; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G018320 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G018320
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSignal recognition particle receptor subunit beta
Genome locationCmo_Chr04:9199482..9200609
RNA-Seq ExpressionCmoCh04G018320
SyntenyCmoCh04G018320
Gene Ontology termsGO:0045047 - protein targeting to ER (biological process)
GO:0005785 - signal recognition particle receptor complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR019009 - Signal recognition particle receptor, beta subunit
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601513.1 Signal recognition particle receptor subunit beta, partial [Cucurbita argyrosperma subsp. sororia]1.5e-8098.75Show/hide
Query:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
        MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTV+FYQLRDGSSHQGTVTSMEPNEG
Subjt:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG

Query:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
        TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCR ASE
Subjt:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE

KAG7032294.1 Signal recognition particle receptor subunit beta [Cucurbita argyrosperma subsp. argyrosperma]8.7e-8199.38Show/hide
Query:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
        MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
Subjt:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG

Query:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
        TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCR ASE
Subjt:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE

XP_008446189.1 PREDICTED: signal recognition particle receptor subunit beta-like [Cucumis melo]1.7e-7693.75Show/hide
Query:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
        MEG EQWKVQVEQLKV MEQWLE+GLE VHQIPPIQLYVGV VLLFTTLLLLLTRLFKRRKSN I+LSGLSGSGKT+LFYQLRDGSSHQGTVTSMEPNEG
Subjt:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG

Query:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
        TFVLHSEI KKDKLKPVHLVDVPGHSRLRAKLD+FLPQAAGVVFVVDALDFLPNCRAASE
Subjt:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE

XP_022956904.1 signal recognition particle receptor subunit beta-like [Cucurbita moschata]3.0e-81100Show/hide
Query:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
        MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
Subjt:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG

Query:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
        TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
Subjt:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE

XP_022994800.1 signal recognition particle receptor subunit beta-like [Cucurbita maxima]4.3e-8098.75Show/hide
Query:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
        MEGAEQWKVQVEQLKVHME WLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLF RRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
Subjt:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG

Query:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
        TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
Subjt:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE

TrEMBL top hitse value%identityAlignment
A0A0A0KSA6 Signal recognition particle receptor subunit beta8.2e-7793.75Show/hide
Query:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
        MEG EQWKVQVEQLKV MEQWLEQGLE VHQIPPIQLYVGV VLLFTTLLLL TRLFKRRKSN I+LSGLSGSGKT+LFYQLRDGSSHQGTVTSMEPNEG
Subjt:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG

Query:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
        TFVLHSEI KKDKLKPVHLVDVPGHSRLRAKLD+FLPQAAGVVFVVDALDFLPNCRAASE
Subjt:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE

A0A1S3BEG3 Signal recognition particle receptor subunit beta8.2e-7793.75Show/hide
Query:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
        MEG EQWKVQVEQLKV MEQWLE+GLE VHQIPPIQLYVGV VLLFTTLLLLLTRLFKRRKSN I+LSGLSGSGKT+LFYQLRDGSSHQGTVTSMEPNEG
Subjt:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG

Query:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
        TFVLHSEI KKDKLKPVHLVDVPGHSRLRAKLD+FLPQAAGVVFVVDALDFLPNCRAASE
Subjt:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE

A0A6J1GZ21 Signal recognition particle receptor subunit beta1.4e-81100Show/hide
Query:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
        MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
Subjt:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG

Query:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
        TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
Subjt:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE

A0A6J1K2C6 Signal recognition particle receptor subunit beta2.1e-8098.75Show/hide
Query:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
        MEGAEQWKVQVEQLKVHME WLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLF RRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
Subjt:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG

Query:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
        TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
Subjt:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE

E5GBI2 Signal recognition particle receptor subunit beta8.2e-7793.75Show/hide
Query:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG
        MEG EQWKVQVEQLKV MEQWLE+GLE VHQIPPIQLYVGV VLLFTTLLLLLTRLFKRRKSN I+LSGLSGSGKT+LFYQLRDGSSHQGTVTSMEPNEG
Subjt:  MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEG

Query:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
        TFVLHSEI KKDKLKPVHLVDVPGHSRLRAKLD+FLPQAAGVVFVVDALDFLPNCRAASE
Subjt:  TFVLHSEITKKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE

SwissProt top hitse value%identityAlignment
P47758 Signal recognition particle receptor subunit beta1.5e-0630.56Show/hide
Query:  EQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKS-NIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDKLKPV
        + +L+   + + Q  P  L V VA+L     L+    ++ R+ S   +L  GL  SGKT+LF +L  G  ++ T TS+  +   + +++     ++   +
Subjt:  EQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKS-NIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDKLKPV

Query:  HLVDVPGHSRLRAK-LDEFLPQAAGVVFVVDALDFLPNCRAASE
         L+D+PGH  LR + LD F   A  VVFVVD+  F    +  +E
Subjt:  HLVDVPGHSRLRAK-LDEFLPQAAGVVFVVDALDFLPNCRAASE

Q4FZX7 Signal recognition particle receptor subunit beta3.9e-0731.25Show/hide
Query:  EQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKS-NIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDKLKPV
        + +L+   + + Q  P  L V VAVL     L+    ++ R+ S   +L  GL  SGKT+LF +L  G  ++ T TS+  +   + +++     ++   +
Subjt:  EQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKS-NIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDKLKPV

Query:  HLVDVPGHSRLRAK-LDEFLPQAAGVVFVVDALDFLPNCRAASE
         L+D+PGH  LR + LD F   A  VVFVVD+  F    +  +E
Subjt:  HLVDVPGHSRLRAK-LDEFLPQAAGVVFVVDALDFLPNCRAASE

Q9Y5M8 Signal recognition particle receptor subunit beta3.3e-0631.72Show/hide
Query:  EQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSN--IILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDKLKP
        + +L+   + + Q  P  L V VAVL    L L+  +L + R+S+   +LL GL  SGKT+LF +L  G  ++ T TS+  +   + +++     ++   
Subjt:  EQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSN--IILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITKKDKLKP

Query:  VHLVDVPGHSRLRAK-LDEFLPQAAGVVFVVDALDFLPNCRAASE
        + L+D+PGH  LR + L+ F   A  +VFVVD+  F    +  +E
Subjt:  VHLVDVPGHSRLRAK-LDEFLPQAAGVVFVVDALDFLPNCRAASE

Arabidopsis top hitse value%identityAlignment
AT2G18770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein4.6e-5673.51Show/hide
Query:  VEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSE-IT
        +E LK+  EQW +QGLE V +IPP QLY  + VLL  T+ LL  RLF+R KSN +LLSGLSGSGKTVLFYQLRDGSSHQG VTSMEPNEGTFVLH+E  T
Subjt:  VEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSE-IT

Query:  KKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
        KK K+KPVHL+DVPGHSRL +KL+E+LP+AA VVFVVDAL+FLPN RAASE
Subjt:  KKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE

AT5G05670.1 signal recognition particle binding3.1e-6076.82Show/hide
Query:  VEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLT-RLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEIT
        +E LK+  EQW  QG+E + +IPP QLY  + VLLFTT+LL L+ RL +R KSN +LLSGL+GSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSE T
Subjt:  VEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLT-RLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEIT

Query:  KKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
        KK K+KPVHLVDVPGHSRLR KL+EFLPQAA +VFVVDAL+FLPNCRAASE
Subjt:  KKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE

AT5G05670.2 signal recognition particle binding3.1e-6076.82Show/hide
Query:  VEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLT-RLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEIT
        +E LK+  EQW  QG+E + +IPP QLY  + VLLFTT+LL L+ RL +R KSN +LLSGL+GSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSE T
Subjt:  VEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLT-RLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEIT

Query:  KKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE
        KK K+KPVHLVDVPGHSRLR KL+EFLPQAA +VFVVDAL+FLPNCRAASE
Subjt:  KKDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGTGCGGAACAGTGGAAGGTTCAGGTGGAGCAATTGAAAGTCCATATGGAGCAATGGCTAGAACAAGGCTTGGAGCTTGTTCACCAAATACCCCCAATTCAACT
CTACGTTGGGGTTGCTGTGTTGTTATTTACCACTCTGCTTCTTTTATTGACTCGCTTGTTTAAGCGCAGAAAATCGAACATCATTCTCCTCAGTGGGCTCAGTGGAAGTG
GGAAAACTGTTCTTTTTTATCAACTTCGTGATGGTTCTTCCCATCAGGGTACTGTTACATCAATGGAACCTAATGAGGGTACTTTTGTGCTTCATTCTGAAATAACCAAG
AAGGACAAACTGAAGCCTGTTCATCTTGTTGATGTTCCTGGGCATTCTCGCCTTCGAGCCAAACTAGATGAATTTCTGCCTCAAGCAGCTGGTGTAGTCTTTGTGGTGGA
TGCTTTAGATTTTTTGCCCAACTGTCGTGCAGCTTCAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGTGCGGAACAGTGGAAGGTTCAGGTGGAGCAATTGAAAGTCCATATGGAGCAATGGCTAGAACAAGGCTTGGAGCTTGTTCACCAAATACCCCCAATTCAACT
CTACGTTGGGGTTGCTGTGTTGTTATTTACCACTCTGCTTCTTTTATTGACTCGCTTGTTTAAGCGCAGAAAATCGAACATCATTCTCCTCAGTGGGCTCAGTGGAAGTG
GGAAAACTGTTCTTTTTTATCAACTTCGTGATGGTTCTTCCCATCAGGGTACTGTTACATCAATGGAACCTAATGAGGGTACTTTTGTGCTTCATTCTGAAATAACCAAG
AAGGACAAACTGAAGCCTGTTCATCTTGTTGATGTTCCTGGGCATTCTCGCCTTCGAGCCAAACTAGATGAATTTCTGCCTCAAGCAGCTGGTGTAGTCTTTGTGGTGGA
TGCTTTAGATTTTTTGCCCAACTGTCGTGCAGCTTCAGAGTAA
Protein sequenceShow/hide protein sequence
MEGAEQWKVQVEQLKVHMEQWLEQGLELVHQIPPIQLYVGVAVLLFTTLLLLLTRLFKRRKSNIILLSGLSGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSEITK
KDKLKPVHLVDVPGHSRLRAKLDEFLPQAAGVVFVVDALDFLPNCRAASE