CuGenDBv2

Gene ID	CmoCh04G020670
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein S3
Genome location	Cmo_Chr04:11796823..11800077
RNA-Seq Expression	CmoCh04G020670
Synteny	CmoCh04G020670
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR044954 - Ribosomal protein S3, mitochondrial, plant

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ABO31946.1 ribosomal protein S3, partial [Itea virginica]

7.9e-57

69.71

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Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH
        CIILHFPK TFIHFFLP RPR L+RR KS+P K++GRWWAFGKVGPIGCLHSSD TEEER +VR W A KRVES I+LDDREKQNEIRIW KKKQ Y +H
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH

Query:  DRSPSRKKNLSKSL--HRGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP
        DRSPS+KKNLSKSL      +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S         LK   P   P
Subjt:  DRSPSRKKNLSKSL--HRGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP

ADL63821.1 ribosomal protein S3, partial [Cucurbita pepo]

1.9e-66

77.71

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Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH
        CIILHFPKITFIHFFLP RPRGL+RRAKSKP KDQGRWWAFGKVGPIGCLHSSDDTEEERNKVR  EAEKRVESMI+LDDREKQNEIRIW KKKQDY +H
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH

Query:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP
        DRSPSRKKNLSKSL      +  +YA  VN IAFLIENDDSFRK +LFKFFFPNQS         LK   P   P
Subjt:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP

ADL63990.1 ribosomal protein S3, partial [Schinus molle]

7.9e-57

74.36

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Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH
        CIILHFPK TFIHFFLP RPR L+RR K++P K++GRWW FGKVGPIGCLHSSDDTEEERN+V+ W A KRVES I+LDDREKQNEIRIW KKKQ Y +H
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH

Query:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS
        DR PS+KKNLSKSL      +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S
Subjt:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS

YP_003587231.1 ribosomal protein S3 [Citrullus lanatus]

1.6e-57

71.43

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Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH
        CIILHFPK TFIHFFLP RPR L+RR KSKP K++GRWWAFGKVGPIGCLHSSDDTEEERN+VR  EAEKRVES I+LDDREKQNEIRIW KKKQ Y +H
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH

Query:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP
        DRSPS KKNLSK L      +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S         LK   P   P
Subjt:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP

YP_003587365.1 ribosomal protein S3 [Cucurbita pepo]

9.3e-66

77.14

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Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH
        CIILHFPKITFIHFFLP RPRGL+RRAKSKP KDQGRWWAFGKVGPIGCLHSSDDTEEERNKVR  EAEKRVESMI+LDDREKQNEIRIW KKKQDY +H
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH

Query:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP
        DRSPSRKKNLSK L      +  +YA  VN IAFLIENDDSFRK +LFKFFFPNQS         LK   P   P
Subjt:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP

TrEMBL top hits

e value

%identity

Alignment

B0L4P6 Ribosomal protein S3 (Fragment)

3.8e-57

69.71

Show/hide

Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH
        CIILHFPK TFIHFFLP RPR L+RR KS+P K++GRWWAFGKVGPIGCLHSSD TEEER +VR W A KRVES I+LDDREKQNEIRIW KKKQ Y +H
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH

Query:  DRSPSRKKNLSKSL--HRGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP
        DRSPS+KKNLSKSL      +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S         LK   P   P
Subjt:  DRSPSRKKNLSKSL--HRGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP

D5I3A1 Ribosomal protein S3

7.7e-58

71.43

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Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH
        CIILHFPK TFIHFFLP RPR L+RR KSKP K++GRWWAFGKVGPIGCLHSSDDTEEERN+VR  EAEKRVES I+LDDREKQNEIRIW KKKQ Y +H
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH

Query:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP
        DRSPS KKNLSK L      +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S         LK   P   P
Subjt:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP

D5I3F1 Ribosomal protein S3

4.5e-66

77.14

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Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH
        CIILHFPKITFIHFFLP RPRGL+RRAKSKP KDQGRWWAFGKVGPIGCLHSSDDTEEERNKVR  EAEKRVESMI+LDDREKQNEIRIW KKKQDY +H
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH

Query:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP
        DRSPSRKKNLSK L      +  +YA  VN IAFLIENDDSFRK +LFKFFFPNQS         LK   P   P
Subjt:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP

E5DM03 Ribosomal protein S3 (Fragment)

9.1e-67

77.71

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Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH
        CIILHFPKITFIHFFLP RPRGL+RRAKSKP KDQGRWWAFGKVGPIGCLHSSDDTEEERNKVR  EAEKRVESMI+LDDREKQNEIRIW KKKQDY +H
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH

Query:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP
        DRSPSRKKNLSKSL      +  +YA  VN IAFLIENDDSFRK +LFKFFFPNQS         LK   P   P
Subjt:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP

E5DMH2 Ribosomal protein S3 (Fragment)

3.8e-57

74.36

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Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH
        CIILHFPK TFIHFFLP RPR L+RR K++P K++GRWW FGKVGPIGCLHSSDDTEEERN+V+ W A KRVES I+LDDREKQNEIRIW KKKQ Y +H
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH

Query:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS
        DR PS+KKNLSKSL      +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S
Subjt:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS

SwissProt top hits

e value

%identity

Alignment

P27754 Ribosomal protein S3, mitochondrial

9.0e-56

66.86

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Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH
        CIILHFPK TFIHFFLP RPR L+R  KS+P K++ RWW FGKVGPIGCLHS+DDTEEERN+V    A KRVES I+LDDREKQNEIRIW KKKQ Y +H
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH

Query:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP
        DRSPS KKNLSKSL      +  +YA  +N IAFLIENDDSFRK KLFKFFFP +S         LK   P   P
Subjt:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP

P27928 Ribosomal protein S3, mitochondrial

2.1e-52

65.34

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Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH
        CIILHFPK TFIHFFLP RP  L+RR KS+P KD+GRWWAFGKVGPIGCLHSS+ TEEERN+VR   A KRVES+    DREKQNEIRIW KK Q Y +H
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH

Query:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFF-PNQSPPTARRVIYLKEPSPQCAP
        DR+PSRKKN SKSL      +  +YA  VN IAFLIENDDSF K KLFKFFF P +S         LK   P   P
Subjt:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFF-PNQSPPTARRVIYLKEPSPQCAP

P49386 Ribosomal protein S3, mitochondrial

9.7e-50

68.15

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Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAF-GKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEF
        CI+LHFPK TFIHFFLP RPR L+RR K++P K++GRWW   GK GPIGCL   DDTEEERN+VR   A KRVES I+LDDR+KQNEIR W KKKQ Y +
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAF-GKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEF

Query:  HDRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS
        HDR+PS KKNLSKSL      +  +Y   VN IAFLIENDDSFRK KLFKFFFP +S
Subjt:  HDRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS

Q04716 Ribosomal protein S3, mitochondrial

2.0e-55

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Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH
        CIILHFPK TFIHFFLP RPR L+RR KS+P K++GRW AFGKVGPIGCLHSSD TEEERN+VR   A KRVES I+LDDREKQNEIRIW KKKQ Y +H
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFH

Query:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP
        DRSPS KKNLSKSL      +  +YA   N IAFLIENDDSFRK  LFKFFFP +S         LK   P   P
Subjt:  DRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP

Q95749 Ribosomal protein S3, mitochondrial

1.4e-51

69.43

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Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWW-AFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEF
        CIILHFPK TFIHFFLP RPR L+RR K++P K++GRWW  FGK GPI CLHSSDDTEEERN+VR   A KRVES I+LDDR+KQNEIR W KKKQ Y +
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWW-AFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEF

Query:  HDRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS
        HDR PS KKNLSK L      +  +YA  VN IAFLIENDDSF+K KLFK FF N+S
Subjt:  HDRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS

Arabidopsis top hits

e value

%identity

Alignment

ATMG00090.1 structural constituent of ribosome;protein binding

1.9e-53

70.06

Show/hide

Query:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWW-AFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEF
        CIILHFPK TFIHFFLP RPR L+RR K++P K++GRWW  FGK GPI CLHSSDDTEEERN+VR   A KRVES I+LDDR+KQNEIR W KKKQ Y +
Subjt:  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWW-AFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEF

Query:  HDRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS
        HDR PS KKNLSKSL      +  +YA  VN IAFLIENDDSF+K KLFK FF N+S
Subjt:  HDRSPSRKKNLSKSLH--RGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAAAACTTCTGTTCGTTGTAAGATCATTGAAGGAAGGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCTCATCGACCACGAGGACT
GGAACGACGCGCAAAATCCAAACCCGAAAAGGATCAGGGCCGGTGGTGGGCATTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAAC
GAAACAAAGTGAGAGCCTGGGAGGCAGAGAAAAGAGTGGAGTCGATGATCAAGCTCGACGACCGGGAAAAGCAAAATGAAATTAGGATTTGGCTGAAAAAGAAGCAAGAC
TATGAATTCCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCATCGGGGCCTTCAAGCATCCGAATATGCTGAAGCTGTAAATTACATAGCGTTCCT
GATCGAAAATGATGACTCCTTCAGAAAAATGAAGTTATTCAAGTTCTTTTTCCCAAATCAGTCCCCTCCGACGGCCCGGCGAGTCATCTACTTAAAAGAACCCTCCCCGC
AGTGCGCCCCTCCATGA

mRNA sequence

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Protein sequence

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MEKLLFVVRSLKEGCIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEERNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQD
YEFHDRSPSRKKNLSKSLHRGLQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAPP

CmoCh04G020670 (gene) of Cucurbita moschata (Rifu) v1 genome