CuGenDBv2

Gene ID	CmoCh04G021120
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Genome location	Cmo_Chr04:13609323..13611246
RNA-Seq Expression	CmoCh04G021120
Synteny	CmoCh04G021120
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:1901800 - positive regulation of proteasomal protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0000502 - proteasome complex (cellular component) GO:0016887 - ATPase activity (molecular function) GO:0036402 - proteasome-activating ATPase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0008194 - UDP-glycosyltransferase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR043502 - DNA/RNA polymerase superfamily IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR041588 - Integrase zinc-binding domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR036397 - Ribonuclease H superfamily IPR012337 - Ribonuclease H-like superfamily IPR001584 - Integrase, catalytic core IPR000477 - Reverse transcriptase domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025848.1 pol protein [Cucumis melo var. makuwa]

5.1e-251

67.34

Show/hide

Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        MSFGLTNAPAVFM+LMNRVFKEFLD+FV+VFIDDIL+YSK+EA+HE HL +VL  LRA +LYAKFSKCEFWL +V FLGHVVSS+G++VDPAKIEAV  W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA
         +P+TV+E+RSFLGLAG YRRFV+DFS+I+S LTQLT+KG PF W+P CE+SFQELK++LVTAPVLTVPDGSGN V+YSDAS KGLGCVLMQ+GKV+AYA
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA

Query:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT
        SRQLK +E+NYPTHDLELAAVVFALK WRHYLYGEK+Q++TDHKSLKY FTQKELNMRQRRWLELVKDYD EILYHPGKA+VVADALSRK  H++ +IT 
Subjt:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT

Query:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH
        Q  L  + +RA I V +     Q+AQLT+QPTLR+K+I AQ  D +L++    +ETE+  G+SISSD GL+++ RLCVP D  +  +++TEAH + +  H
Subjt:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH

Query:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------
        PGSTKMYQDL+  YWW GMKRD+ADFVSRCL CQQVKAPRQ PAGLLQPLSVP  +  S    F+ G  K   G+                         
Subjt:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------

Query:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI
            Q  M          VSI+SDRD RFTS+FW+ LQ ALGT+L FSTAFHPQTDGQTERLNQ+LEDMLRAC L+F+G WD HL LMEFAYNNSYQATI
Subjt:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI

Query:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV
         MAPFEALYG+ CR+PV W EVG Q+++GPELVQ TNAA+
Subjt:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV

KAA0031437.1 pol protein [Cucumis melo var. makuwa]

5.1e-251

67.34

Show/hide

Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        MSFGLTNAPAVFM+LMNRVFKEFLD+FV+VFIDDIL+YSK+EA+HE HL +VL  LRA +LYAKFSKCEFWL +V FLGHVVSS+G++VDPAKIEAV  W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA
         +P+TV+E+RSFLGLAG YRRFV+DFS+I+S LTQLT+KG PF W+P CE+SFQELK++LVTAPVLTVPDGSGN V+YSDAS KGLGCVLMQ+GKV+AYA
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA

Query:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT
        SRQLK +E+NYPTHDLELAAVVFALK WRHYLYGEK+Q++TDHKSLKY FTQKELNMRQRRWLELVKDYD EILYHPGKA+VVADALSRK  H++ +IT 
Subjt:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT

Query:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH
        Q  L  + +RA I V +     Q+AQLT+QPTLR+K+I AQ  D +L++    +ETE+  G+SISSD GL+++ RLCVP D  +  +++TEAH + +  H
Subjt:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH

Query:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------
        PGSTKMYQDL+  YWW GMKRD+ADFVSRCL CQQVKAPRQ PAGLLQPLSVP  +  S    F+ G  K   G+                         
Subjt:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------

Query:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI
            Q  M          VSI+SDRD RFTS+FW+ LQ ALGT+L FSTAFHPQTDGQTERLNQ+LEDMLRAC L+F+G WD HL LMEFAYNNSYQATI
Subjt:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI

Query:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV
         MAPFEALYG+ CR+PV W EVG Q+++GPELVQ TNAA+
Subjt:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV

KAA0033825.1 pol protein [Cucumis melo var. makuwa]

5.1e-251

67.34

Show/hide

Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        MSFGLTNAPAVFM+LMNRVFKEFLD+FV+VFIDDIL+YSK+EA+HE HL +VL  LRA +LYAKFSKCEFWL +V FLGHVVSS+G++VDPAKIEAV  W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA
         +P+TV+E+RSFLGLAG YRRFV+DFS+I+S LTQLT+KG PF W+P CE+SFQELK++LVTAPVLTVPDGSGN V+YSDAS KGLGCVLMQ+GKV+AYA
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA

Query:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT
        SRQLK +E+NYPTHDLELAAVVFALK WRHYLYGEK+Q++TDHKSLKY FTQKELNMRQRRWLELVKDYD EILYHPGKA+VVADALSRK  H++ +IT 
Subjt:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT

Query:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH
        Q  L  + +RA I V +     Q+AQLT+QPTLR+K+I AQ  D +L++    +ETE+  G+SISSD GL+++ RLCVP D  +  +++TEAH + +  H
Subjt:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH

Query:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------
        PGSTKMYQDL+  YWW GMKRD+ADFVSRCL CQQVKAPRQ PAGLLQPLSVP  +  S    F+ G  K   G+                         
Subjt:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------

Query:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI
            Q  M          VSI+SDRD RFTS+FW+ LQ ALGT+L FSTAFHPQTDGQTERLNQ+LEDMLRAC L+F+G WD HL LMEFAYNNSYQATI
Subjt:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI

Query:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV
         MAPFEALYG+ CR+PV W EVG Q+++GPELVQ TNAA+
Subjt:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV

KAA0050760.1 pol protein [Cucumis melo var. makuwa]

3.0e-251

67.5

Show/hide

Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        MSFGLTNAPAVFM+LMNRVFK+FLD+FV+VFIDDIL+YSK+EA HE HL +VL  LRA +LYAKFSKCEFWL +V FLGHVVSS+G++VDPAKIEAV  W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA
        P+P+TV+E+RSFLGLAG YRRFV+DFS+I+S LTQLT+KG PF W+P CE+SFQELK++LVTAPVLTVPDGSGN V+YSDAS KGLGCVLMQ+GKV+AYA
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA

Query:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT
        SRQLK +E+NYPTHDLELAAVVFALK WRHYLYGEK+Q++TDHKSLKY FTQKELNMRQRRWLELVKDYD EILYHPGKA+VVADALSRK  H++ +IT 
Subjt:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT

Query:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH
        Q  L  + +RA I V +     Q+AQLT+QPTLR+K+I AQ  D +L++    +ETE+  G+SISSD GL+++ RLCVP D  +  +++TEAH + +  H
Subjt:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH

Query:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------
        PGSTKMYQDL+  YWW GMKRD+ADFVSRCL CQQVKAPRQ PAGLLQPLSVP  +  S    F+ G  K   G+                         
Subjt:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------

Query:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI
            Q  M          VSIVSDRD RFTS+FW+ LQ ALGT+L FSTAFHPQTDGQTERLNQ+LEDMLRAC L+F+G WD HL LMEFAYNNSYQATI
Subjt:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI

Query:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV
         MAPFEALYG+ CR+PV W EVG Q+++GPELVQ TNAA+
Subjt:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV

XP_022931734.1 uncharacterized protein LOC111437896 [Cucurbita moschata]

6.8e-288

75.94

Show/hide

Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        MSFGLTNAPAVFMELMNRVFKEFLDTFV+VFIDDILVYSKSE +HE HLR+VLT+LR  +LYAKFSKCEFWL EVAFLGHVVSS+G+TVDPAKIEAV++W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA
        P+PTTVTEVRSFLGLAG YRRF++DFSK+S+ALTQLTKKGKPF WT  CEQSF ELKKRLVTAPVLTVPDGSG LVVYSDASGKGLGCVLMQKGKVIAYA
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA

Query:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT
        SRQLKEYERNYPTHDLELAAVV+ALKTWRHYLYGE+VQV+TDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKA+VVADALSRK  HTS +IT 
Subjt:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT

Query:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH
        Q+ LQDE++RAGI+V+ +G   Q+AQL++QPTL++++I+AQR+D HLS++W Q ETERP GYS+SS+GGL+WQ+RLCVPRDE IL++IMTEAH+TSY FH
Subjt:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH

Query:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGFQ------------------------
        PGSTKMYQDLK  YWW GMK+D+A++VSRCLTCQQVKAPRQRPAGLLQPL++P+ +       F+ G  K + GF                         
Subjt:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGFQ------------------------

Query:  ---RRM------------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI
            R+            V+IVSDRD +FTS FW+ LQKALGTQL+F+TAFHPQTDGQTERLNQ LEDMLRAC +DFAGCWDEHL LMEFAYNNSYQATI
Subjt:  ---RRM------------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI

Query:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV
        QMAPFEALYGRRCRTP+FWEEVG +QL+GPELVQ TNAAV
Subjt:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TEQ2 Reverse transcriptase

2.5e-251

67.34

Show/hide

Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        MSFGLTNAPAVFM+LMNRVFKEFLD+FV+VFIDDIL+YSK+EA+HE HL +VL  LRA +LYAKFSKCEFWL +V FLGHVVSS+G++VDPAKIEAV  W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA
         +P+TV+E+RSFLGLAG YRRFV+DFS+I+S LTQLT+KG PF W+P CE+SFQELK++LVTAPVLTVPDGSGN V+YSDAS KGLGCVLMQ+GKV+AYA
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA

Query:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT
        SRQLK +E+NYPTHDLELAAVVFALK WRHYLYGEK+Q++TDHKSLKY FTQKELNMRQRRWLELVKDYD EILYHPGKA+VVADALSRK  H++ +IT 
Subjt:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT

Query:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH
        Q  L  + +RA I V +     Q+AQLT+QPTLR+K+I AQ  D +L++    +ETE+  G+SISSD GL+++ RLCVP D  +  +++TEAH + +  H
Subjt:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH

Query:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------
        PGSTKMYQDL+  YWW GMKRD+ADFVSRCL CQQVKAPRQ PAGLLQPLSVP  +  S    F+ G  K   G+                         
Subjt:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------

Query:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI
            Q  M          VSI+SDRD RFTS+FW+ LQ ALGT+L FSTAFHPQTDGQTERLNQ+LEDMLRAC L+F+G WD HL LMEFAYNNSYQATI
Subjt:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI

Query:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV
         MAPFEALYG+ CR+PV W EVG Q+++GPELVQ TNAA+
Subjt:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV

A0A5A7U6G5 Reverse transcriptase

1.5e-251

67.5

Show/hide

Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        MSFGLTNAPAVFM+LMNRVFK+FLD+FV+VFIDDIL+YSK+EA HE HL +VL  LRA +LYAKFSKCEFWL +V FLGHVVSS+G++VDPAKIEAV  W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA
        P+P+TV+E+RSFLGLAG YRRFV+DFS+I+S LTQLT+KG PF W+P CE+SFQELK++LVTAPVLTVPDGSGN V+YSDAS KGLGCVLMQ+GKV+AYA
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA

Query:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT
        SRQLK +E+NYPTHDLELAAVVFALK WRHYLYGEK+Q++TDHKSLKY FTQKELNMRQRRWLELVKDYD EILYHPGKA+VVADALSRK  H++ +IT 
Subjt:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT

Query:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH
        Q  L  + +RA I V +     Q+AQLT+QPTLR+K+I AQ  D +L++    +ETE+  G+SISSD GL+++ RLCVP D  +  +++TEAH + +  H
Subjt:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH

Query:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------
        PGSTKMYQDL+  YWW GMKRD+ADFVSRCL CQQVKAPRQ PAGLLQPLSVP  +  S    F+ G  K   G+                         
Subjt:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------

Query:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI
            Q  M          VSIVSDRD RFTS+FW+ LQ ALGT+L FSTAFHPQTDGQTERLNQ+LEDMLRAC L+F+G WD HL LMEFAYNNSYQATI
Subjt:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI

Query:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV
         MAPFEALYG+ CR+PV W EVG Q+++GPELVQ TNAA+
Subjt:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV

A0A5A7UBS1 Reverse transcriptase

2.5e-251

67.34

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Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        MSFGLTNAPAVFM+LMNRVFKEFLD+FV+VFIDDIL+YSK+EA+HE HL +VL  LRA +LYAKFSKCEFWL +V FLGHVVSS+G++VDPAKIEAV  W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA
         +P+TV+E+RSFLGLAG YRRFV+DFS+I+S LTQLT+KG PF W+P CE+SFQELK++LVTAPVLTVPDGSGN V+YSDAS KGLGCVLMQ+GKV+AYA
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA

Query:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT
        SRQLK +E+NYPTHDLELAAVVFALK WRHYLYGEK+Q++TDHKSLKY FTQKELNMRQRRWLELVKDYD EILYHPGKA+VVADALSRK  H++ +IT 
Subjt:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT

Query:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH
        Q  L  + +RA I V +     Q+AQLT+QPTLR+K+I AQ  D +L++    +ETE+  G+SISSD GL+++ RLCVP D  +  +++TEAH + +  H
Subjt:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH

Query:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------
        PGSTKMYQDL+  YWW GMKRD+ADFVSRCL CQQVKAPRQ PAGLLQPLSVP  +  S    F+ G  K   G+                         
Subjt:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------

Query:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI
            Q  M          VSI+SDRD RFTS+FW+ LQ ALGT+L FSTAFHPQTDGQTERLNQ+LEDMLRAC L+F+G WD HL LMEFAYNNSYQATI
Subjt:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI

Query:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV
         MAPFEALYG+ CR+PV W EVG Q+++GPELVQ TNAA+
Subjt:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV

A0A5D3CQB5 Reverse transcriptase

2.5e-251

67.34

Show/hide

Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        MSFGLTNAPAVFM+LMNRVFKEFLD+FV+VFIDDIL+YSK+EA+HE HL +VL  LRA +LYAKFSKCEFWL +V FLGHVVSS+G++VDPAKIEAV  W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA
         +P+TV+E+RSFLGLAG YRRFV+DFS+I+S LTQLT+KG PF W+P CE+SFQELK++LVTAPVLTVPDGSGN V+YSDAS KGLGCVLMQ+GKV+AYA
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA

Query:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT
        SRQLK +E+NYPTHDLELAAVVFALK WRHYLYGEK+Q++TDHKSLKY FTQKELNMRQRRWLELVKDYD EILYHPGKA+VVADALSRK  H++ +IT 
Subjt:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT

Query:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH
        Q  L  + +RA I V +     Q+AQLT+QPTLR+K+I AQ  D +L++    +ETE+  G+SISSD GL+++ RLCVP D  +  +++TEAH + +  H
Subjt:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH

Query:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------
        PGSTKMYQDL+  YWW GMKRD+ADFVSRCL CQQVKAPRQ PAGLLQPLSVP  +  S    F+ G  K   G+                         
Subjt:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGF-------------------------

Query:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI
            Q  M          VSI+SDRD RFTS+FW+ LQ ALGT+L FSTAFHPQTDGQTERLNQ+LEDMLRAC L+F+G WD HL LMEFAYNNSYQATI
Subjt:  ----QRRM----------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI

Query:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV
         MAPFEALYG+ CR+PV W EVG Q+++GPELVQ TNAA+
Subjt:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV

A0A6J1EV26 Reverse transcriptase

3.3e-288

75.94

Show/hide

Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        MSFGLTNAPAVFMELMNRVFKEFLDTFV+VFIDDILVYSKSE +HE HLR+VLT+LR  +LYAKFSKCEFWL EVAFLGHVVSS+G+TVDPAKIEAV++W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA
        P+PTTVTEVRSFLGLAG YRRF++DFSK+S+ALTQLTKKGKPF WT  CEQSF ELKKRLVTAPVLTVPDGSG LVVYSDASGKGLGCVLMQKGKVIAYA
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYA

Query:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT
        SRQLKEYERNYPTHDLELAAVV+ALKTWRHYLYGE+VQV+TDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKA+VVADALSRK  HTS +IT 
Subjt:  SRQLKEYERNYPTHDLELAAVVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITT

Query:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH
        Q+ LQDE++RAGI+V+ +G   Q+AQL++QPTL++++I+AQR+D HLS++W Q ETERP GYS+SS+GGL+WQ+RLCVPRDE IL++IMTEAH+TSY FH
Subjt:  QEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFH

Query:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGFQ------------------------
        PGSTKMYQDLK  YWW GMK+D+A++VSRCLTCQQVKAPRQRPAGLLQPL++P+ +       F+ G  K + GF                         
Subjt:  PGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGFQ------------------------

Query:  ---RRM------------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI
            R+            V+IVSDRD +FTS FW+ LQKALGTQL+F+TAFHPQTDGQTERLNQ LEDMLRAC +DFAGCWDEHL LMEFAYNNSYQATI
Subjt:  ---RRM------------VSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEFAYNNSYQATI

Query:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV
        QMAPFEALYGRRCRTP+FWEEVG +QL+GPELVQ TNAAV
Subjt:  QMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

3.4e-80

29.89

Show/hide

Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        M +G++ APA F   +N +  E  ++ V+ ++DDIL++SKSE++H  H++ VL  L+   L    +KCEF  S+V F+G+ +S KG T     I+ V++W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGK-----
         QP    E+R FLG     R+F+   S+++  L  L KK   + WTP   Q+ + +K+ LV+ PVL   D S  +++ +DAS   +G VL QK       
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGK-----

Query:  VIAYASRQLKEYERNYPTHDLELAAVVFALKTWRHYLYG--EKVQVFTDHKSLKYLFTQKE--LNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKA
         + Y S ++ + + NY   D E+ A++ +LK WRHYL    E  ++ TDH++L    T +    N R  RW   ++D++ EI Y PG A+ +ADALSR  
Subjt:  VIAYASRQLKEYERNYPTHDLELAAVVFALKTWRHYLYG--EKVQVFTDHKSLKYLFTQKE--LNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKA

Query:  VHTSVMITTQEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLL--WQNRLCVPRDEGILKDIM
             ++   E +  + +   I+ V         Q++I    + +V+    +D  L  + +    ++ V  +I    GLL   ++++ +P D  + + I+
Subjt:  VHTSVMITTQEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLL--WQNRLCVPRDEGILKDIM

Query:  TEAHDTSYMFHPGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPL----------------SVPRVEMGSSLYGFLFGFAK---
         + H+   + HPG   +   + R + W G+++ I ++V  C TCQ  K+   +P G LQP+                ++P     ++L+  +  F+K   
Subjt:  TEAHDTSYMFHPGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPL----------------SVPRVEMGSSLYGFLFGFAK---

Query:  ------------DKAGFQRRMVS-------IVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEF
                        F +R+++       I++D D  FTSQ W+         ++FS  + PQTDGQTER NQ +E +LR         W +H+ L++ 
Subjt:  ------------DKAGFQRRMVS-------IVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEF

Query:  AYNNSYQATIQMAPFEALY
        +YNN+  +  QM PFE ++
Subjt:  AYNNSYQATIQMAPFEALY

P0CT35 Transposon Tf2-2 polyprotein

3.4e-80

29.89

Show/hide

Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        M +G++ APA F   +N +  E  ++ V+ ++DDIL++SKSE++H  H++ VL  L+   L    +KCEF  S+V F+G+ +S KG T     I+ V++W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGK-----
         QP    E+R FLG     R+F+   S+++  L  L KK   + WTP   Q+ + +K+ LV+ PVL   D S  +++ +DAS   +G VL QK       
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGK-----

Query:  VIAYASRQLKEYERNYPTHDLELAAVVFALKTWRHYLYG--EKVQVFTDHKSLKYLFTQKE--LNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKA
         + Y S ++ + + NY   D E+ A++ +LK WRHYL    E  ++ TDH++L    T +    N R  RW   ++D++ EI Y PG A+ +ADALSR  
Subjt:  VIAYASRQLKEYERNYPTHDLELAAVVFALKTWRHYLYG--EKVQVFTDHKSLKYLFTQKE--LNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKA

Query:  VHTSVMITTQEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLL--WQNRLCVPRDEGILKDIM
             ++   E +  + +   I+ V         Q++I    + +V+    +D  L  + +    ++ V  +I    GLL   ++++ +P D  + + I+
Subjt:  VHTSVMITTQEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLL--WQNRLCVPRDEGILKDIM

Query:  TEAHDTSYMFHPGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPL----------------SVPRVEMGSSLYGFLFGFAK---
         + H+   + HPG   +   + R + W G+++ I ++V  C TCQ  K+   +P G LQP+                ++P     ++L+  +  F+K   
Subjt:  TEAHDTSYMFHPGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPL----------------SVPRVEMGSSLYGFLFGFAK---

Query:  ------------DKAGFQRRMVS-------IVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEF
                        F +R+++       I++D D  FTSQ W+         ++FS  + PQTDGQTER NQ +E +LR         W +H+ L++ 
Subjt:  ------------DKAGFQRRMVS-------IVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEF

Query:  AYNNSYQATIQMAPFEALY
        +YNN+  +  QM PFE ++
Subjt:  AYNNSYQATIQMAPFEALY

P0CT36 Transposon Tf2-3 polyprotein

3.4e-80

29.89

Show/hide

Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        M +G++ APA F   +N +  E  ++ V+ ++DDIL++SKSE++H  H++ VL  L+   L    +KCEF  S+V F+G+ +S KG T     I+ V++W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGK-----
         QP    E+R FLG     R+F+   S+++  L  L KK   + WTP   Q+ + +K+ LV+ PVL   D S  +++ +DAS   +G VL QK       
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGK-----

Query:  VIAYASRQLKEYERNYPTHDLELAAVVFALKTWRHYLYG--EKVQVFTDHKSLKYLFTQKE--LNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKA
         + Y S ++ + + NY   D E+ A++ +LK WRHYL    E  ++ TDH++L    T +    N R  RW   ++D++ EI Y PG A+ +ADALSR  
Subjt:  VIAYASRQLKEYERNYPTHDLELAAVVFALKTWRHYLYG--EKVQVFTDHKSLKYLFTQKE--LNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKA

Query:  VHTSVMITTQEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLL--WQNRLCVPRDEGILKDIM
             ++   E +  + +   I+ V         Q++I    + +V+    +D  L  + +    ++ V  +I    GLL   ++++ +P D  + + I+
Subjt:  VHTSVMITTQEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLL--WQNRLCVPRDEGILKDIM

Query:  TEAHDTSYMFHPGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPL----------------SVPRVEMGSSLYGFLFGFAK---
         + H+   + HPG   +   + R + W G+++ I ++V  C TCQ  K+   +P G LQP+                ++P     ++L+  +  F+K   
Subjt:  TEAHDTSYMFHPGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPL----------------SVPRVEMGSSLYGFLFGFAK---

Query:  ------------DKAGFQRRMVS-------IVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEF
                        F +R+++       I++D D  FTSQ W+         ++FS  + PQTDGQTER NQ +E +LR         W +H+ L++ 
Subjt:  ------------DKAGFQRRMVS-------IVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEF

Query:  AYNNSYQATIQMAPFEALY
        +YNN+  +  QM PFE ++
Subjt:  AYNNSYQATIQMAPFEALY

P0CT37 Transposon Tf2-4 polyprotein

3.4e-80

29.89

Show/hide

Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        M +G++ APA F   +N +  E  ++ V+ ++DDIL++SKSE++H  H++ VL  L+   L    +KCEF  S+V F+G+ +S KG T     I+ V++W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGK-----
         QP    E+R FLG     R+F+   S+++  L  L KK   + WTP   Q+ + +K+ LV+ PVL   D S  +++ +DAS   +G VL QK       
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGK-----

Query:  VIAYASRQLKEYERNYPTHDLELAAVVFALKTWRHYLYG--EKVQVFTDHKSLKYLFTQKE--LNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKA
         + Y S ++ + + NY   D E+ A++ +LK WRHYL    E  ++ TDH++L    T +    N R  RW   ++D++ EI Y PG A+ +ADALSR  
Subjt:  VIAYASRQLKEYERNYPTHDLELAAVVFALKTWRHYLYG--EKVQVFTDHKSLKYLFTQKE--LNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKA

Query:  VHTSVMITTQEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLL--WQNRLCVPRDEGILKDIM
             ++   E +  + +   I+ V         Q++I    + +V+    +D  L  + +    ++ V  +I    GLL   ++++ +P D  + + I+
Subjt:  VHTSVMITTQEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLL--WQNRLCVPRDEGILKDIM

Query:  TEAHDTSYMFHPGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPL----------------SVPRVEMGSSLYGFLFGFAK---
         + H+   + HPG   +   + R + W G+++ I ++V  C TCQ  K+   +P G LQP+                ++P     ++L+  +  F+K   
Subjt:  TEAHDTSYMFHPGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPL----------------SVPRVEMGSSLYGFLFGFAK---

Query:  ------------DKAGFQRRMVS-------IVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEF
                        F +R+++       I++D D  FTSQ W+         ++FS  + PQTDGQTER NQ +E +LR         W +H+ L++ 
Subjt:  ------------DKAGFQRRMVS-------IVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEF

Query:  AYNNSYQATIQMAPFEALY
        +YNN+  +  QM PFE ++
Subjt:  AYNNSYQATIQMAPFEALY

P0CT41 Transposon Tf2-12 polyprotein

3.4e-80

29.89

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Query:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW
        M +G++ APA F   +N +  E  ++ V+ ++DDIL++SKSE++H  H++ VL  L+   L    +KCEF  S+V F+G+ +S KG T     I+ V++W
Subjt:  MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRW

Query:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGK-----
         QP    E+R FLG     R+F+   S+++  L  L KK   + WTP   Q+ + +K+ LV+ PVL   D S  +++ +DAS   +G VL QK       
Subjt:  PQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGK-----

Query:  VIAYASRQLKEYERNYPTHDLELAAVVFALKTWRHYLYG--EKVQVFTDHKSLKYLFTQKE--LNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKA
         + Y S ++ + + NY   D E+ A++ +LK WRHYL    E  ++ TDH++L    T +    N R  RW   ++D++ EI Y PG A+ +ADALSR  
Subjt:  VIAYASRQLKEYERNYPTHDLELAAVVFALKTWRHYLYG--EKVQVFTDHKSLKYLFTQKE--LNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKA

Query:  VHTSVMITTQEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLL--WQNRLCVPRDEGILKDIM
             ++   E +  + +   I+ V         Q++I    + +V+    +D  L  + +    ++ V  +I    GLL   ++++ +P D  + + I+
Subjt:  VHTSVMITTQEKLQDEMKRAGIDVVIKGGNVQIAQLTIQPTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLL--WQNRLCVPRDEGILKDIM

Query:  TEAHDTSYMFHPGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPL----------------SVPRVEMGSSLYGFLFGFAK---
         + H+   + HPG   +   + R + W G+++ I ++V  C TCQ  K+   +P G LQP+                ++P     ++L+  +  F+K   
Subjt:  TEAHDTSYMFHPGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPRQRPAGLLQPL----------------SVPRVEMGSSLYGFLFGFAK---

Query:  ------------DKAGFQRRMVS-------IVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEF
                        F +R+++       I++D D  FTSQ W+         ++FS  + PQTDGQTER NQ +E +LR         W +H+ L++ 
Subjt:  ------------DKAGFQRRMVS-------IVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLMEF

Query:  AYNNSYQATIQMAPFEALY
        +YNN+  +  QM PFE ++
Subjt:  AYNNSYQATIQMAPFEALY

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

3.8e-26

45.6

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Query:  HLRKVLTILRAQQLYAKFSKCEFWLSEVAFLG--HVVSSKGITVDPAKIEAVMRWPQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAW
        HL  VL I    Q YA   KC F   ++A+LG  H++S +G++ DPAK+EA++ WP+P   TE+R FLGL G YRRFV+++ KI   LT+L KK     W
Subjt:  HLRKVLTILRAQQLYAKFSKCEFWLSEVAFLG--HVVSSKGITVDPAKIEAVMRWPQPTTVTEVRSFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAW

Query:  TPVCEQSFQELKKRLVTAPVLTVPD
        T +   +F+ LK  + T PVL +PD
Subjt:  TPVCEQSFQELKKRLVTAPVLTVPD

Sequences

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CDS sequence

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ATGTCTTTTGGCCTTACCAATGCACCAGCTGTTTTCATGGAACTAATGAACAGGGTGTTTAAGGAATTCTTAGACACCTTTGTCTTAGTGTTCATCGACGACATTCTGGT
ATACTCTAAGTCAGAGGCAGATCATGAAATACACCTCAGAAAAGTCTTGACAATACTAAGAGCTCAGCAGTTGTATGCCAAGTTCTCTAAGTGTGAGTTTTGGTTGTCTG
AAGTTGCGTTTCTGGGTCACGTGGTGTCAAGCAAGGGGATCACAGTGGACCCAGCTAAGATAGAAGCAGTGATGAGGTGGCCACAGCCGACCACAGTCACAGAGGTGAGG
AGTTTTCTTGGGCTAGCTGGTTGTTACAGAAGGTTTGTTCAGGATTTCTCCAAAATTTCCTCGGCGCTGACTCAGCTAACCAAGAAGGGCAAGCCCTTTGCTTGGACTCC
AGTCTGTGAACAGAGTTTCCAGGAACTCAAGAAGAGGTTGGTAACTGCACCAGTCCTTACGGTTCCAGATGGGTCAGGTAATCTCGTGGTGTACAGTGATGCATCAGGGA
AAGGCTTGGGGTGTGTGCTCATGCAGAAAGGTAAGGTGATAGCGTATGCTTCTCGACAATTGAAAGAATATGAACGAAACTACCCCACGCATGATCTCGAGTTAGCAGCG
GTAGTATTCGCTCTAAAAACGTGGCGGCACTACCTGTATGGGGAAAAAGTACAAGTCTTCACTGATCATAAGAGCCTCAAGTACTTATTCACGCAGAAGGAGCTCAATAT
GAGACAGAGGCGATGGTTGGAGCTGGTAAAGGATTATGACATAGAGATTCTGTACCATCCAGGCAAAGCCAGCGTGGTAGCTGATGCATTGAGCAGGAAGGCTGTGCATA
CTTCTGTGATGATCACCACACAGGAAAAACTACAAGATGAGATGAAGAGGGCTGGGATAGACGTGGTGATTAAAGGTGGTAATGTTCAGATAGCACAGTTAACTATACAG
CCTACCCTACGAAAGAAAGTTATCGACGCTCAGAGGTCTGATGAACACCTCAGTAAAGTGTGGAGTCAGATTGAGACAGAGAGGCCAGTAGGGTATTCTATCTCCTCAGA
CGGGGGTCTGCTATGGCAAAACCGCCTGTGCGTTCCCCGAGACGAGGGAATCTTAAAAGATATTATGACCGAAGCCCACGATACATCTTATATGTTCCACCCTGGAAGTA
CAAAGATGTATCAGGATCTGAAGAGGTTTTACTGGTGGTCCGGAATGAAGAGGGACATAGCGGATTTCGTAAGCCGTTGCTTGACCTGCCAGCAGGTGAAGGCCCCGAGG
CAGCGCCCAGCGGGATTGCTACAGCCCCTGAGCGTCCCTCGTGTGGAAATGGGAAGCAGTCTGTATGGATTTCTTTTCGGGTTTGCCAAAGACAAAGCAGGGTTTCAACG
TCGTATGGTGTCCATAGTATCAGACCGGGACACCAGGTTCACCTCTCAGTTCTGGAGGAGTCTTCAGAAGGCACTAGGAACTCAGTTGAGGTTCAGTACAGCATTCCATC
CTCAAACGGACGGACAGACCGAAAGGCTGAATCAGGTTTTAGAGGACATGTTGCGAGCCTGCTCCTTAGATTTCGCTGGGTGTTGGGACGAACATCTGCCTTTAATGGAG
TTTGCCTACAACAATAGTTATCAAGCGACCATTCAGATGGCCCCCTTCGAGGCACTGTATGGGCGTAGGTGTCGAACACCAGTGTTTTGGGAAGAGGTAGGCACGCAGCA
ACTAATGGGACCAGAGTTGGTCCAGGTCACCAACGCAGCGGTGTAG

mRNA sequence

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Protein sequence

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MSFGLTNAPAVFMELMNRVFKEFLDTFVLVFIDDILVYSKSEADHEIHLRKVLTILRAQQLYAKFSKCEFWLSEVAFLGHVVSSKGITVDPAKIEAVMRWPQPTTVTEVR
SFLGLAGCYRRFVQDFSKISSALTQLTKKGKPFAWTPVCEQSFQELKKRLVTAPVLTVPDGSGNLVVYSDASGKGLGCVLMQKGKVIAYASRQLKEYERNYPTHDLELAA
VVFALKTWRHYLYGEKVQVFTDHKSLKYLFTQKELNMRQRRWLELVKDYDIEILYHPGKASVVADALSRKAVHTSVMITTQEKLQDEMKRAGIDVVIKGGNVQIAQLTIQ
PTLRKKVIDAQRSDEHLSKVWSQIETERPVGYSISSDGGLLWQNRLCVPRDEGILKDIMTEAHDTSYMFHPGSTKMYQDLKRFYWWSGMKRDIADFVSRCLTCQQVKAPR
QRPAGLLQPLSVPRVEMGSSLYGFLFGFAKDKAGFQRRMVSIVSDRDTRFTSQFWRSLQKALGTQLRFSTAFHPQTDGQTERLNQVLEDMLRACSLDFAGCWDEHLPLME
FAYNNSYQATIQMAPFEALYGRRCRTPVFWEEVGTQQLMGPELVQVTNAAV

CmoCh04G021120 (gene) of Cucurbita moschata (Rifu) v1 genome