CuGenDBv2

Gene ID	CmoCh04G018890
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	protein GLE1 isoform X1
Genome location	Cmo_Chr04:9623089..9625074
RNA-Seq Expression	CmoCh04G018890
Synteny	CmoCh04G018890
Gene Ontology terms	GO:0006446 - regulation of translational initiation (biological process) GO:0006449 - regulation of translational termination (biological process) GO:0015031 - protein transport (biological process) GO:0016973 - poly(A)+ mRNA export from nucleus (biological process) GO:0005737 - cytoplasm (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0044614 - nuclear pore cytoplasmic filaments (cellular component) GO:0000822 - inositol hexakisphosphate binding (molecular function) GO:0005543 - phospholipid binding (molecular function) GO:0031369 - translation initiation factor binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6601557.1 Protein GLE1, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-73

89.29

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Query:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCS--------RDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQG
        MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCS        RDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQG
Subjt:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCS--------RDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQG

Query:  SNAKRFNCDGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG---TNL
        SNAKRFNCDGCFLSDSEDSDNESTL TRAHLMEDVDLVESSLAQLTDDHLLNTK   R + G   TNL
Subjt:  SNAKRFNCDGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG---TNL

KAG7032320.1 Protein GLE1, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.4e-72

88.62

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Query:  SPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCS--------RDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGS
        SPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCS        RDFPLIKTTKR SKPFVMGVYEDELQNIFNDGEVVCDQGS
Subjt:  SPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCS--------RDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGS

Query:  NAKRFNCDGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG---TNL
        NAKRFNCDGCFLSDSEDSDNESTL TRAHLMEDVDLVESSLAQLTDDHLLNTK   R + G   TNL
Subjt:  NAKRFNCDGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG---TNL

XP_022957181.1 protein GLE1 isoform X1 [Cucurbita moschata]

1.3e-76

94.38

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Query:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC
        MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC
Subjt:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC

Query:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG---TNL
        DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTK   R + G   TNL
Subjt:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG---TNL

XP_022997611.1 protein GLE1 isoform X1 [Cucurbita maxima]

6.9e-73

91.25

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Query:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC
        MSPVKLTLRCPSRVGQVTADPQPDFSFDDLR ELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIF+DGEVVCDQGSNAKRFNC
Subjt:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC

Query:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG---TNL
        DGCFLSDSEDSDNE+TL TRAHLMEDVDLVESSLAQLT DHLLNTK   R + G   TNL
Subjt:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG---TNL

XP_023544608.1 protein GLE1 isoform X1 [Cucurbita pepo subsp. pepo]

1.1e-75

93.75

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Query:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC
        MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC
Subjt:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC

Query:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG---TNL
        DGCFLSDSEDSDNESTL TRAHLMEDVDLVESSLAQLTDDHLLNTK   R + G   TNL
Subjt:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG---TNL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BEB8 protein GLE1

1.3e-56

74.68

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Query:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC
        MSPVKLTLRCPS++GQV  DP PDFSFDDLR+EL+SLEEKL  ST PF KTCSRDFP+ KT KRSSKPF+MGVYEDEL+ IF+D EVVCD  SNA RFNC
Subjt:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC

Query:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG
        DG FLSDSEDSDNESTL  +A+L ED+DLVESSLA+LT DH+LN K   R + G
Subjt:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG

A0A5A7SUC8 Protein GLE1

1.3e-56

74.68

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Query:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC
        MSPVKLTLRCPS++GQV  DP PDFSFDDLR+EL+SLEEKL  ST PF KTCSRDFP+ KT KRSSKPF+MGVYEDEL+ IF+D EVVCD  SNA RFNC
Subjt:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC

Query:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG
        DG FLSDSEDSDNESTL  +A+L ED+DLVESSLA+LT DH+LN K   R + G
Subjt:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG

A0A6J1DD13 protein GLE1 isoform X1

7.0e-55

78.08

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Query:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC
        M PVKLTLRCPSRVGQVT DPQPDFSFDDLRVEL SLEEKLKTS+TPFTKT SRDF + KT +RSS+PFVMGVYEDELQ+IF+DGE V DQ      FNC
Subjt:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC

Query:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTK
        D  FLSDSEDSDNES++G RA+LMEDVDLVES +AQLT DH LN K
Subjt:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTK

A0A6J1GYI2 protein GLE1 isoform X1

6.5e-77

94.38

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Query:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC
        MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC
Subjt:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC

Query:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG---TNL
        DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTK   R + G   TNL
Subjt:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG---TNL

A0A6J1K7Y4 protein GLE1 isoform X1

3.3e-73

91.25

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Query:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC
        MSPVKLTLRCPSRVGQVTADPQPDFSFDDLR ELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIF+DGEVVCDQGSNAKRFNC
Subjt:  MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNC

Query:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG---TNL
        DGCFLSDSEDSDNE+TL TRAHLMEDVDLVESSLAQLT DHLLNTK   R + G   TNL
Subjt:  DGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSG---TNL

SwissProt top hits

e value

%identity

Alignment

Q0WPZ7 Protein GLE1

1.1e-07

30.2

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Query:  CPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTST---TPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSN---------AKR
        CP  V  ++ DP+P+++F+ L  E+ S+E+KL   +    P T T  R         R    FVM V EDE+++  ++GE   D+             KR
Subjt:  CPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTST---TPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSN---------AKR

Query:  FNCDGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTK
        F CD  +LSD  D + +       ++M  + L ES+L ++ +DH    K
Subjt:  FNCDGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTK

Arabidopsis top hits

e value

%identity

Alignment

AT1G13120.1 null

7.5e-09

30.2

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Query:  CPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTST---TPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSN---------AKR
        CP  V  ++ DP+P+++F+ L  E+ S+E+KL   +    P T T  R         R    FVM V EDE+++  ++GE   D+             KR
Subjt:  CPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTST---TPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSN---------AKR

Query:  FNCDGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTK
        F CD  +LSD  D + +       ++M  + L ES+L ++ +DH    K
Subjt:  FNCDGCFLSDSEDSDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTK

AT4G05523.1 BEST Arabidopsis thaliana protein match is: embryo defective 1745 (TAIR:AT1G13120.1)

1.6e-06

34.26

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Query:  CPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDEL---QNIFNDGEVVCDQGSNAKRFNCDGCFLS
        CP  V   + DP+P+ SFD L  E  S E+KL      FTK      P  KTT R+   FVM V ED++   +++ N+ +        ++   CD  +LS
Subjt:  CPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDEL---QNIFNDGEVVCDQGSNAKRFNCDGCFLS

Query:  DSEDSDNE
        D ++ D+E
Subjt:  DSEDSDNE

Sequences

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CDS sequence

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ATGAGTCCGGTGAAGTTGACCCTTCGCTGCCCTTCTAGGGTAGGACAAGTTACAGCTGATCCACAGCCTGATTTTAGCTTTGATGATTTGCGAGTGGAACTTTATTCTTT
GGAGGAGAAGCTAAAGACGTCCACAACTCCTTTCACAAAAACATGTTCACGAGACTTTCCACTCATAAAAACTACGAAGAGAAGCTCCAAGCCTTTTGTAATGGGTGTGT
ATGAGGATGAGCTACAGAACATATTTAACGATGGTGAAGTAGTTTGTGACCAAGGTTCAAATGCTAAGCGCTTTAATTGTGATGGATGTTTTCTCAGCGATAGCGAAGAT
TCTGACAATGAATCAACTCTTGGAACACGAGCCCATCTGATGGAGGACGTGGATTTAGTGGAAAGTTCTTTAGCTCAGCTAACAGATGATCATCTGCTTAACACGAAGTT
TATAAACAGGAGGAAATCAGGAACCAACTTGGAAGGTTGGAGACCAACCTCACTACTTTAA

mRNA sequence

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AAATCACTTGGAAGAACTCAAGTAATTTAGGAAATGGAAGTGTGAAGTCTTTAGTCGCGAGGGTTCTCTTCTTCACTTTTCTGAACCTTCTTCTTCGGCACCTCTTCTTG
CTGGACGGTGAGCCGCGGTGCTGTTCCGTCGATTGTGCAAGAGGAAGACACAGCTGCTCTTTGTCTCGTGATCCGATGAATTGCTGATTTCAACTATGTTTTTAAAAAAA
AATTCTCGAATCGATATCTCTCTCTGAAGTTTCAGACTAGTTGTTTCTCCTCCGGTTCCGATTGTCCTGGGACTGATTCTTTTTCTCTTCTGCACAGCCCCGGATCCGCC
AGGGGCGTCCTTTTGGTCATTGAAGCATTCGAAGTTTGCTTATTGAAGCCATGAGTCCGGTGAAGTTGACCCTTCGCTGCCCTTCTAGGGTAGGACAAGTTACAGCTGAT
CCACAGCCTGATTTTAGCTTTGATGATTTGCGAGTGGAACTTTATTCTTTGGAGGAGAAGCTAAAGACGTCCACAACTCCTTTCACAAAAACATGTTCACGAGACTTTCC
ACTCATAAAAACTACGAAGAGAAGCTCCAAGCCTTTTGTAATGGGTGTGTATGAGGATGAGCTACAGAACATATTTAACGATGGTGAAGTAGTTTGTGACCAAGGTTCAA
ATGCTAAGCGCTTTAATTGTGATGGATGTTTTCTCAGCGATAGCGAAGATTCTGACAATGAATCAACTCTTGGAACACGAGCCCATCTGATGGAGGACGTGGATTTAGTG
GAAAGTTCTTTAGCTCAGCTAACAGATGATCATCTGCTTAACACGAAGTTTATAAACAGGAGGAAATCAGGAACCAACTTGGAAGGTTGGAGACCAACCTCACTACTTTA
A

Protein sequence

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MSPVKLTLRCPSRVGQVTADPQPDFSFDDLRVELYSLEEKLKTSTTPFTKTCSRDFPLIKTTKRSSKPFVMGVYEDELQNIFNDGEVVCDQGSNAKRFNCDGCFLSDSED
SDNESTLGTRAHLMEDVDLVESSLAQLTDDHLLNTKFINRRKSGTNLEGWRPTSLL

CmoCh04G018890 (gene) of Cucurbita moschata (Rifu) v1 genome