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CmoCh04G020830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G020830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L2, chloroplastic
Genome locationCmo_Chr04:12069842..12082686
RNA-Seq ExpressionCmoCh04G020830
SyntenyCmoCh04G020830
Gene Ontology termsGO:0005622 - intracellular (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69974.1 hypothetical protein Prudu_1306S000300, partial [Prunus dulcis]1.6e-0936Show/hide
Query:  SLATYSGTGTQDSRLNLLDSSSYLLIPEPEGKTLDSFSQPTNELT--------------LASQGIEGEGGHKRLYRQIYFRGNERSMVESLW--------
        +L TY    +    ++L  +S+    P      +DS S P N L               + + G  G GGHKRLYR+I FR NE+ +   +         
Subjt:  SLATYSGTGTQDSRLNLLDSSSYLLIPEPEGKTLDSFSQPTNELT--------------LASQGIEGEGGHKRLYRQIYFRGNERSMVESLW--------

Query:  -----------GEKRSIL-PEGLSGLYLIGDTIVSGPE-------------ISSATSRKAYALEEACTVWEGGVV
                   GEKR IL P G     +IGDTIVSG E             ISS+TSRK YALEEACTVWEG ++
Subjt:  -----------GEKRSIL-PEGLSGLYLIGDTIVSGPE-------------ISSATSRKAYALEEACTVWEGGVV

CAB4299879.1 unnamed protein product [Prunus armeniaca]3.6e-0938.93Show/hide
Query:  PEPEGKTLDSFSQPTNELT--------------LASQGIEGEGGHKRLYRQIYFRGNERSMVESLW-------------------GEKRSIL-PEGLSGL
        P      +DS S P N L               + + G  G GGHKRLYR+I FR NE+ +   +                    GEKR IL P G    
Subjt:  PEPEGKTLDSFSQPTNELT--------------LASQGIEGEGGHKRLYRQIYFRGNERSMVESLW-------------------GEKRSIL-PEGLSGL

Query:  YLIGDTIVSGPE-------------ISSATSRKAYALEEACTVWEGGVV
         +IGDTIVSG E             ISS+TSRK YALEEACTVWEG ++
Subjt:  YLIGDTIVSGPE-------------ISSATSRKAYALEEACTVWEGGVV

YP_009176044.1 ribosomal protein L2 [Ficus racemosa]4.7e-0946.3Show/hide
Query:  GGHKRLYRQIYFRGNERSMVESL-------------------WGEKRSIL-PEGLSGLYLIGDTIVSGPE--------------ISSATSRKAYALEEAC
        GGHKRLYR+I FR NE+ +   +                    GEKR IL P G     LIGDTIVSG E              ISS+TSRK YALEEAC
Subjt:  GGHKRLYRQIYFRGNERSMVESL-------------------WGEKRSIL-PEGLSGLYLIGDTIVSGPE--------------ISSATSRKAYALEEAC

Query:  TVWEGGVV
        TVWEG ++
Subjt:  TVWEGGVV

YP_009354072.1 ribosomal protein L2 [Rehmannia henryi]4.3e-1051.58Show/hide
Query:  GGHKRLYRQIYFRGNERSMVESLW-------------------GEKRSIL-PEGLSGLYLIGDTIVSGPE-ISSATSRKAYALEEACTVWEGGVV
        GGHKRLYR+I FR NE+ +   +                    GEKR IL P G     +IGDTIVSG E ISS+TSRK YALEEACTVWEG ++
Subjt:  GGHKRLYRQIYFRGNERSMVESLW-------------------GEKRSIL-PEGLSGLYLIGDTIVSGPE-ISSATSRKAYALEEACTVWEGGVV

YP_009924498.1 ribosomal protein L2 [Styrax faberi]4.7e-0945.37Show/hide
Query:  GGHKRLYRQIYFRGNERSMVESLW-------------------GEKRSIL-PEGLSGLYLIGDTIVSGPE--------------ISSATSRKAYALEEAC
        GGHKRLYR+I FR NE+++   +                    GEKR IL P G+    +IGDTIVSG E              ISS+TSRK YALEEAC
Subjt:  GGHKRLYRQIYFRGNERSMVESLW-------------------GEKRSIL-PEGLSGLYLIGDTIVSGPE--------------ISSATSRKAYALEEAC

Query:  TVWEGGVV
        TVWEG ++
Subjt:  TVWEGGVV

TrEMBL top hitse value%identityAlignment
A0A0N9YKK9 50S ribosomal protein L2, chloroplastic2.3e-0946.3Show/hide
Query:  GGHKRLYRQIYFRGNERSMVESL-------------------WGEKRSIL-PEGLSGLYLIGDTIVSGPE--------------ISSATSRKAYALEEAC
        GGHKRLYR+I FR NE+ +   +                    GEKR IL P G     LIGDTIVSG E              ISS+TSRK YALEEAC
Subjt:  GGHKRLYRQIYFRGNERSMVESL-------------------WGEKRSIL-PEGLSGLYLIGDTIVSGPE--------------ISSATSRKAYALEEAC

Query:  TVWEGGVV
        TVWEG ++
Subjt:  TVWEGGVV

A0A1U9YED0 Ribosomal protein L22.1e-1051.58Show/hide
Query:  GGHKRLYRQIYFRGNERSMVESLW-------------------GEKRSIL-PEGLSGLYLIGDTIVSGPE-ISSATSRKAYALEEACTVWEGGVV
        GGHKRLYR+I FR NE+ +   +                    GEKR IL P G     +IGDTIVSG E ISS+TSRK YALEEACTVWEG ++
Subjt:  GGHKRLYRQIYFRGNERSMVESLW-------------------GEKRSIL-PEGLSGLYLIGDTIVSGPE-ISSATSRKAYALEEACTVWEGGVV

A0A4Y1RG22 PREDICTED: ribosomal L21.8e-0938.93Show/hide
Query:  PEPEGKTLDSFSQPTNELT--------------LASQGIEGEGGHKRLYRQIYFRGNERSMVESLW-------------------GEKRSIL-PEGLSGL
        P      +DS S P N L               + + G  G GGHKRLYR+I FR NE+ +   +                    GEKR IL P G    
Subjt:  PEPEGKTLDSFSQPTNELT--------------LASQGIEGEGGHKRLYRQIYFRGNERSMVESLW-------------------GEKRSIL-PEGLSGL

Query:  YLIGDTIVSGPE-------------ISSATSRKAYALEEACTVWEGGVV
         +IGDTIVSG E             ISS+TSRK YALEEACTVWEG ++
Subjt:  YLIGDTIVSGPE-------------ISSATSRKAYALEEACTVWEGGVV

A0A5H2XTF6 Ribosomal_L2_C domain-containing protein (Fragment)7.9e-1036Show/hide
Query:  SLATYSGTGTQDSRLNLLDSSSYLLIPEPEGKTLDSFSQPTNELT--------------LASQGIEGEGGHKRLYRQIYFRGNERSMVESLW--------
        +L TY    +    ++L  +S+    P      +DS S P N L               + + G  G GGHKRLYR+I FR NE+ +   +         
Subjt:  SLATYSGTGTQDSRLNLLDSSSYLLIPEPEGKTLDSFSQPTNELT--------------LASQGIEGEGGHKRLYRQIYFRGNERSMVESLW--------

Query:  -----------GEKRSIL-PEGLSGLYLIGDTIVSGPE-------------ISSATSRKAYALEEACTVWEGGVV
                   GEKR IL P G     +IGDTIVSG E             ISS+TSRK YALEEACTVWEG ++
Subjt:  -----------GEKRSIL-PEGLSGLYLIGDTIVSGPE-------------ISSATSRKAYALEEACTVWEGGVV

A0A6J5WEB6 Ribosomal_L2_C domain-containing protein1.8e-0938.93Show/hide
Query:  PEPEGKTLDSFSQPTNELT--------------LASQGIEGEGGHKRLYRQIYFRGNERSMVESLW-------------------GEKRSIL-PEGLSGL
        P      +DS S P N L               + + G  G GGHKRLYR+I FR NE+ +   +                    GEKR IL P G    
Subjt:  PEPEGKTLDSFSQPTNELT--------------LASQGIEGEGGHKRLYRQIYFRGNERSMVESLW-------------------GEKRSIL-PEGLSGL

Query:  YLIGDTIVSGPE-------------ISSATSRKAYALEEACTVWEGGVV
         +IGDTIVSG E             ISS+TSRK YALEEACTVWEG ++
Subjt:  YLIGDTIVSGPE-------------ISSATSRKAYALEEACTVWEGGVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAGATGGAACTATAAAGACTGAAGCAAGACAAGATGCATTAGAGTTTACGGTCAGTCTCGCTACTTACTCCGGAACCGGAACTCAAGACTCAAGACTCAACCTTCTTGA
CTCCTCTTCCTACTTACTTATTCCTGAACCAGAAGGAAAGACTCTCGATTCATTCTCACAGCCAACTAATGAATTGACACTCGCCAGTCAAGGCATAGAGGGGGAGGGAG
GTCATAAGCGTCTATACCGTCAAATCTATTTTCGAGGGAATGAAAGATCTATGGTCGAATCACTATGGGGTGAGAAAAGATCTATTTTACCAGAGGGGCTGTCTGGGCTC
TATCTAATTGGAGATACCATTGTTTCTGGTCCAGAAATATCATCAGCTACATCCAGAAAGGCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGAGGGGTGGTTTG
A
mRNA sequenceShow/hide mRNA sequence
ATAGATGGAACTATAAAGACTGAAGCAAGACAAGATGCATTAGAGTTTACGGTCAGTCTCGCTACTTACTCCGGAACCGGAACTCAAGACTCAAGACTCAACCTTCTTGA
CTCCTCTTCCTACTTACTTATTCCTGAACCAGAAGGAAAGACTCTCGATTCATTCTCACAGCCAACTAATGAATTGACACTCGCCAGTCAAGGCATAGAGGGGGAGGGAG
GTCATAAGCGTCTATACCGTCAAATCTATTTTCGAGGGAATGAAAGATCTATGGTCGAATCACTATGGGGTGAGAAAAGATCTATTTTACCAGAGGGGCTGTCTGGGCTC
TATCTAATTGGAGATACCATTGTTTCTGGTCCAGAAATATCATCAGCTACATCCAGAAAGGCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGAGGGGTGGTTTG
A
Protein sequenceShow/hide protein sequence
IDGTIKTEARQDALEFTVSLATYSGTGTQDSRLNLLDSSSYLLIPEPEGKTLDSFSQPTNELTLASQGIEGEGGHKRLYRQIYFRGNERSMVESLWGEKRSILPEGLSGL
YLIGDTIVSGPEISSATSRKAYALEEACTVWEGGVV