CuGenDBv2

Gene ID	CmoCh04G017530
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	RNA-binding protein
Genome location	Cmo_Chr04:8848907..8850970
RNA-Seq Expression	CmoCh04G017530
Synteny	CmoCh04G017530
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6601448.1 Galactoside 2-alpha-L-fucosyltransferase, partial [Cucurbita argyrosperma subsp. sororia]

1.7e-99

100

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Query:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS
        EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS
Subjt:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS

KAG7032230.1 hypothetical protein SDJN02_06273 [Cucurbita argyrosperma subsp. argyrosperma]

4.9e-99

99.47

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Query:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYV+KFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS
        EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS
Subjt:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS

XP_022151151.1 uncharacterized protein LOC111019147 [Momordica charantia]

5.1e-96

95.74

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Query:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLL RTRKLVKGLAKAEP+WLKAMEQAPPPTFPR+DGTIKTI+LPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGV EE
Subjt:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGW
        EAMAVANMEYRAEKK KKKAY+RLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRG GW
Subjt:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGW

XP_022957544.1 uncharacterized protein LOC111458914 [Cucurbita moschata]

1.7e-99

100

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Query:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS
        EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS
Subjt:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS

XP_022996766.1 uncharacterized protein LOC111491881 [Cucurbita maxima]

2.4e-98

98.41

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Query:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLL+RTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDG +KTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS
        EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS
Subjt:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQQ3 Uncharacterized protein

5.1e-86

89.19

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Query:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLT+TRKLVKGLAKAEP+WLKAMEQAPPP+FPR+DGTIKTITLPEDVYVKKFF+KHPDS Y DAIKFC F+PPPARIF  RVLELKEQGV+EE
Subjt:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRG
        EAM VANMEYRAEKK KK AYSRLKQIARLQGKKPP NPYPSAIKEIQAEERKFVRDRFF+PKIKEIAQRLKEERAAEMQ+R  G
Subjt:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRG

A0A6J1DDQ7 uncharacterized protein LOC111019147

2.5e-96

95.74

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Query:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLL RTRKLVKGLAKAEP+WLKAMEQAPPPTFPR+DGTIKTI+LPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGV EE
Subjt:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGW
        EAMAVANMEYRAEKK KKKAY+RLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRG GW
Subjt:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGW

A0A6J1GZF0 uncharacterized protein LOC111458914

8.2e-100

100

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Query:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS
        EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS
Subjt:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS

A0A6J1KC52 uncharacterized protein LOC111491881

1.2e-98

98.41

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Query:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSFMKGDLL+RTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDG +KTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
Subjt:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS
        EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS
Subjt:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS

A0A7N2LBH9 Uncharacterized protein

1.6e-87

87.23

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Query:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MSF+KGDLLTRTRKLVKGLAK++PIWLKAME APP TFPR DG +K I+LPEDVY+KKFFQKHPDSK+EDAIK CSFDPPPAR+FGLRVL+LKEQGVSEE
Subjt:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGW
        EAMAVA+MEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERK+VRDRFFNPKI EI Q+LKEE+AAE QDR RG GW
Subjt:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGW

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G26750.1 unknown protein

3.3e-53

54.84

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Query:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE
        MS+MKGDLL++TR+LV GLA  EP+WLKAME +PPP FPR +G I+ I LPED YV+KF  KHP +K +D  K  +F P  AR++G RVLELKE G+SE 
Subjt:  MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEE

Query:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGS
        +AM+VANMEY +E+K  KKAY RLK++A +Q K PPP PYPSA K +  + +   +DRF  P ++ +  +LK E+   +QDR  GS
Subjt:  EAMAVANMEYRAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGS

Sequences

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CDS sequence

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ATGTCCTTCATGAAAGGAGACTTGCTAACTAGGACTAGAAAGCTCGTCAAGGGCTTGGCCAAAGCAGAACCTATTTGGCTCAAAGCCATGGAACAGGCGCCACCTCCTAC
ATTTCCTCGAATAGATGGAACAATCAAGACAATCACTCTTCCTGAGGATGTATATGTAAAAAAGTTCTTCCAGAAACATCCAGATTCAAAATACGAAGATGCGATCAAGT
TCTGTAGTTTCGATCCTCCTCCAGCCCGAATATTCGGCCTGCGAGTGCTTGAACTGAAGGAACAGGGTGTCAGTGAGGAGGAAGCCATGGCAGTAGCCAATATGGAATAC
CGGGCAGAGAAAAAGGCGAAAAAGAAGGCTTACTCTCGCTTGAAGCAAATTGCACGTCTTCAAGGGAAGAAACCTCCTCCTAACCCATATCCAAGCGCTATTAAGGAGAT
ACAAGCCGAGGAAAGGAAATTCGTGCGGGATCGTTTCTTCAACCCGAAGATTAAAGAGATCGCTCAAAGGTTGAAGGAGGAGAGAGCAGCTGAAATGCAGGACAGAATGA
GAGGCAGTGGCTGGTCATGA

mRNA sequence

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Protein sequence

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MSFMKGDLLTRTRKLVKGLAKAEPIWLKAMEQAPPPTFPRIDGTIKTITLPEDVYVKKFFQKHPDSKYEDAIKFCSFDPPPARIFGLRVLELKEQGVSEEEAMAVANMEY
RAEKKAKKKAYSRLKQIARLQGKKPPPNPYPSAIKEIQAEERKFVRDRFFNPKIKEIAQRLKEERAAEMQDRMRGSGWS

CmoCh04G017530 (gene) of Cucurbita moschata (Rifu) v1 genome