; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G022170 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G022170
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionHMG-Y-related protein A
Genome locationCmo_Chr04:16533783..16534844
RNA-Seq ExpressionCmoCh04G022170
SyntenyCmoCh04G022170
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016584 - nucleosome positioning (biological process)
GO:0030261 - chromosome condensation (biological process)
GO:0045910 - negative regulation of DNA recombination (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
GO:0031492 - nucleosomal DNA binding (molecular function)
InterPro domainsIPR000116 - High mobility group protein HMGA
IPR005818 - Linker histone H1/H5, domain H15
IPR017956 - AT hook, DNA-binding motif
IPR031059 - High mobility group protein HMGA, plant
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150116.1 HMG-Y-related protein A [Cucumis sativus]5.3e-9092.47Show/hide
Query:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
        MAT DQLNNPPQPPPPAPSLPHYPEMIM+AID+LNDKNGVSKS +TKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRP
Subjt:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSV-PVASPPRGRGRPPKIKPAVAPVGC
        PKPKVPLPPGTVVSPPRPRGRPPK +DPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTS  PVA PPRGRGRPPK+KPAVAPVGC
Subjt:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSV-PVASPPRGRGRPPKIKPAVAPVGC

XP_008466945.1 PREDICTED: HMG-Y-related protein A [Cucumis melo]4.1e-9093.01Show/hide
Query:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
        MAT DQLNNPPQPPPPAPSLPHYPEMIM+AID+LNDKNGVSKS +TKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSV-PVASPPRGRGRPPKIKPAVAPVGC
        PKPKVPLPPGTVVSPPRPRGRPPK +DPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTS  PVA PPRGRGRPPK+KPAVAPVGC
Subjt:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSV-PVASPPRGRGRPPKIKPAVAPVGC

XP_022953026.1 HMG-Y-related protein B-like [Cucurbita moschata]7.7e-97100Show/hide
Query:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
        MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC
        PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC
Subjt:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC

XP_023545599.1 HMG-Y-related protein B-like [Cucurbita pepo subsp. pepo]5.0e-9699.46Show/hide
Query:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
        MATADQ NNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC
        PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC
Subjt:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC

XP_038906720.1 HMG-Y-related protein A-like [Benincasa hispida]5.3e-9091.89Show/hide
Query:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
        MAT DQLNNPPQPPPPAPSLPHYPEMIM+AI++LNDKNGVSKS +TKQIESTYGDLPPAF+TLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC
        PKPKVPLPPGTVVSPPRPRGRPPK +DPFAPISQPKKK + GSGRPRGRPPKYPKPAPTS PVA PPRGRGRPPK+KPAVAPVGC
Subjt:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC

TrEMBL top hitse value%identityAlignment
A0A0A0KPG4 H15 domain-containing protein2.6e-9092.47Show/hide
Query:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
        MAT DQLNNPPQPPPPAPSLPHYPEMIM+AID+LNDKNGVSKS +TKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRP
Subjt:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSV-PVASPPRGRGRPPKIKPAVAPVGC
        PKPKVPLPPGTVVSPPRPRGRPPK +DPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTS  PVA PPRGRGRPPK+KPAVAPVGC
Subjt:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSV-PVASPPRGRGRPPKIKPAVAPVGC

A0A1S3CSD8 HMG-Y-related protein A2.0e-9093.01Show/hide
Query:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
        MAT DQLNNPPQPPPPAPSLPHYPEMIM+AID+LNDKNGVSKS +TKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSV-PVASPPRGRGRPPKIKPAVAPVGC
        PKPKVPLPPGTVVSPPRPRGRPPK +DPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTS  PVA PPRGRGRPPK+KPAVAPVGC
Subjt:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSV-PVASPPRGRGRPPKIKPAVAPVGC

A0A5D3E3W3 HMG-Y-related protein A2.0e-9093.01Show/hide
Query:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
        MAT DQLNNPPQPPPPAPSLPHYPEMIM+AID+LNDKNGVSKS +TKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSV-PVASPPRGRGRPPKIKPAVAPVGC
        PKPKVPLPPGTVVSPPRPRGRPPK +DPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTS  PVA PPRGRGRPPK+KPAVAPVGC
Subjt:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSV-PVASPPRGRGRPPKIKPAVAPVGC

A0A6J1GLV6 HMG-Y-related protein B-like3.7e-97100Show/hide
Query:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
        MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC
        PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC
Subjt:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC

A0A6J1JSA2 HMG-Y-related protein B-like3.7e-97100Show/hide
Query:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
        MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
Subjt:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC
        PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC
Subjt:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC

SwissProt top hitse value%identityAlignment
Q00423 HMG-Y-related protein A4.9e-4659.78Show/hide
Query:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP
        MAT +++N P        SLP YPEMI+  ++ALN+ NG +KS ++K IE+TYG+LP A  T+L  HL+ MK +G+L F +NNYMK DPNAPPKRGRGRP
Subjt:  MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRP

Query:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVA-SPPRGRGRPPKIKPAVAPV
        PKPK PLPPGTVVSPPRPRGRPPK  DP AP   PK K + GSGRPRGRP K P+    + P A S  R RGRPPK+KP +  V
Subjt:  PKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVA-SPPRGRGRPPKIKPAVAPV

Q10370 HMG-Y-related protein B (Fragment)1.7e-3861.84Show/hide
Query:  ALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPI
        ALN+ +G +KS ++K IE+TYG+LP    T+L  HL+ MK++G+L F +NNYMK DPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPK  DP AP 
Subjt:  ALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPI

Query:  SQPKKKPSSGSGRPRGRPPKYPK-PAPTSVPVASPPRGRGRPPKIKPAVAPV
          PK K +  +GRPRGRP K  + PA  S    S  R RGRPPK+KP +  V
Subjt:  SQPKKKPSSGSGRPRGRPPKYPK-PAPTSVPVASPPRGRGRPPKIKPAVAPV

Q43386 HMG-Y-related protein A5.1e-4357.14Show/hide
Query:  PAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VP
        P+ SLP YP+MIM AI++LNDKNG +K+ + K IEST   LPP+  TLL++HL+ MK+TGQL+ VKNNYMKPDP+APPKRGRGRPPK K           
Subjt:  PAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VP

Query:  LPPGTVVS--PPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPP-------RGRGRPPKIKP-AVAPVGC
        +   TVVS  PPR RGRPPK +DP  P   P++K  +GSGRPRGRPPK P+    +V    P        RGRGRPPK+KP  VAPVGC
Subjt:  LPPGTVVS--PPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPP-------RGRGRPPKIKP-AVAPVGC

Q9FYS5 HMG-Y-related protein A6.9e-3250Show/hide
Query:  PAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPD-PNAPPKRGRGRPPK---PKVPLP-PG
        P+P +P YPEMI++AI+ L+DK+G +KS ++K IE  YG LPPA  +LLT HL  MK++G+L+F+KNNY +   P+APPKRGRGRPPK   P  P P P 
Subjt:  PAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPD-PNAPPKRGRGRPPK---PKVPLP-PG

Query:  TVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPK----------YPKPAPTSVPVASPP--RGRGRPPKIKPAV
        +  S  R RGRPPK++   +P+    K+ ++G  +PRGRPPK           P PAP      S P  RGRGRPPK++PAV
Subjt:  TVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPK----------YPKPAPTSVPVASPP--RGRGRPPKIKPAV

Arabidopsis top hitse value%identityAlignment
AT1G14900.1 high mobility group A3.6e-4457.14Show/hide
Query:  PAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VP
        P+ SLP YP+MIM AI++LNDKNG +K+ + K IEST   LPP+  TLL++HL+ MK+TGQL+ VKNNYMKPDP+APPKRGRGRPPK K           
Subjt:  PAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPK---------VP

Query:  LPPGTVVS--PPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPP-------RGRGRPPKIKP-AVAPVGC
        +   TVVS  PPR RGRPPK +DP  P   P++K  +GSGRPRGRPPK P+    +V    P        RGRGRPPK+KP  VAPVGC
Subjt:  LPPGTVVS--PPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPP-------RGRGRPPKIKP-AVAPVGC

AT1G48620.1 high mobility group A52.0e-1032.47Show/hide
Query:  ATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNY-MKPDPNAPP-------
        A   Q    P PP P+ S P Y +MI +AI ALN+ +G SK  +++ IE  Y  +P A   LLTHHL  +K +G L+ VK +Y +   P  PP       
Subjt:  ATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNY-MKPDPNAPP-------

Query:  -----------------------------KRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKK----------KPSSGSGRPRGRPPKYP
                                     KRGRGRPPK K    P  V   P   G+    +    P+S+P++          +P     RP GRP K  
Subjt:  -----------------------------KRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKSRDPFAPISQPKK----------KPSSGSGRPRGRPPKYP

Query:  KPAPTSVPVASPPRG------RGRPPKIKPA
          +PT  P AS   G      RGRPP  + A
Subjt:  KPAPTSVPVASPPRG------RGRPPKIKPA

AT3G18035.1 winged-helix DNA-binding transcription factor family protein1.1e-0833.99Show/hide
Query:  PQPP----PPAPSLPH--YPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPP--------KRG
        PQP      P  S+PH  Y EMI +AI ALN+ +G SK  +++ IE  Y  L  A   LLTHHL  +K +G L  VK +Y     + PP           
Subjt:  PQPP----PPAPSLPH--YPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPP--------KRG

Query:  RGRP-PKPKV-------PLPPGTVVSP-PRPRGRPPKSRDPFAPISQPKKKPSS---GSGRPRGRPPKYPKPAPTSVPVA-SPPRGRGRPPK---IKPAV
        +G   P+ ++       P+  G+   P  R RGRPPK +    P    +  P++    +G+P     +   P P   PV  S  RG GRP K     PA 
Subjt:  RGRP-PKPKV-------PLPPGTVVSP-PRPRGRPPKSRDPFAPISQPKKKPSS---GSGRPRGRPPKYPKPAPTSVPVA-SPPRGRGRPPK---IKPAV

Query:  APV
        AP+
Subjt:  APV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACCGCCGATCAACTCAACAACCCACCGCAGCCACCTCCTCCGGCCCCCTCACTCCCTCACTACCCCGAGATGATTATGTCAGCGATCGACGCTCTCAACGACAA
AAACGGAGTGAGCAAATCGGTGCTTACGAAGCAGATCGAGTCCACCTACGGCGATCTGCCCCCAGCTTTCACTACGCTCCTTACCCATCACTTGGACGTCATGAAGCAAA
CCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAACCCGATCCCAACGCGCCGCCGAAGCGTGGCCGTGGTCGTCCTCCCAAGCCTAAAGTCCCTCTCCCGCCGGGC
ACCGTCGTATCTCCTCCACGCCCACGTGGCCGCCCACCGAAATCCAGAGATCCATTCGCTCCCATTTCGCAGCCCAAGAAGAAGCCCTCCTCGGGAAGTGGAAGGCCACG
TGGCCGCCCTCCGAAGTACCCAAAGCCAGCGCCCACGTCGGTTCCGGTCGCTAGTCCGCCCCGAGGTAGAGGGCGGCCGCCGAAGATTAAGCCGGCCGTCGCCCCCGTTG
GGTGCTGA
mRNA sequenceShow/hide mRNA sequence
GATCCCCTCCTCTACCTATTTCCCCTTTTTAAATCCTCTCCTTTCCCTGTCCTCCATCGTCTTCTTCCCACCAAACCTACAGTGTTTCTCTCTCCTCTTCCTTTTTCTCT
ATCCATAATCCCACCGTCGACACCATGGCCACCGCCGATCAACTCAACAACCCACCGCAGCCACCTCCTCCGGCCCCCTCACTCCCTCACTACCCCGAGATGATTATGTC
AGCGATCGACGCTCTCAACGACAAAAACGGAGTGAGCAAATCGGTGCTTACGAAGCAGATCGAGTCCACCTACGGCGATCTGCCCCCAGCTTTCACTACGCTCCTTACCC
ATCACTTGGACGTCATGAAGCAAACCGGCCAACTCCTCTTCGTCAAAAACAACTACATGAAACCCGATCCCAACGCGCCGCCGAAGCGTGGCCGTGGTCGTCCTCCCAAG
CCTAAAGTCCCTCTCCCGCCGGGCACCGTCGTATCTCCTCCACGCCCACGTGGCCGCCCACCGAAATCCAGAGATCCATTCGCTCCCATTTCGCAGCCCAAGAAGAAGCC
CTCCTCGGGAAGTGGAAGGCCACGTGGCCGCCCTCCGAAGTACCCAAAGCCAGCGCCCACGTCGGTTCCGGTCGCTAGTCCGCCCCGAGGTAGAGGGCGGCCGCCGAAGA
TTAAGCCGGCCGTCGCCCCCGTTGGGTGCTGAGTGGAGATTAAAAAAAACAGAGGATGAGAGAGAGAGATAGATAGAGAGAGAAAAAGATGAATTTGTTTAGGTTGTGTT
TAGCTGGTCGATCTCTCCGGAAATTGCTCTGTTTTTTTATTTTTTTTTTCCTAATTTTAAAAATTATTAATTTTTTTCTTTTTTTTCTTCTGTGCATTACGTGGCGGGTG
CTGAATGGCTGTAATTCAGGGTGGGGGTTAGGAGACTGTAATTGCATGTAAGTTATTTTAACGACTGTTTAGGCTTTTTTTTTTTTCCTCCTCTTTCCGC
Protein sequenceShow/hide protein sequence
MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPG
TVVSPPRPRGRPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAVAPVGC