CuGenDBv2

Gene ID	CmoCh04G021270
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	ubiquitin domain-containing protein 7SL RNA2-like
Genome location	Cmo_Chr04:14103993..14104340
RNA-Seq Expression	CmoCh04G021270
Synteny	CmoCh04G021270
Gene Ontology terms	GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process (biological process) GO:0005654 - nucleoplasm (cellular component) GO:0005829 - cytosol (cellular component) GO:0031593 - polyubiquitin modification-dependent protein binding (molecular function) GO:0043130 - ubiquitin binding (molecular function) GO:0070628 - proteasome binding (molecular function)
InterPro domains	IPR000626 - Ubiquitin-like domain IPR029071 - Ubiquitin-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6603761.1 Ubiquitin domain-containing protein 7SL RNA1, partial [Cucurbita argyrosperma subsp. sororia]

9.4e-45

87.72

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Query:  TTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHG
        T PP QPSTTTTTTT AA TVATSGSSKNKLKVMVQ KF NSKI MEV+PTDNVG+LKKEL KLQQRLHFHLPPE FFFIYDRDVMDEDRSF WHGVAHG
Subjt:  TTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHG

Query:  DTIEIFNSNVSGGS
        DTIEIFN +VSGGS
Subjt:  DTIEIFNSNVSGGS

XP_022930090.1 biquitin domain-containing protein 7SL RNA1-like [Cucurbita moschata]

1.7e-54

100

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Query:  MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAH
        MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAH
Subjt:  MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAH

Query:  GDTIEIFNSNVSGGS
        GDTIEIFNSNVSGGS
Subjt:  GDTIEIFNSNVSGGS

XP_022950206.1 biquitin domain-containing protein 7SL RNA1-like [Cucurbita moschata]

9.4e-37

79.09

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Query:  LQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIE
        L+PS T +T    A    T+GSSKNKLKVMVQ KF NSKI MEV+PTDNVG+LKKEL KLQQRLHFHLPPE FFFIYDRDVMDEDRSF WHGVAHGDTIE
Subjt:  LQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIE

Query:  IFNSNVSGGS
        IFN +VSGGS
Subjt:  IFNSNVSGGS

XP_022972905.1 ubiquitin domain-containing protein 7SL RNA2-like [Cucurbita maxima]

1.7e-41

83.48

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Query:  MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAH
        MTTPP   +TTT TTT AAV VATSGSSKNKLKV+VQ KF NSKI MEVSPTDNVGKLKKEL KLQQRLHFHLPPE FFFIYDRDVMDEDRSF WHGVAH
Subjt:  MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAH

Query:  GDTIEIFNSNVSGGS
         D+IEIFN +VSG S
Subjt:  GDTIEIFNSNVSGGS

XP_023524537.1 ubiquitin domain-containing protein 7SL RNA2-like [Cucurbita pepo subsp. pepo]

3.5e-39

80.87

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Query:  MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAH
        +TT PLQ   TTTTTT   + VATSGSSKNKLKVMVQ KF NSKI MEV+PTDNVGKLKKEL KLQ+RLHFHLP E FFFIYDRDVM EDRSF WHGVAH
Subjt:  MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAH

Query:  GDTIEIFNSNVSGGS
        GDTIEIFN +VSGGS
Subjt:  GDTIEIFNSNVSGGS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1EW13 biquitin domain-containing protein 7SL RNA1-like

8.3e-55

100

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Query:  MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAH
        MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAH
Subjt:  MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAH

Query:  GDTIEIFNSNVSGGS
        GDTIEIFNSNVSGGS
Subjt:  GDTIEIFNSNVSGGS

A0A6J1GE65 biquitin domain-containing protein 7SL RNA1-like

4.6e-37

79.09

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Query:  LQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIE
        L+PS T +T    A    T+GSSKNKLKVMVQ KF NSKI MEV+PTDNVG+LKKEL KLQQRLHFHLPPE FFFIYDRDVMDEDRSF WHGVAHGDTIE
Subjt:  LQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIE

Query:  IFNSNVSGGS
        IFN +VSGGS
Subjt:  IFNSNVSGGS

A0A6J1I9Y4 ubiquitin domain-containing protein 7SL RNA2-like

8.1e-42

83.48

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Query:  MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAH
        MTTPP   +TTT TTT AAV VATSGSSKNKLKV+VQ KF NSKI MEVSPTDNVGKLKKEL KLQQRLHFHLPPE FFFIYDRDVMDEDRSF WHGVAH
Subjt:  MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAH

Query:  GDTIEIFNSNVSGGS
         D+IEIFN +VSG S
Subjt:  GDTIEIFNSNVSGGS

A0A6J1IDL7 uncharacterized protein LOC111472183

1.4e-33

78.5

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Query:  STTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFN
        S + TTTT AAV VATSGSSKNKLKVMVQ KF NSKI MEV+PT+NVG+LKKEL KLQQRLHFH PPE FFFIYD D    DRSF WHGVAH DTIEIFN
Subjt:  STTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFN

Query:  SNVSGGS
         +VSGGS
Subjt:  SNVSGGS

A0A6J1IPZ4 biquitin domain-containing protein 7SL RNA1-like

3.0e-36

77.48

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Query:  LQPSTTTTTTTAAAVTVATS-GSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTI
        L+PS T +T      T     GSSKNKLKVMVQ KF NSKI MEV+PTDNVG+LKKEL KLQQRLHFHLPPE FFFIYDRDVMDEDRSF WHGVAHGDTI
Subjt:  LQPSTTTTTTTAAAVTVATS-GSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTI

Query:  EIFNSNVSGGS
        EIFN +VSGGS
Subjt:  EIFNSNVSGGS

SwissProt top hits

e value

%identity

Alignment

Q9ZQZ6 Ubiquitin domain-containing protein 7SL RNA2

6.2e-07

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Query:  NKLKVMVQLK---FENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEI
        N +K  V +K    +   I +EV+  DNV +L+KEL K+Q+R   +LP E F  +     + E +SF W+ VA GDTIE+
Subjt:  NKLKVMVQLK---FENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEI

Q9ZT95 Ubiquitin domain-containing protein 7SL RNA1

7.6e-05

35.09

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Query:  TTPPLQPSTTTTTTTAAAVTVATSGS------SKNKLKVMVQLK---FENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRS
        T   +QP+   +T+  A   +  S S        N +K  V +K    +   I +EV+  DNV +L+KEL K+Q+R   +LP E F  +     + E +S
Subjt:  TTPPLQPSTTTTTTTAAAVTVATSGS------SKNKLKVMVQLK---FENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRS

Query:  FHWHGVAHGDTIEI
        F W+ VA GDTIEI
Subjt:  FHWHGVAHGDTIEI

Arabidopsis top hits

e value

%identity

Alignment

AT4G02950.1 Ubiquitin family protein

4.4e-08

42.31

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Query:  KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFI--YDRDVMDEDRSFHWHGVAHGDTIEI
        K+ VM+Q       I +EV+  DNV +L+KEL K+Q+R   +LP   ++ I  + + V+ ED+SF  +GVA+GDTI+I
Subjt:  KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFI--YDRDVMDEDRSFHWHGVAHGDTIEI

AT4G03350.1 ubiquitin family protein

4.4e-08

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Query:  NKLKVMVQLK---FENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEI
        N +K  V +K    +   I +EV+  DNV +L+KEL K+Q+R   +LP E F  +     + E +SF W+ VA GDTIE+
Subjt:  NKLKVMVQLK---FENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEI

AT4G03360.1 Ubiquitin family protein

2.0e-08

43.59

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Query:  KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFI--YDRDVMDEDRSFHWHGVAHGDTIEI
        K+ VMVQ       I +EV+  DNV +L+KEL K+Q+R   +LP   ++ I  + + V+ ED+SF  +GVA+GDTI+I
Subjt:  KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFI--YDRDVMDEDRSFHWHGVAHGDTIEI

AT4G03370.1 Ubiquitin family protein

4.5e-13

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Query:  KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVS
        K+ VMVQ   E  +I +EV+   NV  L+KEL K+Q+R   +LP E FFFI+ +DV+ ED+SF  + VA GDTIEIF   V+
Subjt:  KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSNVS

AT4G05230.1 Ubiquitin-like superfamily protein

8.6e-20

48.72

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Query:  PSTTTTTTTA-----AAVTVATSGSSKN----KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGV
        P + +T  T+     + V +  S ++ N    KL+VMV  K    KI ++V+  DNVG+L+KEL K+QQR    LP E +FFIY ++VMDE+RSF WH V
Subjt:  PSTTTTTTTA-----AAVTVATSGSSKN----KLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGV

Query:  AHGDTIEIFNSNVSGGS
          GDTIEIFN +VSGGS
Subjt:  AHGDTIEIFNSNVSGGS

Sequences

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CDS sequence

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ATGACAACGCCGCCGCTGCAGCCGTCGACGACAACGACAACGACGACGGCGGCGGCTGTGACGGTGGCAACGAGTGGGTCGTCGAAGAATAAGTTGAAAGTAATGGTGCA
ACTGAAATTTGAGAACTCAAAGATATCAATGGAAGTGAGCCCAACGGATAACGTGGGGAAATTGAAGAAAGAGCTGCATAAGCTACAGCAGAGACTGCATTTTCATCTGC
CACCAGAGGATTTCTTTTTCATTTATGACCGCGACGTTATGGACGAAGACCGCTCCTTCCATTGGCATGGTGTGGCCCACGGTGATACCATTGAGATCTTCAATAGCAAC
GTTTCTGGCGGATCTTAA

mRNA sequence

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Protein sequence

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MTTPPLQPSTTTTTTTAAAVTVATSGSSKNKLKVMVQLKFENSKISMEVSPTDNVGKLKKELHKLQQRLHFHLPPEDFFFIYDRDVMDEDRSFHWHGVAHGDTIEIFNSN
VSGGS

CmoCh04G021270 (gene) of Cucurbita moschata (Rifu) v1 genome