; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G021940 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G021940
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionextensin
Genome locationCmo_Chr04:16255535..16255951
RNA-Seq ExpressionCmoCh04G021940
SyntenyCmoCh04G021940
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601837.1 hypothetical protein SDJN03_07070, partial [Cucurbita argyrosperma subsp. sororia]3.5e-6297.83Show/hide
Query:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
        MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
Subjt:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG

Query:  PPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM
        PPGDLYPIDQSYNAA+RRLVS AASAVVGLAV GVLMM
Subjt:  PPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM

KAG7032543.1 hypothetical protein SDJN02_06592, partial [Cucurbita argyrosperma subsp. argyrosperma]5.4e-6399.28Show/hide
Query:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
        MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
Subjt:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG

Query:  PPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM
        PPGDLYPIDQSYNAASRRLVS AASAVVGLAVAGVLMM
Subjt:  PPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM

XP_022953268.1 extensin [Cucurbita moschata]1.4e-63100Show/hide
Query:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
        MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
Subjt:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG

Query:  PPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM
        PPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM
Subjt:  PPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM

XP_022989990.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]1.3e-5689.51Show/hide
Query:  MLPFNSLLFLALLLLISPSSSSAAVRRLDD-----TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNF
        MLPFNSLLFL LLLLISPSSSSAAVRRLDD     TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVV+YYS PPPPKKDHKN+DCPPPP+PNF
Subjt:  MLPFNSLLFLALLLLISPSSSSAAVRRLDD-----TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNF

Query:  MYITGPPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM
        MYITGPPGDLYPIDQ+YNAA+RRLVS AASAV+GLAVAGVLM+
Subjt:  MYITGPPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM

XP_023520933.1 extensin [Cucurbita pepo subsp. pepo]1.8e-5893.48Show/hide
Query:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPS-PPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYIT
        MLPFNSLLFL LLLLISPSSSSAAVRRLDDTP DPTVKCSPCEQNPPS PPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKN+DCPPPP+PNFMYIT
Subjt:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPS-PPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYIT

Query:  GPPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLM
        GPPGDLYPIDQ+YNAA+RRLVS AASAV+GLAVAGVLM
Subjt:  GPPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLM

TrEMBL top hitse value%identityAlignment
A0A0A0KPJ1 Uncharacterized protein1.5e-3971.83Show/hide
Query:  MLPFNSLLFLALLLLISPSS--SSAAVRRLDD--TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFM
        MLP   LLFL  LLLISPSS  +S  VRRLDD  TP DP VKC+PCEQNPPSPPPP VYPSPPPPSPPPPDVV YYSPPPP KK+ K+ +CPPPP+P+FM
Subjt:  MLPFNSLLFLALLLLISPSS--SSAAVRRLDD--TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFM

Query:  YITGPPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM
        YITGPPGDLYPIDQ YNAA RR    +A+ VVG+ +AG+L++
Subjt:  YITGPPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM

A0A1S3CT22 extensin-like3.7e-4173.94Show/hide
Query:  MLPFNSLLFLALLLLISPSS--SSAAVRRLDD--TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFM
        MLP   LLFL  LLLISPSS  +SA VRRLDD  TP DP VKC+PCEQNPPSPPPP VYPSPPPPSPPPPDVV YYSPPPP KK+ KN +CPPPP+P+FM
Subjt:  MLPFNSLLFLALLLLISPSS--SSAAVRRLDD--TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFM

Query:  YITGPPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM
        YITGPPGDLYPIDQ+YNAA RR   +AA+A VG+ +AG+L++
Subjt:  YITGPPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM

A0A6J1DDL2 acrosin3.4e-3969.59Show/hide
Query:  MLPFNSLLFLALLLLISPS---SSSAAVRRLDDTPA------DPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPP
        MLP  SLLFL LLLLISPS   ++SAA R LD+ PA      DPTVKC+PC+QNPPSPPPPP+YPSPPPPSPPPPDV+ YYS PPPPKK   ND+CPPPP
Subjt:  MLPFNSLLFLALLLLISPS---SSSAAVRRLDDTPA------DPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPP

Query:  -APNFMYITGPPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM
          P+F YITGPPGDLYPIDQ YNAA+R L S AA+AVVGL + G+ ++
Subjt:  -APNFMYITGPPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM

A0A6J1GMY1 extensin6.9e-64100Show/hide
Query:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
        MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG
Subjt:  MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITG

Query:  PPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM
        PPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM
Subjt:  PPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM

A0A6J1JNW0 leucine-rich repeat extensin-like protein 36.2e-5789.51Show/hide
Query:  MLPFNSLLFLALLLLISPSSSSAAVRRLDD-----TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNF
        MLPFNSLLFL LLLLISPSSSSAAVRRLDD     TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVV+YYS PPPPKKDHKN+DCPPPP+PNF
Subjt:  MLPFNSLLFLALLLLISPSSSSAAVRRLDD-----TPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNF

Query:  MYITGPPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM
        MYITGPPGDLYPIDQ+YNAA+RRLVS AASAV+GLAVAGVLM+
Subjt:  MYITGPPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLMM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02405.1 proline-rich family protein3.7e-0944.44Show/hide
Query:  LFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQN----PPSPPPPPVYPSPPPPSPPPP-DVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITGPP
        + +A+++L SP   +A     +D+ A+  V C PC QN    PPSPPPP   PSPPPPSPPPP       SP PPP         PPPP PN+++ T PP
Subjt:  LFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQN----PPSPPPPPVYPSPPPPSPPPP-DVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITGPP

Query:  GDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLM
        GDLYPI+  Y AA    V+  + +V+ L V GV++
Subjt:  GDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVLM

AT1G23040.1 hydroxyproline-rich glycoprotein family protein6.4e-1449.28Show/hide
Query:  SLLFLALL---LLISPSSSSAA---VRRLDDTPADPTVKCSP-CEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYI
        +++ +ALL    LI+ SSSS A    R+LD+   DP +KCSP C QNPP P PPP  PSPPPP+ PPP  +    PPPPPKK   +  CPPPP  NF+YI
Subjt:  SLLFLALL---LLISPSSSSAA---VRRLDDTPADPTVKCSP-CEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYI

Query:  TGPPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVL
        TGPPG+LYP+D+ + AA+ +  S     + GL   G++
Subjt:  TGPPGDLYPIDQSYNAASRRLVSTAASAVVGLAVAGVL

AT1G70990.1 proline-rich family protein3.0e-1143.8Show/hide
Query:  SLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPS---PPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITGPP
        +++FL   ++I+ S SS   R+L++ P    +KC+PC QN P P PPP  PSPPPPS   PPPP       PP PPKK +    CPPPP+  ++Y+TGPP
Subjt:  SLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPS---PPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITGPP

Query:  GDLYPIDQSYNAA-SRRLVSTAASAVVGLAVAGVLMM
        G+LYPIDQ + AA ++       S ++   V   LM+
Subjt:  GDLYPIDQSYNAA-SRRLVSTAASAVVGLAVAGVLMM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCCTTTCAATTCTCTCCTCTTTCTCGCCCTCCTCCTTCTAATCTCCCCCTCCTCCTCCTCCGCCGCCGTTCGCCGCCTCGACGACACCCCCGCCGACCCCACCGT
CAAGTGCTCCCCATGTGAACAAAACCCCCCATCTCCTCCTCCTCCACCGGTCTACCCCTCCCCTCCGCCGCCCTCTCCTCCACCGCCGGACGTTGTCATCTACTACTCTC
CTCCTCCCCCCCCTAAGAAGGATCACAAGAACGACGACTGCCCACCGCCGCCGGCTCCCAACTTCATGTACATAACCGGCCCTCCCGGCGACCTCTACCCCATCGACCAA
AGTTATAACGCTGCCTCCCGGAGACTCGTCTCCACCGCAGCCTCCGCCGTGGTTGGGTTGGCTGTTGCTGGGGTTCTGATGATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCCTTTCAATTCTCTCCTCTTTCTCGCCCTCCTCCTTCTAATCTCCCCCTCCTCCTCCTCCGCCGCCGTTCGCCGCCTCGACGACACCCCCGCCGACCCCACCGT
CAAGTGCTCCCCATGTGAACAAAACCCCCCATCTCCTCCTCCTCCACCGGTCTACCCCTCCCCTCCGCCGCCCTCTCCTCCACCGCCGGACGTTGTCATCTACTACTCTC
CTCCTCCCCCCCCTAAGAAGGATCACAAGAACGACGACTGCCCACCGCCGCCGGCTCCCAACTTCATGTACATAACCGGCCCTCCCGGCGACCTCTACCCCATCGACCAA
AGTTATAACGCTGCCTCCCGGAGACTCGTCTCCACCGCAGCCTCCGCCGTGGTTGGGTTGGCTGTTGCTGGGGTTCTGATGATGTAA
Protein sequenceShow/hide protein sequence
MLPFNSLLFLALLLLISPSSSSAAVRRLDDTPADPTVKCSPCEQNPPSPPPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHKNDDCPPPPAPNFMYITGPPGDLYPIDQ
SYNAASRRLVSTAASAVVGLAVAGVLMM