CuGenDBv2

Gene ID	CmoCh04G018980
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	photosystem II core complex proteins psbY, chloroplastic-like
Genome location	Cmo_Chr04:9673233..9673769
RNA-Seq Expression	CmoCh04G018980
Synteny	CmoCh04G018980
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7032326.1 Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.6e-86

98.88

Show/hide

Query:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTPP LLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGL+GTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_008446112.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo]

7.9e-75

90.5

Show/hide

Query:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP    P LLPSKPT PISLP P P K SLAG+AIAGAIFST S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_022956891.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita moschata]

4.1e-87

100

Show/hide

Query:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_022998705.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]

2.9e-85

98.88

Show/hide

Query:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTP PLLPSKPT PISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_023511769.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita pepo subsp. pepo]

4.5e-86

98.31

Show/hide

Query:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTPPPLLPSKPTTP+SLP+PSPKSSLAGSAIAGAIFST SFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTG2 Uncharacterized protein

1.3e-70

87.85

Show/hide

Query:  MAATMATMAILNAKCFTP-NRTPPPLLPSKPTT-PISLPIP-SPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
        MAATMATMAILNAKCFTP N+T  PLLPSKP T PISLP+P   K SLAG+AIAGAIFST S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
Subjt:  MAATMATMAILNAKCFTP-NRTPPPLLPSKPTT-PISLPIP-SPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN

Query:  ILQPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        ILQPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRSE
Subjt:  ILQPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A1S3BDT7 photosystem II core complex proteins psbY, chloroplastic-like

3.8e-75

90.5

Show/hide

Query:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP    P LLPSKPT PISLP P P K SLAG+AIAGAIFST S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A5A7SY80 Photosystem II core complex proteins psbY

3.8e-75

90.5

Show/hide

Query:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP    P LLPSKPT PISLP P P K SLAG+AIAGAIFST S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVI GLGLGGLLASGLVGTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A6J1GXR1 photosystem II core complex proteins psbY, chloroplastic-like

2.0e-87

100

Show/hide

Query:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A6J1KD85 photosystem II core complex proteins psbY, chloroplastic-like

1.4e-85

98.88

Show/hide

Query:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTP PLLPSKPT PISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

7.5e-44

58.12

Show/hide

Query:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTP-ISLPI-PSPKSSLA--GSAIAGAIFSTFSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC + N +PP L     + P ISLP  P P  SLA   +A+AGA+FS+ S+++ A A QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTP-ISLPI-PSPKSSLA--GSAIAGAIFSTFSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIAGLGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++ GLG+ GGL ASGL+  P      A AA AS+D+RGQLLLIVV PA+LWVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIAGLGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

4.9e-43

59.3

Show/hide

Query:  MAATMA-TMAILNAKCFTPNRTPPPLLPSKPTT-PISL-PIPSPKSSL--------AGSAIAGAIFSTFSFTDAAFAAQQIADLA----EGDNRGLALLL
        MAATMA TMA+LN KC T N         KPT+ PISL P+    S L           AIAGA+F+T    D AFA QQ+AD+A      DNRGLALLL
Subjt:  MAATMA-TMAILNAKCFTPNRTPPPLLPSKPTT-PISL-PIPSPKSSL--------AGSAIAGAIFSTFSFTDAAFAAQQIADLA----EGDNRGLALLL

Query:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIAGLGLGGLLASG-LVGTPEAMAAE----ASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        P+IPA+ WVLFNILQPALNQIN+MR E KA I GLGL GL  SG L+ TPEA AA       +D RG LLL+VV PAI WVL+NILQPALNQLN+MRS+
Subjt:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIAGLGLGGLLASG-LVGTPEAMAAE----ASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

5.3e-45

58.12

Show/hide

Query:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTP-ISLPI-PSPKSSLA--GSAIAGAIFSTFSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC + N +PP L     + P ISLP  P P  SLA   +A+AGA+FS+ S+++ A A QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPNRTPPPLLPSKPTTP-ISLPI-PSPKSSLA--GSAIAGAIFSTFSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIAGLGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++ GLG+ GGL ASGL+  P      A AA AS+D+RGQLLLIVV PA+LWVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIAGLGL-GGLLASGLVGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCCACCACTCCTTCCCTCAAAGCCCACAACACCCATCTCCCTCCC
AATCCCCTCACCCAAATCTTCCCTCGCTGGATCCGCCATTGCCGGAGCCATCTTCTCCACTTTCAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAG
CCGAGGGCGACAACCGTGGGCTGGCTCTGTTGCTGCCGCTCATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCGGCGCTGAATCAGATCAACCGGATGCGG
ACTGAGAAGGCGGTGATTGCCGGATTGGGTCTCGGCGGGCTGTTGGCCTCTGGGCTGGTGGGGACGCCGGAGGCAATGGCGGCGGAGGCTTCCAACGACGCGAGAGGACA
GCTGCTGCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMR
TEKAVIAGLGLGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

CmoCh04G018980 (gene) of Cucurbita moschata (Rifu) v1 genome