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CmoCh04G020150 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G020150
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRING-type domain-containing protein
Genome locationCmo_Chr04:10749943..10750652
RNA-Seq ExpressionCmoCh04G020150
SyntenyCmoCh04G020150
Gene Ontology termsNA
InterPro domainsIPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606023.1 Protein neuralized, partial [Cucurbita argyrosperma subsp. sororia]3.0e-2662.61Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA------------WVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP
        MSNLQRMLETCMDM+LELQRSIKQEVSSALNRT+GSE             W    K +C     N  D+      ++   HMCTCSKCANELVE R KCP
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA------------WVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP

Query:  TCHAPILEVIRAYSL
         CHAPILEVIRAYSL
Subjt:  TCHAPILEVIRAYSL

XP_004145822.1 uncharacterized protein LOC101214410 [Cucumis sativus]5.1e-2662.61Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE------------AWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP
        MSNLQRMLETCMDM+LELQRSIKQEVSSALNR AGSE             W    K +C     N  D+      ++   HMCTCSKCANELV+AR KCP
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE------------AWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP

Query:  TCHAPILEVIRAYSL
         CHAPILEVIRAYSL
Subjt:  TCHAPILEVIRAYSL

XP_008465429.1 PREDICTED: uncharacterized protein LOC103503044 isoform X1 [Cucumis melo]5.1e-2662.61Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE------------AWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP
        MSNLQRMLETCMDM+LELQRSIKQEVSSALNR AGSE             W    K +C     N  D+      ++   HMCTCSKCANELV+AR KCP
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE------------AWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP

Query:  TCHAPILEVIRAYSL
         CHAPILEVIRAYSL
Subjt:  TCHAPILEVIRAYSL

XP_008465431.1 PREDICTED: uncharacterized protein LOC103503044 isoform X3 [Cucumis melo]5.1e-2662.61Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE------------AWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP
        MSNLQRMLETCMDM+LELQRSIKQEVSSALNR AGSE             W    K +C     N  D+      ++   HMCTCSKCANELV+AR KCP
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE------------AWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP

Query:  TCHAPILEVIRAYSL
         CHAPILEVIRAYSL
Subjt:  TCHAPILEVIRAYSL

XP_022957802.1 uncharacterized protein LOC111459234 [Cucurbita moschata]3.0e-2662.61Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA------------WVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP
        MSNLQRMLETCMDM+LELQRSIKQEVSSALNRT+GSE             W    K +C     N  D+      ++   HMCTCSKCANELVE R KCP
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA------------WVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP

Query:  TCHAPILEVIRAYSL
         CHAPILEVIRAYSL
Subjt:  TCHAPILEVIRAYSL

TrEMBL top hitse value%identityAlignment
A0A0A0KDG6 RING-type domain-containing protein2.5e-2662.61Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE------------AWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP
        MSNLQRMLETCMDM+LELQRSIKQEVSSALNR AGSE             W    K +C     N  D+      ++   HMCTCSKCANELV+AR KCP
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE------------AWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP

Query:  TCHAPILEVIRAYSL
         CHAPILEVIRAYSL
Subjt:  TCHAPILEVIRAYSL

A0A1S3CQC3 uncharacterized protein LOC103503044 isoform X32.5e-2662.61Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE------------AWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP
        MSNLQRMLETCMDM+LELQRSIKQEVSSALNR AGSE             W    K +C     N  D+      ++   HMCTCSKCANELV+AR KCP
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE------------AWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP

Query:  TCHAPILEVIRAYSL
         CHAPILEVIRAYSL
Subjt:  TCHAPILEVIRAYSL

A0A5A7T582 Ring/U-Box superfamily protein, putative isoform 12.5e-2662.61Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE------------AWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP
        MSNLQRMLETCMDM+LELQRSIKQEVSSALNR AGSE             W    K +C     N  D+      ++   HMCTCSKCANELV+AR KCP
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE------------AWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP

Query:  TCHAPILEVIRAYSL
         CHAPILEVIRAYSL
Subjt:  TCHAPILEVIRAYSL

A0A5D3DKX2 Ring/U-Box superfamily protein, putative isoform 12.5e-2662.61Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE------------AWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP
        MSNLQRMLETCMDM+LELQRSIKQEVSSALNR AGSE             W    K +C     N  D+      ++   HMCTCSKCANELV+AR KCP
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE------------AWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP

Query:  TCHAPILEVIRAYSL
         CHAPILEVIRAYSL
Subjt:  TCHAPILEVIRAYSL

A0A6J1H1A5 uncharacterized protein LOC1114592341.5e-2662.61Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA------------WVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP
        MSNLQRMLETCMDM+LELQRSIKQEVSSALNRT+GSE             W    K +C     N  D+      ++   HMCTCSKCANELVE R KCP
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA------------WVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCP

Query:  TCHAPILEVIRAYSL
         CHAPILEVIRAYSL
Subjt:  TCHAPILEVIRAYSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G27950.1 Ring/U-Box superfamily protein5.9e-2048.25Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNR----------TAGSEA-WVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPT
        M NLQRMLE CM+M+LELQRSI+QEVS+A++R          TA  E+ W    K +C     +  DS      ++   HM TC KCA +LVEA  KCP 
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNR----------TAGSEA-WVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPT

Query:  CHAPILEVIRAYSL
        C AP++EV+RAYS+
Subjt:  CHAPILEVIRAYSL

AT2G34920.1 RING/U-box superfamily protein6.1e-0936.63Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEAWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRA
        MS L+  ++TC+D+   LQ+S+  E  +   R             VC     NET  +   T ++   HMCTC +CANEL     KCP CHA IL+V+R 
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEAWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRA

Query:  Y
        +
Subjt:  Y

AT5G04460.1 RING/U-box superfamily protein3.0e-2451.75Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA-----------WVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPT
        MS +QRMLE CMDM+LELQRS++QEVS+ALNR+AG +            W    K  C     N  D+      ++   HMCTCSKCANELV    KCP 
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA-----------WVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPT

Query:  CHAPILEVIRAYSL
        C API+EVIRAYS+
Subjt:  CHAPILEVIRAYSL

AT5G04460.2 RING/U-box superfamily protein1.4e-0872.97Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE
        MS +QRMLE CMDM+LELQRS++QEVS+ALNR+AG +
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSE

AT5G04460.3 RING/U-box superfamily protein3.0e-2451.75Show/hide
Query:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA-----------WVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPT
        MS +QRMLE CMDM+LELQRS++QEVS+ALNR+AG +            W    K  C     N  D+      ++   HMCTCSKCANELV    KCP 
Subjt:  MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEA-----------WVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPT

Query:  CHAPILEVIRAYSL
        C API+EVIRAYS+
Subjt:  CHAPILEVIRAYSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAACCTACAGAGAATGTTGGAGACATGCATGGACATGCGACTTGAGCTGCAGCGCTCAATTAAGCAAGAAGTTTCTTCTGCACTGAACCGAACAGCTGGTTCAGA
AGCATGGGTGGAGGGAGGGAAGACAGTTTGCCAGACGAAGAACCCAAATGAGACCGATTCCAAGTTTCATTTAACTTATATTTTCTCCTTTTGGCACATGTGCACATGTT
CAAAATGTGCTAACGAGTTGGTCGAAGCAAGAGAAAAGTGTCCGACATGTCATGCGCCTATTCTAGAAGTGATTCGTGCTTACTCTTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAACCTACAGAGAATGTTGGAGACATGCATGGACATGCGACTTGAGCTGCAGCGCTCAATTAAGCAAGAAGTTTCTTCTGCACTGAACCGAACAGCTGGTTCAGA
AGCATGGGTGGAGGGAGGGAAGACAGTTTGCCAGACGAAGAACCCAAATGAGACCGATTCCAAGTTTCATTTAACTTATATTTTCTCCTTTTGGCACATGTGCACATGTT
CAAAATGTGCTAACGAGTTGGTCGAAGCAAGAGAAAAGTGTCCGACATGTCATGCGCCTATTCTAGAAGTGATTCGTGCTTACTCTTTATGA
Protein sequenceShow/hide protein sequence
MSNLQRMLETCMDMRLELQRSIKQEVSSALNRTAGSEAWVEGGKTVCQTKNPNETDSKFHLTYIFSFWHMCTCSKCANELVEAREKCPTCHAPILEVIRAYSL