTCTGGAAAAGCCTCCAAAAAGCATTGGGGACTCAGTTAAGGTTTAGTACAGCATTCCATCCTCAGACGGACGGACAGACTGAAA
GATTGAATCAAATTTTGGAAGATATGTTGCGAGCTTGTGTCTTGGATTTCGCTGGGTGCTGGGATGAACATCTACCTCTGATAGAGTTTGCTTATAATAATAGCTATCAA
GCGACCATCCAGATGGCCCCTTTTGAGGCGATGTATGGGCGTAGGTGTCGAACACCAGTATTTTGGGAAGAAGTAGGCACGCAGCAGCTACTGGGACCGGAGTTAGTTCA
GGTCACCAACGCGGCAGTGCAGAAAATTAAGCAAAGAATCCTCACTGCACAAAGCCGGCAGAAGAGCTATGCAGATTTGCGTAGAAGGGACCTCGAGTTCGAGGTGGGTG
GCCATGTGTTCGTGAAGGTAGCCCCTATGAGAGGGGTGATGAGGTTTGGAAAGAAAGGGAAGTTAAGCCCAAGGTTTGTAGGCCCTTTCGAGATTCTAGAGAGAGTTGGG
GCCGTGGCGTATAAGATTGCTCTACCACCAAACCTTGCCGCCGTTCACAACGTGTTCCACGTATCTATGCTGCGAAAGTACACCTCAGACCCTACTCACGTGATTGAACA
CGAAACCCTCCCTCTTCGGGAAGATTTGTCCTACGAGGTAAGACCCAGCAAAATTCTGGCTCGAGACACTAGGCGTCTGCGCAACAAAGTTATTCCCTTGGTAAAAGTCG
CATGGGGTAACCATCGACACGAGGAGGCAACCTGGGAACGAGAAGAAGACGTAAGGAGAACCTATCCCGAACTCTTCCAAGGGATACCAACTTTCGGGGACGAAAGTTTT
TAA
Protein sequenceShow/hide protein sequence
MAHFIPGKTTYRVDRWAQLYIREIVRLHGVPVSIVSDRDTRFTSQFWKSLQKALGTQLRFSTAFHPQTDGQTERLNQILEDMLRACVLDFAGCWDEHLPLIEFAYNNSYQ
ATIQMAPFEAMYGRRCRTPVFWEEVGTQQLLGPELVQVTNAAVQKIKQRILTAQSRQKSYADLRRRDLEFEVGGHVFVKVAPMRGVMRFGKKGKLSPRFVGPFEILERVG
AVAYKIALPPNLAAVHNVFHVSMLRKYTSDPTHVIEHETLPLREDLSYEVRPSKILARDTRRLRNKVIPLVKVAWGNHRHEEATWEREEDVRRTYPELFQGIPTFGDESF