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CmoCh04G020970 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G020970
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionReverse transcriptase
Genome locationCmo_Chr04:13114417..13115004
RNA-Seq ExpressionCmoCh04G020970
SyntenyCmoCh04G020970
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022972955.1 uncharacterized protein LOC111471475 [Cucurbita maxima]1.7e-8387.43Show/hide
Query:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV
        MG LKFLSALQRKV PKEIIEKGL+FVDATINS+ SKSTLIDSGATHNFI DQEARRLGLTIGKD GKMK VN EALPIVGVSKRVPFK+G W GELDLV
Subjt:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV

Query:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV
        +VRMD  DV+LG EFLLEHKVIPMPL KCLVITDRNPTVIP SIKQPGNLRMISAI LKR LAREEPTFMAIPLMEE TTEET P+EIKEV
Subjt:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV

XP_022975706.1 uncharacterized protein LOC111475733, partial [Cucurbita maxima]3.8e-8686.39Show/hide
Query:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV
        MG LKFLSALQRKV PKEI+EKGL+FVDATIN QP++STLIDSGATHNFI DQEARRLGLTIG+DPGKMKA+N EALPIVGVSKRVPFK+G W GELDLV
Subjt:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV

Query:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV
        + RMDDFDVVLG EFLLEHKVIPMPL KCLVITDRNPTVIPASIKQPGNLRMISAI+LKR LAREEPTF+AIPLME  TTEET P+EI EV
Subjt:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV

XP_023524533.1 uncharacterized protein LOC111788429 [Cucurbita pepo subsp. pepo]1.2e-8789.53Show/hide
Query:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV
        MG LKFLSALQRKV PKEIIEKGL+FVDATINS+ SKSTLIDSGATHNFI DQEARRLGLTIGKDPGKMKAVN EALPIVGVSK VPFK+G W GELDLV
Subjt:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV

Query:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV
        +VRMDDFDVVLG EFLLEHKVIPMPL KCLVITDRNPTVIPASIKQPGNLRMISAI+LKR LAREEPTFMAIPL+EE TTEET P+EIKEV
Subjt:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV

XP_023526180.1 uncharacterized protein LOC111789739 [Cucurbita pepo subsp. pepo]4.2e-8589.3Show/hide
Query:  KFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLVIVRM
        KFLSALQRKV PKEIIEKGL+FVDATINS+ SKSTLIDSGATHNFI DQEARRLGLTIGKDPGKMKAVN EALPIVGVSK VPFK+G W GELDLV+VRM
Subjt:  KFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLVIVRM

Query:  DDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV
        DDFDVVLG EFLLEHKVIPMPL KCLVITDRNP VIPASIKQPGNLRMISAI+LKR LAREEPTFMAIPL+EE TTEET P+EIKEV
Subjt:  DDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV

XP_023537907.1 uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]2.6e-8789.01Show/hide
Query:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV
        MG LKFLSALQRKV PKEIIEKGL+FVDATINS+ SKSTLIDSGATHNFI DQEARRLGLTIGKDPGKMKAVN EALPIVGVSK VPFK+G W GELDLV
Subjt:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV

Query:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV
        +VRMDDFDVVLG EFLLEHKVIPMPL KCLVITDRNPTVIPASIKQPGNLRMISAI+LKR LAREEPTFMAIPL+EE TTEET P+EIK+V
Subjt:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV

TrEMBL top hitse value%identityAlignment
A0A6J1D906 Reverse transcriptase6.1e-6666.84Show/hide
Query:  MGTLKFLSALQRKVN-PKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDL
        M  LKFLSA+Q++VN PK   EKGL+FVDATIN   +KST++DSGATHNFI++QEARRL LTI KD GKMK VNFEALPIVGVSKRV  KLG W G +D 
Subjt:  MGTLKFLSALQRKVN-PKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDL

Query:  VIVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEVPPSL
        V+VRMDDFDVVLG EFL+EHKVIPMPL KC+++T  +PTV+  SIKQPG +RMISA++LK+ L REEPTFMAIP++E+       P E ++VPP +
Subjt:  VIVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEVPPSL

A0A6J1HU16 uncharacterized protein LOC1114661781.9e-7582.11Show/hide
Query:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV
        MG LKFLSALQRKV PKEIIEKGL+FVD TINS+PSKSTLIDSGATHNFI +QEARRLG TIGKDPGKMKAVN EALPIVGVSKRVPFK+  WIGELDLV
Subjt:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV

Query:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKE
                VVLG +FLLEHKVIPM L KCLVI DRNPTVI ASIKQPGNLRMISAI+LKR LA+EEPTFMAI LME  TTEET P+EIKE
Subjt:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKE

A0A6J1IA31 uncharacterized protein LOC1114714758.5e-8487.43Show/hide
Query:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV
        MG LKFLSALQRKV PKEIIEKGL+FVDATINS+ SKSTLIDSGATHNFI DQEARRLGLTIGKD GKMK VN EALPIVGVSKRVPFK+G W GELDLV
Subjt:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV

Query:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV
        +VRMD  DV+LG EFLLEHKVIPMPL KCLVITDRNPTVIP SIKQPGNLRMISAI LKR LAREEPTFMAIPLMEE TTEET P+EIKEV
Subjt:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV

A0A6J1IEY4 uncharacterized protein LOC1114757331.8e-8686.39Show/hide
Query:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV
        MG LKFLSALQRKV PKEI+EKGL+FVDATIN QP++STLIDSGATHNFI DQEARRLGLTIG+DPGKMKA+N EALPIVGVSKRVPFK+G W GELDLV
Subjt:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV

Query:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV
        + RMDDFDVVLG EFLLEHKVIPMPL KCLVITDRNPTVIPASIKQPGNLRMISAI+LKR LAREEPTF+AIPLME  TTEET P+EI EV
Subjt:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV

A0A6J1JPK8 uncharacterized protein LOC1114886892.7e-7476.96Show/hide
Query:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV
        MG  KFLSALQ+KV+ +E+IEKGL+FVDATINS+PSKSTLIDSG THNFI D +ARRLGLTI KD  KMK V  +ALPIVG+SKRV FKLGAW GELD V
Subjt:  MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLV

Query:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV
        +VRM+DF+VVL   FLLEHKV PMPL KCLVITD NPT+IPASIKQPGNLRMIS I+LKR L ++EPTFMAIPL+EEVTTEE+ P EIKEV
Subjt:  IVRMDDFDVVLGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCACGCTCAAATTCTTGTCAGCCCTCCAACGGAAGGTCAACCCGAAGGAGATAATAGAGAAAGGGCTCATATTTGTGGATGCGACAATAAACTCTCAACCGAGCAA
GAGTACTTTGATAGACTCAGGAGCGACTCACAACTTCATCACCGATCAAGAAGCCCGAAGATTGGGACTCACCATAGGAAAAGACCCTGGAAAAATGAAAGCTGTCAACT
TCGAGGCCTTGCCTATTGTGGGAGTTTCCAAAAGAGTCCCCTTCAAATTAGGGGCTTGGATAGGAGAGCTGGACCTTGTCATAGTTCGCATGGATGACTTTGACGTGGTA
CTTGGGAGGGAGTTCCTCCTAGAACATAAAGTTATCCCAATGCCACTGGTGAAATGCTTGGTGATCACCGACCGCAATCCCACAGTAATACCTGCAAGCATCAAGCAGCC
AGGTAATCTTAGAATGATCTCGGCCATACGATTGAAAAGAGAACTCGCACGAGAGGAACCTACATTTATGGCTATACCACTGATGGAAGAAGTGACTACTGAGGAAACTT
TCCCAGACGAAATCAAGGAGGTACCACCATCGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCACGCTCAAATTCTTGTCAGCCCTCCAACGGAAGGTCAACCCGAAGGAGATAATAGAGAAAGGGCTCATATTTGTGGATGCGACAATAAACTCTCAACCGAGCAA
GAGTACTTTGATAGACTCAGGAGCGACTCACAACTTCATCACCGATCAAGAAGCCCGAAGATTGGGACTCACCATAGGAAAAGACCCTGGAAAAATGAAAGCTGTCAACT
TCGAGGCCTTGCCTATTGTGGGAGTTTCCAAAAGAGTCCCCTTCAAATTAGGGGCTTGGATAGGAGAGCTGGACCTTGTCATAGTTCGCATGGATGACTTTGACGTGGTA
CTTGGGAGGGAGTTCCTCCTAGAACATAAAGTTATCCCAATGCCACTGGTGAAATGCTTGGTGATCACCGACCGCAATCCCACAGTAATACCTGCAAGCATCAAGCAGCC
AGGTAATCTTAGAATGATCTCGGCCATACGATTGAAAAGAGAACTCGCACGAGAGGAACCTACATTTATGGCTATACCACTGATGGAAGAAGTGACTACTGAGGAAACTT
TCCCAGACGAAATCAAGGAGGTACCACCATCGCTTTGA
Protein sequenceShow/hide protein sequence
MGTLKFLSALQRKVNPKEIIEKGLIFVDATINSQPSKSTLIDSGATHNFITDQEARRLGLTIGKDPGKMKAVNFEALPIVGVSKRVPFKLGAWIGELDLVIVRMDDFDVV
LGREFLLEHKVIPMPLVKCLVITDRNPTVIPASIKQPGNLRMISAIRLKRELAREEPTFMAIPLMEEVTTEETFPDEIKEVPPSL