CuGenDBv2

Gene ID	CmoCh04G020690
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
Genome location	Cmo_Chr04:11817979..11819490
RNA-Seq Expression	CmoCh04G020690
Synteny	CmoCh04G020690
Gene Ontology terms	GO:0042773 - ATP synthesis coupled electron transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0048038 - quinone binding (molecular function)
InterPro domains	IPR002128 - NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

ALO21756.1 NdhF [Cucurbita argyrosperma]

5.8e-18

73.24

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF
        MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+        VL+ FT F
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF

ALO21856.1 NdhF [Cucurbita argyrosperma subsp. sororia]

5.8e-18

73.24

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF
        MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+        VL+ FT F
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF

ALO22082.1 NdhF [Cucurbita ecuadorensis]

5.8e-18

73.24

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF
        MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+        VL+ FT F
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF

YP_009447498.1 NADH dehydrogenase subunit 5 [Cucurbita maxima]

5.8e-18

73.24

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF
        MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+        VL+ FT F
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF

YP_009447583.1 NADH dehydrogenase subunit 5 [Cucurbita moschata]

5.8e-18

73.24

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF
        MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+        VL+ FT F
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF

TrEMBL top hits

e value

%identity

Alignment

A0A0S2IE76 NAD(P)H dehydrogenase subunit 5

2.8e-18

73.24

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF
        MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+        VL+ FT F
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF

A0A0S2IG09 NAD(P)H dehydrogenase subunit 5

2.8e-18

73.24

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF
        MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+        VL+ FT F
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF

A0A0S2IGR2 NAD(P)H dehydrogenase subunit 5

2.8e-18

73.24

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF
        MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+        VL+ FT F
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF

A0A0S2IGT3 NAD(P)H dehydrogenase subunit 5

2.8e-18

73.24

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF
        MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+        VL+ FT F
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF

A0A2H4T227 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

2.8e-18

73.24

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF
        MNNNQRSS LGKKTAYQMDSN+TKMMRPFV IP+FCT+TTF+YPYE DNTMLFP+        VL+ FT F
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF

SwissProt top hits

e value

%identity

Alignment

P51095 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

4.3e-08

49.15

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLI
        M  N R+S    K  Y++D NL  +++PF+ IP+F T  T++YPYE DNTMLFPI+ L+
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLI

Q2QD43 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

8.4e-12

54.93

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF
        MNN +RSS   KKT Y  +SN+TK MRPFV  P+F T+ TF YPYE +NTMLFP+        VL+ FT F
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSF

Q32539 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

2.5e-08

47.46

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLI
        M  N R S       Y++D N+  M++PF+ IP+F    T++YPYE DNTMLFPI+ LI
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLI

Q49KV1 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

2.5e-08

50.85

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLI
        MNNN+R+S    KT YQ+D N    +RPF+ I  F T+ TF+YP+E DNTMLF ++ L+
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLI

Q68RV9 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic

3.0e-09

52.54

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Query:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLI
        MNN++ +S   KKT YQMD N+  + +PF+ I YF  +  F+YPYE DNTMLFPI+ L+
Subjt:  MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLI

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAATAATAACCAAAGGTCTTCTTCTTTGGGAAAAAAAACAGCATATCAAATGGACAGTAATCTAACAAAAATGATGCGTCCTTTTGTGAGAATTCCCTATTTTTGTAC
TCAGACTACTTTTGCGTATCCTTATGAAGTAGATAATACGATGCTATTTCCGATAATATCCTTAATTGGGGGCATAAGAGTATTAGCTGAATTCACTTCTTTTTTTTTAT
GGGGAATGGATGGAATTACCAATGCTAGGGGTATTCTGAATTTGTTTATCGCAGAAATTACATCCGAGCAGAGGTTAAGAAGTTTCATAAACAGTCAATCTGTCTCATTC
ATCTTCCGTTTCATCGATTTTGTCCGAATCTTCATTTTCTTCCGAAACAAAGGGAAGGAGAAGTATCTTCTTCGAAGAAATGAAACAAAAGACACGGTAGAGCTAGGACA
GTTATTGTATGAGGTTTATCCAATGCTAGATGCAGAAAGACAGAGGCGCATAATAGATCGATATGAACTGAGCTGTCCCATAATCAAACCTATTGTTACTGATACTTTCT
TCTCGGTTCCTTCTTCCATAACCCGAGCTCGGAGAAGGAAGAGATAA

mRNA sequence

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Protein sequence

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MNNNQRSSSLGKKTAYQMDSNLTKMMRPFVRIPYFCTQTTFAYPYEVDNTMLFPIISLIGGIRVLAEFTSFFLWGMDGITNARGILNLFIAEITSEQRLRSFINSQSVSF
IFRFIDFVRIFIFFRNKGKEKYLLRRNETKDTVELGQLLYEVYPMLDAERQRRIIDRYELSCPIIKPIVTDTFFSVPSSITRARRRKR

CmoCh04G020690 (gene) of Cucurbita moschata (Rifu) v1 genome