CuGenDBv2

Gene ID	CmoCh04G017040
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	RRM domain-containing protein
Genome location	Cmo_Chr04:8631260..8632942
RNA-Seq Expression	CmoCh04G017040
Synteny	CmoCh04G017040
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6601405.1 hypothetical protein SDJN03_06638, partial [Cucurbita argyrosperma subsp. sororia]

3.7e-102

97.94

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Query:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPSPHHS SFAKRRRHQPP SLP EDDDVDKPLPKPAPP+ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

XP_022957251.1 uncharacterized protein At1g27050 [Cucurbita moschata]

5.2e-104

100

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Query:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

XP_023000221.1 uncharacterized protein At1g27050 [Cucurbita maxima]

2.2e-102

98.45

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Query:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS HHSTSFAKRRRHQPPASLP EDDDVDKPLPKPAPP+ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

XP_023537967.1 uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo]

3.4e-103

98.45

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Query:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPSPHHSTSFAKRRRHQPPASLP EDDDVDKPLPKPAPP+ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLAST+VNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

XP_038892024.1 uncharacterized protein At1g27050 [Benincasa hispida]

6.0e-92

90.72

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Query:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS H  TS AKRRR  PPA  P ED+D+DKPL KPAPP+ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7STE1 Homeobox-leucine zipper protein ATHB-54

5.3e-86

87.11

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Query:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS H  TS AKRRR  PP+++   DDD++KP+ KPAPP+ALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM 
Subjt:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

A0A5D3CUC0 Thaumatin-like protein 1

5.3e-86

87.11

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Query:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS H  TS AKRRR  PP+++   DDD++KP+ KPAPP+ALVVVDLPS CSVLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM 
Subjt:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSF FTIDSKKVQVLWANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD PFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

A0A6J1DBZ8 uncharacterized protein At1g27050

1.4e-86

85.57

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Query:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        M RKRDKPYPS H  TS +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CSVLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LASTIVNPRKS+ SSR D PFR REVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

A0A6J1GYQ1 uncharacterized protein At1g27050

2.5e-104

100

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Query:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

A0A6J1KFA1 uncharacterized protein At1g27050

1.1e-102

98.45

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Query:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        MGRKRDKPYPS HHSTSFAKRRRHQPPASLP EDDDVDKPLPKPAPP+ALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
Subjt:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
        AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

SwissProt top hits

e value

%identity

Alignment

P0CJ66 Uncharacterized protein At1g27050

1.0e-49

51.46

Show/hide

Query:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        M RKRDKPY + H     +KRRR   P+S    D+ +DKP+ KP PP ALVV+ LP++CSVL+LKSRFEIYGSISRIRI +D +G + YRT +SA+AA+A
Subjt:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----------SSSRSDEPFRGREVV
         + +PSFG +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  N          SS  +    + R +V
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----------SSSRSDEPFRGREVV

Query:  AYDDIL
         YDDI+
Subjt:  AYDDIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G27050.1 homeobox protein 54

7.1e-51

51.46

Show/hide

Query:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA
        M RKRDKPY + H     +KRRR   P+S    D+ +DKP+ KP PP ALVV+ LP++CSVL+LKSRFEIYGSISRIRI +D +G + YRT +SA+AA+A
Subjt:  MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMA

Query:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----------SSSRSDEPFRGREVV
         + +PSFG +IDSKK++V+WA DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  N          SS  +    + R +V
Subjt:  AALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----------SSSRSDEPFRGREVV

Query:  AYDDIL
         YDDI+
Subjt:  AYDDIL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGTCGAAAGAGAGATAAACCTTACCCTTCCCCCCACCACTCTACGTCCTTCGCTAAGAGGCGGCGCCATCAGCCGCCGGCATCGTTGCCTGTGGAGGACGATGATGT
GGACAAGCCCTTGCCTAAGCCTGCGCCGCCGATTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCA
TCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCCCTCGATCCCTCATTCGGCTTCACC
ATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAATAAGAACAAGGAAATGTCATCGAAGCTCTT
GCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAATCCCAGAAAAAGCAACAGTTCGTCAAGGTCCGATGAGCCTTTCAGGG
GCAGGGAAGTTGTTGCTTACGATGATATTCTCTAA

mRNA sequence

Show/hide mRNA sequence

AGTGGAATGGGGCCTAAGCCCAGTTTCCTTGGCATCAACCATTCTCTGCCGCCGCTCCCCGAGAAGCGATGGGTCGAAAGAGAGATAAACCTTACCCTTCCCCCCACCAC
TCTACGTCCTTCGCTAAGAGGCGGCGCCATCAGCCGCCGGCATCGTTGCCTGTGGAGGACGATGATGTGGACAAGCCCTTGCCTAAGCCTGCGCCGCCGATTGCCCTAGT
CGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCA
TGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCCCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCT
CAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAATAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAA
GCTTGCTTCAACCATTGTCAATCCCAGAAAAAGCAACAGTTCGTCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTCTAAGGTTATA
GATCACTTCATTATTTGATAGTTTGTCTGTTGGTTTGCTCTTTTTTGGGTATATTATGGTGTAGTATAGATTGAATGTTCGAGTGCATAACTGTTTATGCTAGATTTCTC
CCAATTCCCCCTTAATTCTTACGAGTTCAAGTTTATTTATGGTCCTAAATTCATGTGTGTTAAATGTAAATCTTCCGTTAATACAAAGAAACTCGAGCTTCTCACCAAAG
CTTTGTTGCATAATCAGTGCGATCTTTTTTTCCCAACTGTTCTGAGTTCATCGAGATGCTGGATGCTTGCTTTTAATTATGCTTCGGCTTTCCTTACTATATGAGCTTCT
GCAAGAGCACAGAACCTCCTCTAAGAAGAATGCATCTTTTAACGGATTGGAAGATGTTTGTGGTTGAGCAGAACTTTTATGGAGTATTCAAATGTATGATTATTATATTT
ACTGTATAATTTATGGTTAAATTCTGTTCTTGAACGTCCATGGGCTCAGCAGGAACTGTTTCTGGCTTCTTCTTGAGGGTTTTGTAATAACTTTTTCTTGGGTTTTGGTG
AAGCTCTCTTGGCTGTTCTTGTTCTTGTTCCATATTTTGATGAGTTCTATTTCAAAAGACAAAATTTGTGAAATAGAATTACTCCTTTGATACATAATATATGAAAAAAA
ACAAGAGACCGTGACAAGAATCGTGAAAAA

Protein sequence

Show/hide protein sequence

MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFT
IDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL

CmoCh04G017040 (gene) of Cucurbita moschata (Rifu) v1 genome