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CmoCh04G022860 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G022860
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionIleal sodium/bile acid cotransporter, putative
Genome locationCmo_Chr04:17015194..17015694
RNA-Seq ExpressionCmoCh04G022860
SyntenyCmoCh04G022860
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050246.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa]1.1e-4167.52Show/hide
Query:  MNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT--NLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVF
        MNELYSFI A+N RNP I+S           LPICI M+   P NS +T  N+GK ILGLTFQAVLALFI+SP S PPLLTHLF AAVLISF VSFAG+F
Subjt:  MNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT--NLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVF

Query:  LQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK
        LQN FPRIALLF K+ ALIAA+GV I+AS LL  Q F+WISWL   FSL+AFVLSF+
Subjt:  LQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK

KAG6579137.1 hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sororia]6.6e-3151.79Show/hide
Query:  MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT--NLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVL
        M S  + +S+DMN+      A +G  P            +  +P     +  PPP+S QT  NLGKI+ GLTFQAVLALFIS PTS PPLL H+F AA+L
Subjt:  MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT--NLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVL

Query:  ISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK
        ISF +S A +FLQ A+PRIAL  GK+ AL+AA+G   I S LL  Q FSWI WL C F+L+AF+LSFK
Subjt:  ISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK

KGN49803.1 hypothetical protein Csa_004681 [Cucumis sativus]3.0e-4465.48Show/hide
Query:  MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT--NLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVL
        MES S+QIS+DMN LYS I ++N RNP I+           GLPICI M+ + P NS +T  N+G  ILGLTFQAVLALFI+S TS PPLLTHLFGAAVL
Subjt:  MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT--NLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVL

Query:  ISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK
        ISF VSF GVFLQ+ FPRIALLF K+ ALIAA+GV I+AS LL  Q F+WISWL C FSL+AF+LSF+
Subjt:  ISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK

KGN49808.1 hypothetical protein Csa_004650 [Cucumis sativus]1.4e-3356.55Show/hide
Query:  MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT-NLGKIILGLTFQAVLALFISS-PTSYPPLLTHLFGAAVL
        M S S Q SLDM+   SFI  ++ RN G+        T S  LP+ IRM+ SP   +  +  LGKIIL L+FQAVLALFISS PTS PPLL H F AAV 
Subjt:  MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT-NLGKIILGLTFQAVLALFISS-PTSYPPLLTHLFGAAVL

Query:  ISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK
        ISF VSFA +FL N+FPR A LF K+ AL +A GV  IASFLL  Q F+WI W+ C FS+I F LSFK
Subjt:  ISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK

XP_022146444.1 uncharacterized protein LOC111015658 [Momordica charantia]3.8e-3168.8Show/hide
Query:  MESCSEQISLDMNELYSFINAMNGRNPGISSITW--GTSTSSAGLPICIRMKNSPPPNSPQTNLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVL
        M S  +Q S+DMN L SFI A+N RN GISS TW  GTST S  LPICIRM+  PP  S Q +LGK ILGLTFQAVLALFIS P+S P L T LFGAAVL
Subjt:  MESCSEQISLDMNELYSFINAMNGRNPGISSITW--GTSTSSAGLPICIRMKNSPPPNSPQTNLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVL

Query:  ISFVVSFAGVFLQNAFPRIALLFGK
        ISF VSFAG+FLQ A+PR+ALLF K
Subjt:  ISFVVSFAGVFLQNAFPRIALLFGK

TrEMBL top hitse value%identityAlignment
A0A0A0KJN8 Uncharacterized protein1.5e-4465.48Show/hide
Query:  MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT--NLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVL
        MES S+QIS+DMN LYS I ++N RNP I+           GLPICI M+ + P NS +T  N+G  ILGLTFQAVLALFI+S TS PPLLTHLFGAAVL
Subjt:  MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT--NLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVL

Query:  ISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK
        ISF VSF GVFLQ+ FPRIALLF K+ ALIAA+GV I+AS LL  Q F+WISWL C FSL+AF+LSF+
Subjt:  ISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK

A0A0A0KJP2 Uncharacterized protein6.8e-3456.55Show/hide
Query:  MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT-NLGKIILGLTFQAVLALFISS-PTSYPPLLTHLFGAAVL
        M S S Q SLDM+   SFI  ++ RN G+        T S  LP+ IRM+ SP   +  +  LGKIIL L+FQAVLALFISS PTS PPLL H F AAV 
Subjt:  MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT-NLGKIILGLTFQAVLALFISS-PTSYPPLLTHLFGAAVL

Query:  ISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK
        ISF VSFA +FL N+FPR A LF K+ AL +A GV  IASFLL  Q F+WI W+ C FS+I F LSFK
Subjt:  ISFVVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK

A0A5A7U7U1 Putative Ileal sodium/bile acid cotransporter5.2e-4267.52Show/hide
Query:  MNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT--NLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVF
        MNELYSFI A+N RNP I+S           LPICI M+   P NS +T  N+GK ILGLTFQAVLALFI+SP S PPLLTHLF AAVLISF VSFAG+F
Subjt:  MNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQT--NLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVF

Query:  LQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK
        LQN FPRIALLF K+ ALIAA+GV I+AS LL  Q F+WISWL   FSL+AFVLSF+
Subjt:  LQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK

A0A5D3BEH8 Putative Ileal sodium/bile acid cotransporter1.7e-2951.52Show/hide
Query:  ESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQTNLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVLISF
        E+   +ISLDMNELYSFI A+  RNPGISS TWGT+ S   LPI I+M+   P NSPQ   G   +   FQA+L LF++ P S PP L+ L G  +L +F
Subjt:  ESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQTNLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVLISF

Query:  VVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK
        V SF GV LQ  FP+IA L     AL+AA+GV I+ S LL   + +WI WL C   L AF+ SFK
Subjt:  VVSFAGVFLQNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK

A0A6J1CY58 uncharacterized protein LOC1110156581.9e-3168.8Show/hide
Query:  MESCSEQISLDMNELYSFINAMNGRNPGISSITW--GTSTSSAGLPICIRMKNSPPPNSPQTNLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVL
        M S  +Q S+DMN L SFI A+N RN GISS TW  GTST S  LPICIRM+  PP  S Q +LGK ILGLTFQAVLALFIS P+S P L T LFGAAVL
Subjt:  MESCSEQISLDMNELYSFINAMNGRNPGISSITW--GTSTSSAGLPICIRMKNSPPPNSPQTNLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVL

Query:  ISFVVSFAGVFLQNAFPRIALLFGK
        ISF VSFAG+FLQ A+PR+ALLF K
Subjt:  ISFVVSFAGVFLQNAFPRIALLFGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCATGTTCAGAGCAAATCTCCCTAGATATGAATGAACTATATTCCTTCATCAATGCAATGAATGGAAGAAATCCAGGAATTAGTAGTATTACCTGGGGAACCTC
CACATCATCGGCTGGCCTTCCAATTTGCATCAGAATGAAGAACTCTCCACCACCCAACAGCCCTCAGACTAATCTTGGGAAGATAATTCTTGGCCTTACTTTTCAGGCAG
TTTTGGCCTTGTTCATCAGTTCACCCACTTCATATCCTCCACTTTTGACACATCTCTTTGGTGCTGCGGTGTTGATAAGCTTCGTAGTTTCATTTGCTGGAGTTTTCCTT
CAAAATGCATTCCCGAGAATTGCACTTTTGTTTGGAAAGCTCAGTGCTCTTATCGCTGCAATGGGTGTGTGGATCATAGCAAGTTTTCTTCTAACTCGTCAGATTTTCTC
CTGGATCTCTTGGCTGCCATGTGCCTTCTCCTTGATAGCCTTTGTTCTATCATTCAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCATGTTCAGAGCAAATCTCCCTAGATATGAATGAACTATATTCCTTCATCAATGCAATGAATGGAAGAAATCCAGGAATTAGTAGTATTACCTGGGGAACCTC
CACATCATCGGCTGGCCTTCCAATTTGCATCAGAATGAAGAACTCTCCACCACCCAACAGCCCTCAGACTAATCTTGGGAAGATAATTCTTGGCCTTACTTTTCAGGCAG
TTTTGGCCTTGTTCATCAGTTCACCCACTTCATATCCTCCACTTTTGACACATCTCTTTGGTGCTGCGGTGTTGATAAGCTTCGTAGTTTCATTTGCTGGAGTTTTCCTT
CAAAATGCATTCCCGAGAATTGCACTTTTGTTTGGAAAGCTCAGTGCTCTTATCGCTGCAATGGGTGTGTGGATCATAGCAAGTTTTCTTCTAACTCGTCAGATTTTCTC
CTGGATCTCTTGGCTGCCATGTGCCTTCTCCTTGATAGCCTTTGTTCTATCATTCAAGTAA
Protein sequenceShow/hide protein sequence
MESCSEQISLDMNELYSFINAMNGRNPGISSITWGTSTSSAGLPICIRMKNSPPPNSPQTNLGKIILGLTFQAVLALFISSPTSYPPLLTHLFGAAVLISFVVSFAGVFL
QNAFPRIALLFGKLSALIAAMGVWIIASFLLTRQIFSWISWLPCAFSLIAFVLSFK