| GenBank top hits | e value | %identity | Alignment |
|---|
| ADJ18449.1 gag/pol protein, partial [Bryonia dioica] | 4.9e-211 | 52.81 | Show/hide |
Query: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
M SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLTEECP P NANRT R+AYDRW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+
Subjt: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
Query: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
MFGQPS+SLRHEAIK+IY RMKEGTSVREHVLDMM+HFN+AE N IDE +QVSFI+ SLPKSF F+TN +NKIE+NLT LLNELQ +Q+L +KG
Subjt: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
Query: QTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKGKNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK----------------
+ EANVA++K K +RGSSS+NK GPS ++ MKKKGKG K P K K + ADKGKCFHCN++GHWKRNCPKYLAEKKAEK
Subjt: QTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKGKNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK----------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ------------------------------------------------------------------------------------------------TQQG
T +G
Subjt: ------------------------------------------------------------------------------------------------TQQG
Query: YRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
RAK LELVH+DLCGPMNVKARG YEYFISFIDD+SRYG++YL+HHKSE+ EKF+EYK EV+N +GKTIKTLRSDRGGEYMD +FQDY+IE GI+SQLS
Subjt: YRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
Query: APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK---------------------------------
AP PQQNGVSERRNRTLLDMVRSMMS+AQLPD FWGYA+ETA +ILN VP+KSVLETPYELWKGRK
Subjt: APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK---------------------------------
Query: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
GYPKE++GGLFY PQEN+VFVSTNATFLEEDH RNHQPRSK+VL E+ K ATDK S ST+VVD A+ S QSH SQELR+PRRSGRV+ QP+RY
Subjt: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
Query: LGLAETQVIIPDDGVEDP
LGL ETQ+IIPDDGVEDP
Subjt: LGLAETQVIIPDDGVEDP
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| KAA0026233.1 gag/pol protein [Cucumis melo var. makuwa] | 1.2e-204 | 61.49 | Show/hide |
Query: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
++++ + +LA++KLNG+NY +WK+ +N +L+IDDL+FVL E+CP P +NA RT R+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+
Subjt: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
Query: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+MMVHFNVA NEAVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+ KG
Subjt: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
Query: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK---------TQQG
Q GEANVA S +K RGS+S KS PS+S + KKK G+G K + + K KA KG CF CN+ GHWKRNCPKYLA+KK K T +G
Subjt: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK---------TQQG
Query: YRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
+RAKE LELVH+DLCGPMNVKARG +EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+N L KTIKT RSDRGGEYMDL+FQ+Y++E GI SQLS
Subjt: YRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
Query: APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK---------------------------------
AP PQQNGVSERRNRTLLDMVRSMMS+A LP+ FWGYAV+TA YILN VP+KSV ETP +LW G K
Subjt: APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK---------------------------------
Query: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
GYPK T+GG FYDP++N+VFVSTNATFLEEDH+R H+PRSK+VL+E+SKE T+ +TRVV++ S RVV +S ++H Q LR PRRSGRV P RY
Subjt: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
Query: LGLAETQVIIPDDGVEDP
+ L ET +I D +EDP
Subjt: LGLAETQVIIPDDGVEDP
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| KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa] | 1.1e-207 | 61.97 | Show/hide |
Query: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
MT++ + +LA++KLNG+NY +WK+ +NT+L+IDDL+FVL EECP P +NA RT R+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+
Subjt: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
Query: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+MMVHFNVAE N AVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+ KG
Subjt: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
Query: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK---------TQQG
Q GEANVA S +K RGS+S KS PS+S + KKK G+G K + + K KA KG CFHCN+ GHWKRNCPKYLAEKK K T +G
Subjt: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK---------TQQG
Query: YRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
++AKE LELVH+DLCGPMNVKARG +EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+N L KTIKT RSDRGGEYMDL+FQ+Y++E GI SQLS
Subjt: YRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
Query: APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK---------------------------------
PG PQQNGVS+RRNRTLLDMVRSMMS+ LP+ FWGYAV+TA YILN VP+KSV +TP +LW GRK
Subjt: APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK---------------------------------
Query: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
GYPK T+GG FYDP++N+VFVSTNATFLEEDH+R H+PRSK+VL+E+SKE T+ +TRVV++ S TRVV +S ++H Q LR PRRSGRV P Y
Subjt: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
Query: LGLAETQVIIPDDGVEDP
+ L ET +I D +EDP
Subjt: LGLAETQVIIPDDGVEDP
|
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| KAA0054309.1 gag/pol protein [Cucumis melo var. makuwa] | 9.1e-189 | 58.41 | Show/hide |
Query: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
MT++ + +LA++KLNG+NY +WK+ +NT+L+IDDL+FVL EECP P +NA RT R+ Y+RW K N+KAR YILAS+S+VLAKKH+ M TA+EIM SL+
Subjt: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
Query: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
MFGQ S+ ++H+A+KYI N RM EG SVREHV++MMVHFNVAE N AVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+ KG
Subjt: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
Query: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK-------------
Q GE NVA S +K RGS+S KS PS+S + KKK G+G K + + K KA KG CFHCN+ GHWKRNCPKYLAEKK K
Subjt: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK-------------
Query: -----------------------------TQQGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLG
T++G+RAKE LELVH+DLCGPMNVKARG +EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+ L
Subjt: -----------------------------TQQGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLG
Query: KTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK
KTIKT RSDRGGEYMDL+FQ+Y++E GI SQLSAPG PQQNGVSERRNRTLLDMVRSMMS+A LP+ FWGYAV+TA YILN VP+KSV ETP +LW GRK
Subjt: KTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK
Query: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
EEDH+R H PRSK+VL+E+SK T+ +TRVV++ S TRVV +S ++H Q LR PRRSGRV P RY
Subjt: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
Query: LGLAETQVIIPDDGVEDP
+ L ET +I D +EDP
Subjt: LGLAETQVIIPDDGVEDP
|
|
| TYK14550.1 gag/pol protein [Cucumis melo var. makuwa] | 6.5e-187 | 47.38 | Show/hide |
Query: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
MT++ + +LA++KLNG+NY +WK+ +NT+L+IDDL+FVL EECP P +NA RT R+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+
Subjt: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
Query: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+MMVHFNVAE N AVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+ KG
Subjt: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
Query: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK-------------
Q GEANVA S +K RGS+S KS PS+S + KKK G+G K + + K KA KG CFHCN+ GHWKRNCPKYLAEKK K
Subjt: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK-------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ---------------------------------------------------------------------------------------------------T
T
Subjt: ---------------------------------------------------------------------------------------------------T
Query: QQGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS
+G+RAKE LELVH+DLCGPMNVKARG +EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+N L KTIKT RSDRGGEYMDL+FQ+Y++E GI S
Subjt: QQGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS
Query: QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK------------------------------
QLSAPG PQQNGVSERRNRTLLDMVRSMMS+A LP+ FWGYAV+TA YILN VP+KSV ETP +LW GRK
Subjt: QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK------------------------------
Query: ---GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQP
GYPK T+GG FYDP++N+VFVSTNATFLEEDH+R H+PRSK+VL+E+SKE T+ +TRVV++ S TRVV +S ++H Q LR PRRSGRV P
Subjt: ---GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQP
Query: DRYLGLAETQVIIPDDGVEDP
RY+ L ET +I D +EDP
Subjt: DRYLGLAETQVIIPDDGVEDP
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SMH8 Gag/pol protein | 3.1e-187 | 47.38 | Show/hide |
Query: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
MT++ + +LA++KLNG+NY +WK+ +NT+L+IDDL+FVL EECP P +NA RT R+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+
Subjt: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
Query: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+MMVHFNVAE N AVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+ KG
Subjt: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
Query: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK-------------
Q GEANVA S +K RGS+S KS PS+S + KKK G+G K + + K KA KG CFHCN+ GHWKRNCPKYLAEKK K
Subjt: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK-------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ---------------------------------------------------------------------------------------------------T
T
Subjt: ---------------------------------------------------------------------------------------------------T
Query: QQGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS
+G+RAKE LELVH+DLCGPMNVKARG +EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+N L KTIKT RSDRGGEYMDL+FQ+Y++E GI S
Subjt: QQGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRS
Query: QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK------------------------------
QLSAPG PQQNGVSERRNRTLLDMVRSMMS+A LP+ FWGYAV+TA YILN VP+KSV ETP +LW GRK
Subjt: QLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK------------------------------
Query: ---GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQP
GYPK T+GG FYDP++N+VFVSTNATFLEEDH+R H+PRSK+VL+E+SKE T+ +TRVV++ S TRVV +S ++H Q LR PRRSGRV P
Subjt: ---GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQP
Query: DRYLGLAETQVIIPDDGVEDP
RY+ L ET +I D +EDP
Subjt: DRYLGLAETQVIIPDDGVEDP
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| A0A5A7SNP8 Gag/pol protein | 5.7e-205 | 61.49 | Show/hide |
Query: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
++++ + +LA++KLNG+NY +WK+ +N +L+IDDL+FVL E+CP P +NA RT R+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+
Subjt: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
Query: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+MMVHFNVA NEAVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+ KG
Subjt: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
Query: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK---------TQQG
Q GEANVA S +K RGS+S KS PS+S + KKK G+G K + + K KA KG CF CN+ GHWKRNCPKYLA+KK K T +G
Subjt: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK---------TQQG
Query: YRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
+RAKE LELVH+DLCGPMNVKARG +EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+N L KTIKT RSDRGGEYMDL+FQ+Y++E GI SQLS
Subjt: YRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
Query: APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK---------------------------------
AP PQQNGVSERRNRTLLDMVRSMMS+A LP+ FWGYAV+TA YILN VP+KSV ETP +LW G K
Subjt: APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK---------------------------------
Query: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
GYPK T+GG FYDP++N+VFVSTNATFLEEDH+R H+PRSK+VL+E+SKE T+ +TRVV++ S RVV +S ++H Q LR PRRSGRV P RY
Subjt: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
Query: LGLAETQVIIPDDGVEDP
+ L ET +I D +EDP
Subjt: LGLAETQVIIPDDGVEDP
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| A0A5A7U869 Gag/pol protein | 5.5e-208 | 61.97 | Show/hide |
Query: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
MT++ + +LA++KLNG+NY +WK+ +NT+L+IDDL+FVL EECP P +NA RT R+ Y+RW KAN+KAR YILAS+S+VLAKKH+ M TA+EIM+SL+
Subjt: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
Query: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
MFGQ S+ ++H+A+KYIYN RM EG SVREHVL+MMVHFNVAE N AVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+ KG
Subjt: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
Query: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK---------TQQG
Q GEANVA S +K RGS+S KS PS+S + KKK G+G K + + K KA KG CFHCN+ GHWKRNCPKYLAEKK K T +G
Subjt: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK---------TQQG
Query: YRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
++AKE LELVH+DLCGPMNVKARG +EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+N L KTIKT RSDRGGEYMDL+FQ+Y++E GI SQLS
Subjt: YRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
Query: APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK---------------------------------
PG PQQNGVS+RRNRTLLDMVRSMMS+ LP+ FWGYAV+TA YILN VP+KSV +TP +LW GRK
Subjt: APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK---------------------------------
Query: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
GYPK T+GG FYDP++N+VFVSTNATFLEEDH+R H+PRSK+VL+E+SKE T+ +TRVV++ S TRVV +S ++H Q LR PRRSGRV P Y
Subjt: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
Query: LGLAETQVIIPDDGVEDP
+ L ET +I D +EDP
Subjt: LGLAETQVIIPDDGVEDP
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| A0A5A7ULH1 Gag/pol protein | 4.4e-189 | 58.41 | Show/hide |
Query: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
MT++ + +LA++KLNG+NY +WK+ +NT+L+IDDL+FVL EECP P +NA RT R+ Y+RW K N+KAR YILAS+S+VLAKKH+ M TA+EIM SL+
Subjt: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
Query: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
MFGQ S+ ++H+A+KYI N RM EG SVREHV++MMVHFNVAE N AVIDE SQVSFI+ SLP+SF QFR+N VMNKI Y LT LLNELQT++SL+ KG
Subjt: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
Query: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK-------------
Q GE NVA S +K RGS+S KS PS+S + KKK G+G K + + K KA KG CFHCN+ GHWKRNCPKYLAEKK K
Subjt: QTGEANVAIS-KKLLRGSSSQNKSGPSTSKSVLMKKK--GKG-KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK-------------
Query: -----------------------------TQQGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLG
T++G+RAKE LELVH+DLCGPMNVKARG +EYFI+F DDYSRYGY+YLM HKSEALEKF+EYK EV+ L
Subjt: -----------------------------TQQGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLG
Query: KTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK
KTIKT RSDRGGEYMDL+FQ+Y++E GI SQLSAPG PQQNGVSERRNRTLLDMVRSMMS+A LP+ FWGYAV+TA YILN VP+KSV ETP +LW GRK
Subjt: KTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK
Query: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
EEDH+R H PRSK+VL+E+SK T+ +TRVV++ S TRVV +S ++H Q LR PRRSGRV P RY
Subjt: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
Query: LGLAETQVIIPDDGVEDP
+ L ET +I D +EDP
Subjt: LGLAETQVIIPDDGVEDP
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| E2GK51 Gag/pol protein (Fragment) | 2.4e-211 | 52.81 | Show/hide |
Query: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
M SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLTEECP P NANRT R+AYDRW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+
Subjt: MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKG
Query: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
MFGQPS+SLRHEAIK+IY RMKEGTSVREHVLDMM+HFN+AE N IDE +QVSFI+ SLPKSF F+TN +NKIE+NLT LLNELQ +Q+L +KG
Subjt: MFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNMVMNKIEYNLTALLNELQTYQSLLTNKG
Query: QTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKGKNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK----------------
+ EANVA++K K +RGSSS+NK GPS ++ MKKKGKG K P K K + ADKGKCFHCN++GHWKRNCPKYLAEKKAEK
Subjt: QTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKGKNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEK----------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ------------------------------------------------------------------------------------------------TQQG
T +G
Subjt: ------------------------------------------------------------------------------------------------TQQG
Query: YRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
RAK LELVH+DLCGPMNVKARG YEYFISFIDD+SRYG++YL+HHKSE+ EKF+EYK EV+N +GKTIKTLRSDRGGEYMD +FQDY+IE GI+SQLS
Subjt: YRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLS
Query: APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK---------------------------------
AP PQQNGVSERRNRTLLDMVRSMMS+AQLPD FWGYA+ETA +ILN VP+KSVLETPYELWKGRK
Subjt: APGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLETPYELWKGRK---------------------------------
Query: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
GYPKE++GGLFY PQEN+VFVSTNATFLEEDH RNHQPRSK+VL E+ K ATDK S ST+VVD A+ S QSH SQELR+PRRSGRV+ QP+RY
Subjt: GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEISKEATDKTTRVVDQASPSTRVVDGADTSGQSHPSQELRMPRRSGRVITQPDRY
Query: LGLAETQVIIPDDGVEDP
LGL ETQ+IIPDDGVEDP
Subjt: LGLAETQVIIPDDGVEDP
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 6.4e-28 | 35.06 | Show/hide |
Query: KETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPG
K L +VH+D+CGP+ YF+ F+D ++ Y YL+ +KS+ F+++ + + + L D G EY+ + + ++ GI L+ P
Subjt: KETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPG
Query: MPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLE---TPYELWKGRKGYPKETK
PQ NGVSER RT+ + R+M+S A+L FWG AV TATY++N +P++++++ TPYE+W +K Y K +
Subjt: MPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSVLE---TPYELWKGRKGYPKETK
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.4e-36 | 31.25 | Show/hide |
Query: RAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSA
R L+LV++D+CGPM +++ G +YF++FIDD SR ++Y++ K + + F+++ V+ G+ +K LRSD GGEY F++Y HGIR + +
Subjt: RAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSA
Query: PGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSV-LETPYELWKGRK---------------------------------
PG PQ NGV+ER NRT+++ VRSM+ A+LP FWG AV+TA Y++N P+ + E P +W ++
Subjt: PGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSV-LETPYELWKGRK---------------------------------
Query: --GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEI-------------SKEATDKTTRVVDQASPSTRVVDGADTSGQ-----SHP
GY E G +DP + +V S + F E VR S+ V + I A T V +Q V++ + + HP
Subjt: --GYPKETKGGLFYDPQENRVFVSTNATFLEEDHVRNHQPRSKLVLSEI-------------SKEATDKTTRVVDQASPSTRVVDGADTSGQ-----SHP
Query: SQ--ELRMP-RRSGRVITQPDRYLGLAETQVIIPDD
+Q E P RRS R + RY + V+I DD
Subjt: SQ--ELRMP-RRSGRVITQPDRYLGLAETQVIIPDD
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| Q12490 Transposon Ty1-BL Gag-Pol polyprotein | 2.1e-15 | 29.07 | Show/hide |
Query: CPKYLAEKKAEKTQ-QGYRAK-----ETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSE--ALEKFREYKTEVQNLLGKTIKTLRSD
CP L K + +G R K E + +HTD+ GP++ + YFISF D+ +++ ++Y +H + E L+ F ++N ++ ++ D
Subjt: CPKYLAEKKAEKTQ-QGYRAK-----ETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSE--ALEKFREYKTEVQNLLGKTIKTLRSD
Query: RGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILN
RG EY + ++ ++GI + + +GV+ER NRTLLD R+ + + LP+ W A+E +T + N
Subjt: RGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILN
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 3.4e-21 | 31.49 | Show/hide |
Query: NCPKYLAEK--KAEKTQQGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEY
+C L K K +Q + LE +++D+ + + Y Y++ F+D ++RY +LY + KS+ E F +K ++N I T SD GGE+
Subjt: NCPKYLAEK--KAEKTQQGYRAKETLELVHTDLCGPMNVKARGVYEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEY
Query: MDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSV-LETPYE
+ L +Y +HGI S P P+ NG+SER++R +++ +++S A +P +W YA A Y++N +PT + LE+P++
Subjt: MDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSMMSFAQLPDPFWGYAVETATYILNMVPTKSV-LETPYE
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 3.1e-22 | 37.96 | Show/hide |
Query: YEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSM
Y Y++ F+D ++RY +LY + KS+ + F +K+ V+N I TL SD GGE++ LR DY+ +HGI S P P+ NG+SER++R +++M ++
Subjt: YEYFISFIDDYSRYGYLYLMHHKSEALEKFREYKTEVQNLLGKTIKTLRSDRGGEYMDLRFQDYMIEHGIRSQLSAPGMPQQNGVSERRNRTLLDMVRSM
Query: MSFAQLPDPFWGYAVETATYILNMVPTKSV-LETPYE
+S A +P +W YA A Y++N +PT + L++P++
Subjt: MSFAQLPDPFWGYAVETATYILNMVPTKSV-LETPYE
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