; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G022960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G022960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionflowering time control protein FY
Genome locationCmo_Chr04:17074867..17079902
RNA-Seq ExpressionCmoCh04G022960
SyntenyCmoCh04G022960
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601938.1 Flowering time control protein FY, partial [Cucurbita argyrosperma subsp. sororia]3.4e-12195Show/hide
Query:  MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ
        MYGDPQQFQ   QQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRH SGPA PPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ
Subjt:  MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ

Query:  RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW
        RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVL + T    GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW
Subjt:  RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW

Query:  SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
        SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
Subjt:  SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL

KAG7032634.1 Flowering time control protein FY [Cucurbita argyrosperma subsp. argyrosperma]2.5e-12495.83Show/hide
Query:  MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ
        MYGDPQQFQ   QQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ
Subjt:  MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ

Query:  RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW
        RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVL + T    GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW
Subjt:  RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW

Query:  SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
        SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
Subjt:  SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL

XP_022964009.1 flowering time control protein FY-like isoform X1 [Cucurbita moschata]2.9e-12897.08Show/hide
Query:  MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ
        MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ
Subjt:  MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ

Query:  RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW
        RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVL + T    GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW
Subjt:  RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW

Query:  SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
        SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
Subjt:  SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL

XP_022990681.1 LOW QUALITY PROTEIN: flowering time control protein FY-like [Cucurbita maxima]6.6e-12595.42Show/hide
Query:  MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ
        MYGDPQQFQ H QQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ
Subjt:  MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ

Query:  RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW
        RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVL + T    GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW
Subjt:  RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW

Query:  SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
        SHNDNWMVSGD+GGSIKYWQNNMNNVKANKSA KESVRDL
Subjt:  SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL

XP_023548971.1 flowering time control protein FY-like isoform X1 [Cucurbita pepo subsp. pepo]2.1e-12696.25Show/hide
Query:  MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ
        MYGDPQQFQ H QQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ
Subjt:  MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ

Query:  RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW
        RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVL + T    GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW
Subjt:  RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW

Query:  SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
        SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
Subjt:  SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL

TrEMBL top hitse value%identityAlignment
A0A1S3CQ38 flowering time control protein FY4.2e-11791.46Show/hide
Query:  MYGDPQQFQHHHQQ-PNQHPHGGDF-----PRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYM
        MYGDPQQFQ  HQQ PNQHP GGDF     P GPPMMRQPSASSTTLAPEFQ HHHPRHPSGPA PPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYM
Subjt:  MYGDPQQFQHHHQQ-PNQHPHGGDF-----PRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYM

Query:  QLRMWQRDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQA
        QLRMWQRDSK+RTVLQSTPAAAIDMLPPAA SDNPSTSFAAKFVHTSINKNRCSINRVL + T    GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQA
Subjt:  QLRMWQRDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQA

Query:  IRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
        IRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
Subjt:  IRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL

A0A5A7U778 Flowering time control protein FY1.2e-11691.06Show/hide
Query:  MYGDPQQFQHHHQQ-PNQHPHGGDF-----PRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYM
        MYGDPQQFQ  HQQ PNQHP GGDF     P GPPMMRQPSASSTTLAPEFQ HHHPRHPSGPA PPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVR+M
Subjt:  MYGDPQQFQHHHQQ-PNQHPHGGDF-----PRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYM

Query:  QLRMWQRDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQA
        QLRMWQRDSK+RTVLQSTPAAAIDMLPPAA SDNPSTSFAAKFVHTSINKNRCSINRVL + T    GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQA
Subjt:  QLRMWQRDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQA

Query:  IRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
        IRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
Subjt:  IRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL

A0A6J1FFG6 flowering time control protein FY-like isoform X14.6e-11689.52Show/hide
Query:  MYGDPQQF---QHHHQQPNQHPHGGDFPR-----GPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVR
        MYGDPQQF   QH  QQPNQHP GGDFPR     GPPMMRQPSASSTTLAPEFQ HHHPRHPSG  PPPPYEAHGDSF AKRMRKLTQRRAVDYTSTVVR
Subjt:  MYGDPQQF---QHHHQQPNQHPHGGDFPR-----GPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVR

Query:  YMQLRMWQRDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHD
        YMQ+RMWQRDSK+RTVLQSTPAA+IDMLPPAA SDNPSTSFAAKFVHTSINKNRCSINRVL + T    GRRLITGSQSGEFTLWNGQSFNFEMILQAHD
Subjt:  YMQLRMWQRDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHD

Query:  QAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
        QAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
Subjt:  QAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL

A0A6J1HLV3 flowering time control protein FY-like isoform X11.4e-12897.08Show/hide
Query:  MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ
        MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ
Subjt:  MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ

Query:  RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW
        RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVL + T    GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW
Subjt:  RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW

Query:  SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
        SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
Subjt:  SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL

A0A6J1JNM4 LOW QUALITY PROTEIN: flowering time control protein FY-like3.2e-12595.42Show/hide
Query:  MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ
        MYGDPQQFQ H QQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ
Subjt:  MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQ

Query:  RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW
        RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVL + T    GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW
Subjt:  RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVW

Query:  SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
        SHNDNWMVSGD+GGSIKYWQNNMNNVKANKSA KESVRDL
Subjt:  SHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL

SwissProt top hitse value%identityAlignment
Q6NLV4 Flowering time control protein FY1.6e-8473.33Show/hide
Query:  GGDFPRG-----PPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQRDSKERTVLQSTPAA
        GGD  RG     PPMMRQ SASST + P++       HPSG     P++ + DSF AKRMRK TQRRAVDYTSTVVRY+Q R WQRDS++RT LQ TPAA
Subjt:  GGDFPRG-----PPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQRDSKERTVLQSTPAA

Query:  AIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGS
        A+DMLP  A SDNPSTSFAAKFVH S+NKNRCSINRVL + +    GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQ IRSMVWSHN+N+MVSGDDGG+
Subjt:  AIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGS

Query:  IKYWQNNMNNVKANKSAHKESVRDL
        +KYWQNNMNNVKANK+AHKES+RDL
Subjt:  IKYWQNNMNNVKANKSAHKESVRDL

Q7RY68 Polyadenylation factor subunit 23.1e-3246.99Show/hide
Query:  RKLTQRRAVDYTSTVVRYMQLRMWQ-RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEF
        R   +R   DY ++VV YM+ R  + R S    V + +P+  +DMLPP A   NP+ S  ++ +H+S+NK +  IN V     +   GRRL+T S SGEF
Subjt:  RKLTQRRAVDYTSTVVRYMQLRMWQ-RDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEF

Query:  TLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
        TLWNG  FNFE I+QAHD AIR++V+SH+D+W+VS D  G IKYWQ N NNV++ +  H + +RDL
Subjt:  TLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL

Q8K4P0 pre-mRNA 3' end processing protein WDR331.5e-4248Show/hide
Query:  SFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQRDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIR----GRR
        +F  KRMRK   R+ +DY  +V++Y++ R+WQRD ++   +Q       D++PP    +NP  +   KFV TS NK +C +        F++R    GRR
Subjt:  SFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQRDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIR----GRR

Query:  LITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRD
        L+TG+ SGEFTLWNG +FNFE ILQAHD  +R+M WSHND WM++ D GG +KYWQ+NMNNVK  + AHKE++R+
Subjt:  LITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRD

Q9C0J8 pre-mRNA 3' end processing protein WDR331.5e-4248Show/hide
Query:  SFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQRDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIR----GRR
        +F  KRMRK   R+ +DY  +V++Y++ R+WQRD ++   +Q       D++PP    +NP  +   KFV TS NK +C +        F++R    GRR
Subjt:  SFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQRDSKERTVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIR----GRR

Query:  LITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRD
        L+TG+ SGEFTLWNG +FNFE ILQAHD  +R+M WSHND WM++ D GG +KYWQ+NMNNVK  + AHKE++R+
Subjt:  LITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRD

U4PCM1 pre-mRNA 3' end processing protein pfs-21.7e-3040.28Show/hide
Query:  QPSASS-TTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRK--LTQRRAVDYTSTVVRYMQLRMWQRDSKERTVLQSTPAAAIDMLPPAANSDNP
        QPS SS     P   ++HH  H          +  GD    +R+RK     RR VDY STV+ + + R+WQ   K+R + Q         +P  +  D P
Subjt:  QPSASS-TTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRK--LTQRRAVDYTSTVVRYMQLRMWQRDSKERTVLQSTPAAAIDMLPPAANSDNP

Query:  STSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKAN
              KF+ T++NK +C +  V  S      G+RLITG Q+GEFTLWNG +FNFE ILQAHD AIR++ W+ N+ W++S D GG +KYWQ NMNN    
Subjt:  STSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQNNMNNVKAN

Query:  KSAHKESVRDL
         +   E++R L
Subjt:  KSAHKESVRDL

Arabidopsis top hitse value%identityAlignment
AT5G13480.1 Transducin/WD40 repeat-like superfamily protein1.1e-8573.33Show/hide
Query:  GGDFPRG-----PPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQRDSKERTVLQSTPAA
        GGD  RG     PPMMRQ SASST + P++       HPSG     P++ + DSF AKRMRK TQRRAVDYTSTVVRY+Q R WQRDS++RT LQ TPAA
Subjt:  GGDFPRG-----PPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQRDSKERTVLQSTPAA

Query:  AIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGS
        A+DMLP  A SDNPSTSFAAKFVH S+NKNRCSINRVL + +    GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQ IRSMVWSHN+N+MVSGDDGG+
Subjt:  AIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGS

Query:  IKYWQNNMNNVKANKSAHKESVRDL
        +KYWQNNMNNVKANK+AHKES+RDL
Subjt:  IKYWQNNMNNVKANKSAHKESVRDL

AT5G13480.2 Transducin/WD40 repeat-like superfamily protein2.0e-7967.52Show/hide
Query:  MMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQL-----------------------RMWQRDSKER
        MMRQ SASST + P++       HPSG     P++ + DSF AKRMRK TQRRAVDYTSTVVRY+Q                        R WQRDS++R
Subjt:  MMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQL-----------------------RMWQRDSKER

Query:  TVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNW
        T LQ TPAAA+DMLP  A SDNPSTSFAAKFVH S+NKNRCSINRVL + +    GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQ IRSMVWSHN+N+
Subjt:  TVLQSTPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNW

Query:  MVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL
        MVSGDDGG++KYWQNNMNNVKANK+AHKES+RDL
Subjt:  MVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACGGCGATCCTCAACAGTTTCAGCACCACCACCAGCAGCCCAATCAGCATCCTCATGGCGGGGATTTCCCTAGAGGCCCGCCCATGATGAGGCAACCGTCTGCTTC
TTCAACTACACTCGCTCCGGAGTTTCAACATCACCATCATCCTCGACATCCCTCTGGCCCTGCTCCTCCTCCTCCTTATGAAGCCCATGGGGATAGTTTTGCTGCAAAAA
GAATGAGAAAGCTTACTCAAAGGAGGGCAGTCGATTATACTAGTACTGTTGTGCGATACATGCAGCTTCGTATGTGGCAACGAGATTCAAAGGAAAGGACTGTGTTGCAA
TCAACTCCAGCAGCAGCTATTGATATGTTGCCTCCAGCTGCTAATTCAGATAATCCATCTACGAGCTTTGCAGCAAAGTTTGTCCATACGTCGATCAACAAAAATCGTTG
TTCAATTAATAGAGTGTTGGTAAGTTCTACTTTTCTTATTAGGGGGAGACGTCTTATTACAGGCTCACAAAGTGGCGAATTTACCCTTTGGAATGGACAGTCGTTCAATT
TTGAAATGATTCTTCAGGCTCATGATCAAGCAATTAGGTCTATGGTATGGAGCCACAACGACAACTGGATGGTGTCTGGTGATGATGGGGGCTCAATAAAGTATTGGCAA
AATAACATGAATAATGTGAAGGCGAATAAATCTGCTCATAAAGAATCAGTTCGGGACTTGAGGTAG
mRNA sequenceShow/hide mRNA sequence
AGAAAAACAAATCTGTGCCGCCAGAAAACTCGAGACCTCGGACACGCCTGCTGAATTCGCTCATATGAACAAACTGAGTGAGAAAATGTTTAGGGTTTAAGGGTTTTAAC
CAATCCTCTTCTCTACATTTCTTCTCAGTTCGTACTCTCTTCTCTTCTTCTAGACATTGGATTTTCCTTTCACTCGTCGGCTTCATCAATTGCATTAGTTTCAGCTTCTA
TATAACATGTACGGCGATCCTCAACAGTTTCAGCACCACCACCAGCAGCCCAATCAGCATCCTCATGGCGGGGATTTCCCTAGAGGCCCGCCCATGATGAGGCAACCGTC
TGCTTCTTCAACTACACTCGCTCCGGAGTTTCAACATCACCATCATCCTCGACATCCCTCTGGCCCTGCTCCTCCTCCTCCTTATGAAGCCCATGGGGATAGTTTTGCTG
CAAAAAGAATGAGAAAGCTTACTCAAAGGAGGGCAGTCGATTATACTAGTACTGTTGTGCGATACATGCAGCTTCGTATGTGGCAACGAGATTCAAAGGAAAGGACTGTG
TTGCAATCAACTCCAGCAGCAGCTATTGATATGTTGCCTCCAGCTGCTAATTCAGATAATCCATCTACGAGCTTTGCAGCAAAGTTTGTCCATACGTCGATCAACAAAAA
TCGTTGTTCAATTAATAGAGTGTTGGTAAGTTCTACTTTTCTTATTAGGGGGAGACGTCTTATTACAGGCTCACAAAGTGGCGAATTTACCCTTTGGAATGGACAGTCGT
TCAATTTTGAAATGATTCTTCAGGCTCATGATCAAGCAATTAGGTCTATGGTATGGAGCCACAACGACAACTGGATGGTGTCTGGTGATGATGGGGGCTCAATAAAGTAT
TGGCAAAATAACATGAATAATGTGAAGGCGAATAAATCTGCTCATAAAGAATCAGTTCGGGACTTGAGGTAG
Protein sequenceShow/hide protein sequence
MYGDPQQFQHHHQQPNQHPHGGDFPRGPPMMRQPSASSTTLAPEFQHHHHPRHPSGPAPPPPYEAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQLRMWQRDSKERTVLQ
STPAAAIDMLPPAANSDNPSTSFAAKFVHTSINKNRCSINRVLVSSTFLIRGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIKYWQ
NNMNNVKANKSAHKESVRDLR