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CmoCh04G020560 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G020560
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionsplicing factor U2AF-associated protein 2
Genome locationCmo_Chr04:11499777..11503872
RNA-Seq ExpressionCmoCh04G020560
SyntenyCmoCh04G020560
Gene Ontology termsGO:0000184 - nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (biological process)
GO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0009910 - negative regulation of flower development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601707.1 HIV Tat-specific factor 1-like protein, partial [Cucurbita argyrosperma subsp. sororia]5.5e-1287.5Show/hide
Query:  LSVNDLHRFGGRQIHASEED-----GLVRDLEADAARLEQFGSEIEAH
        LSVNDLHRFGGRQIHASEED     GLVRDLEADAARLEQFGSE+EAH
Subjt:  LSVNDLHRFGGRQIHASEED-----GLVRDLEADAARLEQFGSEIEAH

XP_008442163.1 PREDICTED: splicing factor U2AF-associated protein 2 [Cucumis melo]1.2e-0662.96Show/hide
Query:  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA
        R D ++ + + +   FGGRQIHASE+DGL     VRDLEADAARLEQFGSE+EA
Subjt:  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA

XP_022158647.1 splicing factor U2AF-associated protein 2 [Momordica charantia]1.2e-0662.96Show/hide
Query:  RMDCKETLSVNDLHRFGGRQIHASEEDG-----LVRDLEADAARLEQFGSEIEA
        R D ++ + + +   FGGRQIHASE+DG     LVRDLEADAARLEQFGSE+EA
Subjt:  RMDCKETLSVNDLHRFGGRQIHASEEDG-----LVRDLEADAARLEQFGSEIEA

XP_038882573.1 splicing factor U2AF-associated protein 2 isoform X1 [Benincasa hispida]1.2e-0662.96Show/hide
Query:  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA
        R D ++ + + +   FGGRQIHASE+DGL     VRDLEADAARLEQFGSE+EA
Subjt:  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA

XP_038882575.1 splicing factor U2AF-associated protein 2 isoform X3 [Benincasa hispida]1.2e-0662.96Show/hide
Query:  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA
        R D ++ + + +   FGGRQIHASE+DGL     VRDLEADAARLEQFGSE+EA
Subjt:  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA

TrEMBL top hitse value%identityAlignment
A0A0A0KZ32 Uncharacterized protein1.3e-0661.11Show/hide
Query:  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA
        R D ++ + + +   FGG+QIHASE+DGL     VRDLEADAARLEQFGSE+EA
Subjt:  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA

A0A1S3B523 splicing factor U2AF-associated protein 25.8e-0762.96Show/hide
Query:  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA
        R D ++ + + +   FGGRQIHASE+DGL     VRDLEADAARLEQFGSE+EA
Subjt:  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA

A0A5A7TGW0 Splicing factor U2AF-associated protein 25.8e-0762.96Show/hide
Query:  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA
        R D ++ + + +   FGGRQIHASE+DGL     VRDLEADAARLEQFGSE+EA
Subjt:  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA

A0A5D3BUE8 Splicing factor U2AF-associated protein 25.8e-0762.96Show/hide
Query:  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA
        R D ++ + + +   FGGRQIHASE+DGL     VRDLEADAARLEQFGSE+EA
Subjt:  RMDCKETLSVNDLHRFGGRQIHASEEDGL-----VRDLEADAARLEQFGSEIEA

A0A6J1DXR6 splicing factor U2AF-associated protein 25.8e-0762.96Show/hide
Query:  RMDCKETLSVNDLHRFGGRQIHASEEDG-----LVRDLEADAARLEQFGSEIEA
        R D ++ + + +   FGGRQIHASE+DG     LVRDLEADAARLEQFGSE+EA
Subjt:  RMDCKETLSVNDLHRFGGRQIHASEEDG-----LVRDLEADAARLEQFGSEIEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATCCTGGAAAGTTCAAAACATGTCAGCTCAAAAGAACAAAGCTTTGAAATTAGAATTTATGAGTCTGAATCAAACCATTAAGCGTATGGATTGCAAGGAGACTCT
TAGTGTTAATGATTTGCACAGGTTTGGTGGAAGACAAATTCATGCAAGCGAGGAGGATGGTTTGGTGAGGGATCTTGAAGCCGATGCTGCTCGTTTGGAGCAGTTTGGCT
CTGAAATTGAGGCTCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGATCCTGGAAAGTTCAAAACATGTCAGCTCAAAAGAACAAAGCTTTGAAATTAGAATTTATGAGTCTGAATCAAACCATTAAGCGTATGGATTGCAAGGAGACTCT
TAGTGTTAATGATTTGCACAGGTTTGGTGGAAGACAAATTCATGCAAGCGAGGAGGATGGTTTGGTGAGGGATCTTGAAGCCGATGCTGCTCGTTTGGAGCAGTTTGGCT
CTGAAATTGAGGCTCACTAA
Protein sequenceShow/hide protein sequence
MRSWKVQNMSAQKNKALKLEFMSLNQTIKRMDCKETLSVNDLHRFGGRQIHASEEDGLVRDLEADAARLEQFGSEIEAH