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CmoCh04G021710 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G021710
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S rib s in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Genome locationCmo_Chr04:15815507..15815959
RNA-Seq ExpressionCmoCh04G021710
SyntenyCmoCh04G021710
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601820.1 hypothetical protein SDJN03_07053, partial [Cucurbita argyrosperma subsp. sororia]3.2e-7797.33Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRR ALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
        RNVTPVCREEDGEIGPT WHPGSPRPGWTGFR+KYLLRKTWRPLLA IPE
Subjt:  RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE

KAG7032525.1 hypothetical protein SDJN02_06574, partial [Cucurbita argyrosperma subsp. argyrosperma]6.5e-7898Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
        RNVTPVCREEDGEIGPT WHPGSPRPGWTGFR+KYLLRKTWRPLLA IPE
Subjt:  RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE

XP_022963063.1 uncharacterized protein LOC111463373 [Cucurbita moschata]1.5e-79100Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
        RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
Subjt:  RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE

XP_022971824.1 uncharacterized protein LOC111470493 [Cucurbita maxima]4.3e-7495.33Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA    RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
        RNVTPVCREEDGEIGPT WHPGSPRPGWTGFR+KYLLRKTWRPLLA IPE
Subjt:  RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE

XP_023513243.1 uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo]2.1e-7696.67Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDES+ EINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
        RNVTPVCREEDGEIGPT WHPGSPRPGWTGFR+KYLLRKTWRPLLA IPE
Subjt:  RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE

TrEMBL top hitse value%identityAlignment
A0A0A0KPK6 Uncharacterized protein1.5e-5977.78Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPD-KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAP
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRR+LP+ K RDD K LSRSNTLKDLFVSSPPY  +D ++++T   AP
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPD-KKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAP

Query:  IRNVTPVC--REEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
         RNVTPVC   +E+G +G   W+PGSPRPGWTGFR+KYLLRKTWRP+L  IPE
Subjt:  IRNVTPVC--REEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE

A0A6J1DFV6 uncharacterized protein LOC1110200649.1e-6282.89Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS RRSPRRRALPDKKR DH DL+RSNTLKDLFVSSPPYD +DGEI E  A A  
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  R-NVTPVCRE-EDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
          N+ PVC+E EDGE+G T W PGSPRP WTGFR+KYLLRKTWRP+LA IPE
Subjt:  R-NVTPVCRE-EDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE

A0A6J1HGM7 uncharacterized protein LOC1114633737.4e-80100Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
        RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
Subjt:  RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE

A0A6J1I9M9 uncharacterized protein LOC1114704932.1e-7495.33Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSA    RRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
        RNVTPVCREEDGEIGPT WHPGSPRPGWTGFR+KYLLRKTWRPLLA IPE
Subjt:  RNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE

A0A6J1K1U6 uncharacterized protein LOC1114898571.2e-5878.81Show/hide
Query:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI
        MASLLKFKLL THCGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN +RRSPRR ALP+K  DD KDLSR N LKDLFVSSPPYD +DG INET  AAPI
Subjt:  MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPI

Query:  RNVTPVCREE-DGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
        RNVTPVC+++ +  IG     PGSPRPGWTGFR+KYLL+KTWRP+LA IPE
Subjt:  RNVTPVCREE-DGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66890.1 FUNCTIONS IN: molecular_function unknown1.3e-1542.59Show/hide
Query:  SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSAR-RSPRRRALPD--KKRDDHKDLSRSNTLKDLFVSSPPYDESDG---------
        SL KFKLL THC  VA+SPT     SP++HLRRRK TLR+LLTR+S R R P  +   D  KK D    +  S  L DLFVSSPP++ES G         
Subjt:  SLLKFKLLPTHCG-VAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSAR-RSPRRRALPD--KKRDDHKDLSRSNTLKDLFVSSPPYDESDG---------

Query:  -EINETVAAAPIRNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
         E+ E     P+  V+      +          GS RP  +      LLR++WRP+L +IPE
Subjt:  -EINETVAAAPIRNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE

AT1G68430.1 unknown protein4.4e-1642.5Show/hide
Query:  MASLLKFKLLPTHCGV-AQSPTL--SPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESD-------GE
        MA+L +FK L T CGV AQSPT   SPRTSPLV LRR+KTTL+MLL    +  SP RR         HKD++    LKDLFVSS   +E         G+
Subjt:  MASLLKFKLLPTHCGV-AQSPTL--SPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESD-------GE

Query:  INETVAAAPIRNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
          E V AA    +    R                 P W GF  K LL++ WRP L +I E
Subjt:  INETVAAAPIRNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE

AT5G16200.1 50S ribosomal protein-related3.0e-0936.47Show/hide
Query:  MASLLKFKLLPTH----CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS-ARRSPRRRALPD----------KKRDDHKDLSRSNTLKDLFVS--SPP
        ++ L KFKL   H       A SPT+SP  SP+ +LRRRK TLRML  ++S +RR   R+ L +          KKR +H+   R   L++L V+  SPP
Subjt:  MASLLKFKLLPTH----CGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNS-ARRSPRRRALPD----------KKRDDHKDLSRSNTLKDLFVS--SPP

Query:  Y---DESDGEINETVAAAPIRNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE
        Y   ++ DG   E    +P+ NVT      +G+    +            FR + +LRK WRP+L SIPE
Subjt:  Y---DESDGEINETVAAAPIRNVTPVCREEDGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCACTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAAC
CACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCTCGCCCCGTCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTGTCTCGGAGCAACACGT
TGAAGGATTTGTTCGTGTCATCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCAGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAG
GATGGTGAGATTGGACCGACCAGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGACACAAATACTTGCTCCGGAAAACGTGGCGGCCACTGCTTGCCAG
CATCCCCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCACTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAAC
CACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCTCGCCCCGTCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTGTCTCGGAGCAACACGT
TGAAGGATTTGTTCGTGTCATCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCAGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAG
GATGGTGAGATTGGACCGACCAGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGACACAAATACTTGCTCCGGAAAACGTGGCGGCCACTGCTTGCCAG
CATCCCCGAGTAA
Protein sequenceShow/hide protein sequence
MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVCREE
DGEIGPTSWHPGSPRPGWTGFRHKYLLRKTWRPLLASIPE