; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G018310 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G018310
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSignal recognition particle receptor subunit beta
Genome locationCmo_Chr04:9198381..9199394
RNA-Seq ExpressionCmoCh04G018310
SyntenyCmoCh04G018310
Gene Ontology termsGO:0045047 - protein targeting to ER (biological process)
GO:0005785 - signal recognition particle receptor complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR019009 - Signal recognition particle receptor, beta subunit
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601513.1 Signal recognition particle receptor subunit beta, partial [Cucurbita argyrosperma subsp. sororia]2.7e-4898.11Show/hide
Query:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
        S YLYDILTNA+VVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
Subjt:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ

Query:  FIREYV
        FIREYV
Subjt:  FIREYV

KAG7032294.1 Signal recognition particle receptor subunit beta [Cucurbita argyrosperma subsp. argyrosperma]8.0e-4898.11Show/hide
Query:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
        S YLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKL VSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
Subjt:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ

Query:  FIREYV
        FIREYV
Subjt:  FIREYV

XP_022956904.1 signal recognition particle receptor subunit beta-like [Cucurbita moschata]1.2e-4899.06Show/hide
Query:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
        S YLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
Subjt:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ

Query:  FIREYV
        FIREYV
Subjt:  FIREYV

XP_022994800.1 signal recognition particle receptor subunit beta-like [Cucurbita maxima]1.4e-4798.11Show/hide
Query:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
        S YLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
Subjt:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ

Query:  FIREYV
        FIRE V
Subjt:  FIREYV

XP_023542733.1 signal recognition particle receptor subunit beta-like [Cucurbita pepo subsp. pepo]4.0e-4797.17Show/hide
Query:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
        S YLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGV GKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
Subjt:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ

Query:  FIREYV
        FIRE+V
Subjt:  FIREYV

TrEMBL top hitse value%identityAlignment
A0A0A0KSA6 Signal recognition particle receptor subunit beta2.0e-4491.51Show/hide
Query:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
        S YLYDILTNASVVKKKIPVLILCNK DKVTAHTKEFIN+QMEKEIDKLRVSRSAIS ADI+NDFTLG+PGKAFSFTQCHNKV VAEASGL GEVSEVEQ
Subjt:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ

Query:  FIREYV
        FIRE V
Subjt:  FIREYV

A0A6J1FZD8 Signal recognition particle receptor subunit beta2.8e-4693.52Show/hide
Query:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
        S YLYDILTNASVVKKKIPVLILCNK DKVTAHTKEFIN+QMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKV+VAEASGL GEVSEVEQ
Subjt:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ

Query:  FIREYVYS
        FIRE V S
Subjt:  FIREYVYS

A0A6J1GZ21 Signal recognition particle receptor subunit beta6.0e-4999.06Show/hide
Query:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
        S YLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
Subjt:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ

Query:  FIREYV
        FIREYV
Subjt:  FIREYV

A0A6J1HQK9 Signal recognition particle receptor subunit beta1.8e-4591.67Show/hide
Query:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
        S YLYDILTNASVVKKKIPVLILCNK DKVTAHTKEFIN+QMEKEIDKLRVSRSAISDADISNDF +GVPGKAFSFTQCHNKV+VAEASGL GEVSEVEQ
Subjt:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ

Query:  FIREYVYS
        FIRE V S
Subjt:  FIREYVYS

A0A6J1K2C6 Signal recognition particle receptor subunit beta6.6e-4898.11Show/hide
Query:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
        S YLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
Subjt:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ

Query:  FIREYV
        FIRE V
Subjt:  FIREYV

SwissProt top hitse value%identityAlignment
P47758 Signal recognition particle receptor subunit beta1.9e-0737.23Show/hide
Query:  YLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAIS---DADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKG
        +LY +L ++  +K    +LI CNK D   A + + I +Q+EKE++ LRV+RSA     D+  +    LG  GK F F+Q   KV   E S   G
Subjt:  YLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAIS---DADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKG

Q4FZX7 Signal recognition particle receptor subunit beta5.4e-0736.17Show/hide
Query:  YLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAIS---DADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKG
        +LY +L ++  +K     L+ CNK D   A + + I +Q+EKE++ LRV+RSA     D+  +    LG  GK F F+Q   KV   E S   G
Subjt:  YLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAIS---DADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKG

Q54XX1 Signal recognition particle receptor subunit beta1.4e-1039.09Show/hide
Query:  HSTIESTYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSA----ISDADISNDFTLGVPGKAFSFTQCHNKVTVA--EAS
        +ST E+ YLYDILTN SV +KKIPVL+  NK D  +    E +   +E+E+D LR +R A    +   +   D  LG+ G  F F    N V  +   AS
Subjt:  HSTIESTYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSA----ISDADISNDFTLGVPGKAFSFTQCHNKVTVA--EAS

Query:  GLKGEVSEVE
           GE+ E++
Subjt:  GLKGEVSEVE

Q9Y5M8 Signal recognition particle receptor subunit beta5.4e-0736.27Show/hide
Query:  YLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAIS---DADISNDFTLGVPGKAFSFTQCHNKVTVAE--ASGLKGEVSE
        +LY +L ++  +K     LI CNK D   A + + I +Q+EKE++ LRV+RSA     D+  +    LG  GK F F+Q   KV   E  A G +G+V  
Subjt:  YLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAIS---DADISNDFTLGVPGKAFSFTQCHNKVTVAE--ASGLKGEVSE

Query:  VE
         +
Subjt:  VE

Arabidopsis top hitse value%identityAlignment
AT2G18770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein5.3e-4278.3Show/hide
Query:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
        S YLYDILTNASV+K K PVL+ CNK DKVTAHTKEFI KQMEKEIDKLRVSRSAIS ADI+NDFTLG+ G+ FSF+ CHNKVTVAEASGL GE  +V++
Subjt:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ

Query:  FIREYV
        FIRE+V
Subjt:  FIREYV

AT5G05670.1 signal recognition particle binding1.7e-4074.53Show/hide
Query:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
        S YLY+ILTNA+VVKKKIPVL+ CNK DK+TAHTKEFI KQMEKEI+KLR SRSA+S ADI+NDFT+G+ G+ FSFT C NKVTVAEASGL GE  ++E 
Subjt:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ

Query:  FIREYV
        FIREY+
Subjt:  FIREYV

AT5G05670.2 signal recognition particle binding1.7e-4074.53Show/hide
Query:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ
        S YLY+ILTNA+VVKKKIPVL+ CNK DK+TAHTKEFI KQMEKEI+KLR SRSA+S ADI+NDFT+G+ G+ FSFT C NKVTVAEASGL GE  ++E 
Subjt:  STYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVAEASGLKGEVSEVEQ

Query:  FIREYV
        FIREY+
Subjt:  FIREYV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTACTTAAGCTTGAGTCTCCTGAGTTCTCCCAATTCTCTCGAGAAAACATTCCATAGCACCATAGAAAGCACGTACCTCTATGACATCCTGACTAATGCGAGTGT
TGTGAAGAAGAAAATCCCTGTTCTGATACTATGCAACAAAGCAGACAAGGTGACAGCCCACACAAAGGAGTTTATTAACAAGCAGATGGAAAAAGAGATCGACAAGTTAC
GAGTATCGAGAAGCGCAATCTCAGATGCTGATATCTCAAATGACTTCACACTAGGAGTACCTGGAAAAGCTTTTTCGTTCACACAGTGCCATAACAAAGTAACAGTTGCT
GAAGCCTCTGGTTTGAAGGGCGAAGTATCTGAGGTGGAGCAATTTATAAGGGAATACGTGTACAGTCGGGTTAACAATATCAAAAAGGTCTCCTTCCCGATCTTCGTCAT
CGTCGGAGCTGTAGTTAGATTCGTCGCGATCCTGACTTTCAAGGTTGTCATCTGGGCTGCTGCTGTCATCTTCACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTACTTAAGCTTGAGTCTCCTGAGTTCTCCCAATTCTCTCGAGAAAACATTCCATAGCACCATAGAAAGCACGTACCTCTATGACATCCTGACTAATGCGAGTGT
TGTGAAGAAGAAAATCCCTGTTCTGATACTATGCAACAAAGCAGACAAGGTGACAGCCCACACAAAGGAGTTTATTAACAAGCAGATGGAAAAAGAGATCGACAAGTTAC
GAGTATCGAGAAGCGCAATCTCAGATGCTGATATCTCAAATGACTTCACACTAGGAGTACCTGGAAAAGCTTTTTCGTTCACACAGTGCCATAACAAAGTAACAGTTGCT
GAAGCCTCTGGTTTGAAGGGCGAAGTATCTGAGGTGGAGCAATTTATAAGGGAATACGTGTACAGTCGGGTTAACAATATCAAAAAGGTCTCCTTCCCGATCTTCGTCAT
CGTCGGAGCTGTAGTTAGATTCGTCGCGATCCTGACTTTCAAGGTTGTCATCTGGGCTGCTGCTGTCATCTTCACTTGA
Protein sequenceShow/hide protein sequence
MCYLSLSLLSSPNSLEKTFHSTIESTYLYDILTNASVVKKKIPVLILCNKADKVTAHTKEFINKQMEKEIDKLRVSRSAISDADISNDFTLGVPGKAFSFTQCHNKVTVA
EASGLKGEVSEVEQFIREYVYSRVNNIKKVSFPIFVIVGAVVRFVAILTFKVVIWAAAVIFT