; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G017240 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G017240
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor PRE6-like
Genome locationCmo_Chr04:8736921..8737484
RNA-Seq ExpressionCmoCh04G017240
SyntenyCmoCh04G017240
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601421.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. sororia]9.3e-3894Show/hide
Query:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNR----RSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MSTRTPRSRR PLPSTTISDHQIADLISKLHQLIPQIRNR     SSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
Subjt:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNR----RSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

KAG7032204.1 Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-3895.96Show/hide
Query:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRR---SSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MSTRTPRSRR PLPSTTISDHQIADLISKLHQLIPQIRNRR   SSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
Subjt:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRR---SSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

XP_022957252.1 transcription factor PRE6-like [Cucurbita moschata]2.4e-41100Show/hide
Query:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
Subjt:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

XP_022987627.1 transcription factor PRE6-like [Cucurbita maxima]6.0e-3795.83Show/hide
Query:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MSTRT RSRR PLPSTTISDHQIADLISKLHQLIPQIRNRR SSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPE+AQAAILRSLLM
Subjt:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

XP_023514693.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]3.8e-3995.83Show/hide
Query:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MSTRTPRSRR PLPSTTISDHQIADLISKLH+LIPQIRNRRSSSSTVSASK+LQETCNFIRSLEREVDDLSERLSELLASTDPE+AQAAILRSLLM
Subjt:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

TrEMBL top hitse value%identityAlignment
A0A6J1DAM4 transcription factor PRE6-like4.5e-3082.29Show/hide
Query:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MS+R+ RSRR P+PS  ISD QIADLISKL QLIP+IRN R SSS VSASKVLQETCN+IRSL+REVDDLSERLSELLASTDPE+AQAAI+RSLLM
Subjt:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

A0A6J1G268 transcription factor PRE6-like9.4e-2878.12Show/hide
Query:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MS+R+ RSRR  +PS+ ISD QIADLISKL QLIP+IRN R SSS VSASKVLQETCN+IRSL+REV DLS+RLSELL STDPE+AQAAI+RSLLM
Subjt:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

A0A6J1GYM6 transcription factor PRE6-like1.1e-41100Show/hide
Query:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
Subjt:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

A0A6J1HXN1 transcription factor PRE6-like7.2e-2878.12Show/hide
Query:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MS+R+ RSRR  +PS+ ISD QIADLISKL QLIP+IRN R SSS VSASKVLQETCN+IRSL+REV DLS+RLSELL STDPE+AQAAI+RSLLM
Subjt:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

A0A6J1JAV8 transcription factor PRE6-like2.9e-3795.83Show/hide
Query:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MSTRT RSRR PLPSTTISDHQIADLISKLHQLIPQIRNRR SSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPE+AQAAILRSLLM
Subjt:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI62.4e-2061.46Show/hide
Query:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MS+R  RSR+    S+ I+D QI+DL+SKL  L+P+ R R  S+  V +S+VLQETCN+IRSL +EVDDLSERLSELLA++D  +AQAAI+RSLLM
Subjt:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

Q0DUR2 Transcription factor ILI62.4e-2061.46Show/hide
Query:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MS+R  RSR+    S+ I+D QI+DL+SKL  L+P+ R R  S+  V +S+VLQETCN+IRSL +EVDDLSERLSELLA++D  +AQAAI+RSLLM
Subjt:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

Q8GW32 Transcription factor PRE62.0e-2267.02Show/hide
Query:  STRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL
        S R+ RSR+    S+ ISD QI+DL+SKL  LIP++R RRS    VSASKVLQETCN+IR+L REVDDLS+RLSELLASTD  +A+AAI+RSLL
Subjt:  STRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL

Q9FLE9 Transcription factor PRE11.0e-1863.29Show/hide
Query:  ISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        ISD+Q+ DL+SKL Q++P+I  RR S    SASKVLQETCN+IR+L REVD+LSERLS+LL S D ++ +AA++RSLLM
Subjt:  ISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

Q9LXG5 Transcription factor PRE29.1e-2061.8Show/hide
Query:  RSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL
        R  R    S+ ISD QI DLISKL Q IP+IR  R  S+TVSASKVLQETCN+IR+L +E DDLS+RL++LL S DP + QAA++RSL+
Subjt:  RSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.4e-2367.02Show/hide
Query:  STRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL
        S R+ RSR+    S+ ISD QI+DL+SKL  LIP++R RRS    VSASKVLQETCN+IR+L REVDDLS+RLSELLASTD  +A+AAI+RSLL
Subjt:  STRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.6e-1961.05Show/hide
Query:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL
        MS R  RSR+    ++ IS+ QI DLI KL QL+P++R+ R S   VSA++VLQ+TCN+IR+L REVDDLSERLSELLA++D  TAQAA++RSLL
Subjt:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL

AT3G47710.1 BANQUO 39.3e-2058.33Show/hide
Query:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        MS+R  RSR+    ++ I+D QI DL+ +LH+L+P++ N R S   VSAS+VLQETC++IR+L +EVDDLSERLS+LL STD  +AQAA++RSLLM
Subjt:  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

AT5G15160.1 BANQUO 26.5e-2161.8Show/hide
Query:  RSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL
        R  R    S+ ISD QI DLISKL Q IP+IR  R  S+TVSASKVLQETCN+IR+L +E DDLS+RL++LL S DP + QAA++RSL+
Subjt:  RSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein7.1e-2063.29Show/hide
Query:  ISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
        ISD+Q+ DL+SKL Q++P+I  RR S    SASKVLQETCN+IR+L REVD+LSERLS+LL S D ++ +AA++RSLLM
Subjt:  ISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCAGAACCCCCCGTTCTAGACGCTGCCCTCTTCCGTCTACCACCATCTCTGACCACCAGATTGCTGATTTAATCTCCAAATTACACCAACTCATCCCT
CAGATTCGTAACCGACGTTCCTCCTCCTCCACGGTATCAGCTTCCAAGGTTCTACAAGAGACTTGCAACTTCATAAGAAGCTTAGAAAGAGAGGTGGATGACTTG
AGCGAGCGACTATCAGAGCTATTGGCGTCCACAGACCCTGAAACTGCTCAGGCTGCCATACTTAGAAGCTTACTTATGTAA
mRNA sequenceShow/hide mRNA sequence
AGCTCGCCTTTCTCCAACAATTCTTCATCTGCCTTTCTCTCACCTCTGCCCTCTGGCCCTCTCTGGATCTCCCCACTTTTCACACACACACACAAATGTCCACCA
GAACCCCCCGTTCTAGACGCTGCCCTCTTCCGTCTACCACCATCTCTGACCACCAGATTGCTGATTTAATCTCCAAATTACACCAACTCATCCCTCAGATTCGTA
ACCGACGTTCCTCCTCCTCCACGGTATCAGCTTCCAAGGTTCTACAAGAGACTTGCAACTTCATAAGAAGCTTAGAAAGAGAGGTGGATGACTTGAGCGAGCGAC
TATCAGAGCTATTGGCGTCCACAGACCCTGAAACTGCTCAGGCTGCCATACTTAGAAGCTTACTTATGTAATGAGCATCACAACTCCATCCCAGGTTTCTTCTTC
TATACACAATTTGGTGCTCAGATGTGGATTTCCCTACACACACCTATTTCAAACCCTCCATCTTTACCCG
Protein sequenceShow/hide protein sequence
MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM