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CmoCh04G017600 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G017600
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLRRNT_2 domain-containing protein
Genome locationCmo_Chr04:8882617..8883319
RNA-Seq ExpressionCmoCh04G017600
SyntenyCmoCh04G017600
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601453.1 CSC1-like protein, partial [Cucurbita argyrosperma subsp. sororia]5.0e-4474.81Show/hide
Query:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPFPMDEVKIYRSRAFPCDHLHLLKLSVSQIKVTVISSQSKTPSELIKVTVIRAFV
        MGDQEDSWPRLVTSIALRRGARL+SAQSGRAYVIICGSGGLRSRGPFPMDEVKIYRSRAFPCDHLHLLKLSVSQIKVTVISSQSKTPSELIK        
Subjt:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPFPMDEVKIYRSRAFPCDHLHLLKLSVSQIKVTVISSQSKTPSELIKVTVIRAFV

Query:  EVICLGNQGDYSAGGLR---FYSLLKPSLLS
            +G   D S+G ++   +Y +  P L++
Subjt:  EVICLGNQGDYSAGGLR---FYSLLKPSLLS

KAG8651246.1 hypothetical protein MANES_07G105300v8 [Manihot esculenta]1.2e-1070.59Show/hide
Query:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPFPMDE
        M DQE  WPR VTSIALRRGA L+S Q GRAYV+ICG GGLRSRGP+ + +
Subjt:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPFPMDE

RQO90039.1 hypothetical protein POPTR_005G048250 [Populus trichocarpa]1.4e-0976.09Show/hide
Query:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGP
        MGDQ+ SW RLVTSIALRRGARL+S Q+GR YV ICG GG  SRGP
Subjt:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGP

TYH53474.1 hypothetical protein ES332_D09G102600v1 [Gossypium tomentosum]3.5e-1381.63Show/hide
Query:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPFPM
        MGDQED WPR+VT IALRRGA L+S   GRAYVIICGSGGLRSRGPFP+
Subjt:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPFPM

TYJ17978.1 hypothetical protein E1A91_A09G090300v1, partial [Gossypium mustelinum]2.9e-1281.25Show/hide
Query:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPFP
        +GDQED W R+VTSIALRRGA L+S Q GRAYVIICGSGG RSRGPFP
Subjt:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPFP

TrEMBL top hitse value%identityAlignment
A0A2C9VL24 Uncharacterized protein1.2e-1180.85Show/hide
Query:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPF
        MGDQE  WPR VTSIALRRGA L+S Q GRAYVIICG GGLRSRGP+
Subjt:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPF

A0A2C9WC70 Uncharacterized protein6.0e-1176.6Show/hide
Query:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPF
        MGDQ+  WPR+VTSIALRRGA L+S Q GRAYVIIC  GGLRSRGP+
Subjt:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPF

A0A2P2KC36 Uncharacterized protein MANES_02G0872001.2e-1184.78Show/hide
Query:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGP
        MGDQ   WPRLVTSIALRRGA L+S QS RAYVIICGSGGLRSRGP
Subjt:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGP

A0A5D2JFZ1 Uncharacterized protein1.7e-1381.63Show/hide
Query:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPFPM
        MGDQED WPR+VT IALRRGA L+S   GRAYVIICGSGGLRSRGPFP+
Subjt:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPFPM

A0A5D2XV61 Uncharacterized protein (Fragment)1.4e-1281.25Show/hide
Query:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPFP
        +GDQED W R+VTSIALRRGA L+S Q GRAYVIICGSGG RSRGPFP
Subjt:  MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGATCAAGAAGACTCATGGCCTAGGTTGGTGACCTCCATTGCACTTCGGAGGGGTGCCCGCCTAAAGTCTGCCCAAAGTGGCAGAGCCTACGTCATAATTTGTGG
CAGTGGGGGCCTGCGTTCGCGCGGCCCCTTCCCAATGGACGAAGTCAAAATTTACAGATCGCGCGCTTTTCCATGTGATCACTTGCATTTGTTGAAGTTATCTGTCTCGC
AAATCAAGGTGACTGTGATTAGTTCTCAGTCGAAGACACCATCCGAACTGATCAAGGTGACTGTGATTAGGGCATTTGTTGAAGTTATCTGTCTCGGAAATCAAGGCGAC
TATTCAGCTGGAGGGTTGAGATTCTATTCCCTTCTGAAACCATCTTTGTTGTCTTACCTCGTCAATATCTCAGCTCGGCCATCTTTTCTCCATTTTCATTTGCTGTTTTC
ACGACGAAAATGCATCTCTGTTCTTGGACCTGAAAATTCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGGATCAAGAAGACTCATGGCCTAGGTTGGTGACCTCCATTGCACTTCGGAGGGGTGCCCGCCTAAAGTCTGCCCAAAGTGGCAGAGCCTACGTCATAATTTGTGG
CAGTGGGGGCCTGCGTTCGCGCGGCCCCTTCCCAATGGACGAAGTCAAAATTTACAGATCGCGCGCTTTTCCATGTGATCACTTGCATTTGTTGAAGTTATCTGTCTCGC
AAATCAAGGTGACTGTGATTAGTTCTCAGTCGAAGACACCATCCGAACTGATCAAGGTGACTGTGATTAGGGCATTTGTTGAAGTTATCTGTCTCGGAAATCAAGGCGAC
TATTCAGCTGGAGGGTTGAGATTCTATTCCCTTCTGAAACCATCTTTGTTGTCTTACCTCGTCAATATCTCAGCTCGGCCATCTTTTCTCCATTTTCATTTGCTGTTTTC
ACGACGAAAATGCATCTCTGTTCTTGGACCTGAAAATTCCTAA
Protein sequenceShow/hide protein sequence
MGDQEDSWPRLVTSIALRRGARLKSAQSGRAYVIICGSGGLRSRGPFPMDEVKIYRSRAFPCDHLHLLKLSVSQIKVTVISSQSKTPSELIKVTVIRAFVEVICLGNQGD
YSAGGLRFYSLLKPSLLSYLVNISARPSFLHFHLLFSRRKCISVLGPENS