| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG6601940.1 DNA-directed RNA polymerase V subunit 1, partial [Cucurbita argyrosperma subsp. sororia] | 1.2e-57 | 99.08 | Show/hide |
Query: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
MEE PCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Subjt: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Query: KCLKMKKNK
KCLKMKKNK
Subjt: KCLKMKKNK
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| KAG7032636.1 DNA-directed RNA polymerase V subunit 1, partial [Cucurbita argyrosperma subsp. argyrosperma] | 1.2e-57 | 99.08 | Show/hide |
Query: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
MEE PCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Subjt: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Query: KCLKMKKNK
KCLKMKKNK
Subjt: KCLKMKKNK
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| XP_022953816.1 DNA-directed RNA polymerase V subunit 1 [Cucurbita moschata] | 4.2e-58 | 100 | Show/hide |
Query: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Subjt: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Query: KCLKMKKNK
KCLKMKKNK
Subjt: KCLKMKKNK
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| XP_022989833.1 DNA-directed RNA polymerase V subunit 1 [Cucurbita maxima] | 4.2e-58 | 100 | Show/hide |
Query: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Subjt: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Query: KCLKMKKNK
KCLKMKKNK
Subjt: KCLKMKKNK
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| XP_023517905.1 DNA-directed RNA polymerase V subunit 1 [Cucurbita pepo subsp. pepo] | 1.6e-57 | 99.08 | Show/hide |
Query: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
MEEAPCCSSILDGEIVGIRFALA+GQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Subjt: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Query: KCLKMKKNK
KCLKMKKNK
Subjt: KCLKMKKNK
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0KN85 DNA-directed RNA polymerase subunit | 4.7e-55 | 95.41 | Show/hide |
Query: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
MEEAP CSSILD EIVGIRF+LANGQEICIAAISDCPITHASQLSNPFLGLPIE+GKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Subjt: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Query: KCLKMKKNK
KCLKMKK K
Subjt: KCLKMKKNK
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| A0A1S3CPU1 DNA-directed RNA polymerase subunit | 1.0e-54 | 94.5 | Show/hide |
Query: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
MEEAP CSSILD EIVGIRF+LANGQEICIAAISDCPITHASQLSNPFLGLPIE+GKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITEL+KMLSLLCL
Subjt: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Query: KCLKMKKNK
KCLKMKK K
Subjt: KCLKMKKNK
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| A0A6J1CY08 DNA-directed RNA polymerase subunit | 3.2e-56 | 95.41 | Show/hide |
Query: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
ME+APCCS ILDGEIVGIRF+LANGQEICIAAISDCPITHASQLSNPFLGLPIE+GKCESCGTSEPGKCEGHFGYIELPIPI+HPNHITELKKMLSLLCL
Subjt: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Query: KCLKMKKNK
KCLKMKKNK
Subjt: KCLKMKKNK
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| A0A6J1GP51 DNA-directed RNA polymerase subunit | 2.0e-58 | 100 | Show/hide |
Query: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Subjt: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Query: KCLKMKKNK
KCLKMKKNK
Subjt: KCLKMKKNK
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| A0A6J1JRG8 DNA-directed RNA polymerase subunit | 2.0e-58 | 100 | Show/hide |
Query: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Subjt: MEEAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCL
Query: KCLKMKKNK
KCLKMKKNK
Subjt: KCLKMKKNK
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| A5DCV3 DNA-directed RNA polymerase II subunit RPB1 (Fragments) | 7.8e-07 | 38.71 | Show/hide |
Query: LSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKM
L++P LG KC++CG + +C GHFG+IEL P++H I ++KK+ +C+ C K+
Subjt: LSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKM
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| P25202 DNA-directed RNA polymerase III subunit RPC1 | 2.1e-07 | 43.1 | Show/hide |
Query: LGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMK
LGL + GKC +CG + C GHFG I L +P++HP I + + MLS++C C ++K
Subjt: LGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMK
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| P36594 DNA-directed RNA polymerase II subunit rpb1 | 7.8e-07 | 39.68 | Show/hide |
Query: LSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMK
L +P LG KC++CG + C GHFG+IEL P++H ++++KK+L +C C K+K
Subjt: LSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMK
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| Q5D869 DNA-directed RNA polymerase V subunit 1 | 2.4e-40 | 71.03 | Show/hide |
Query: EAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKC
E S ILDGEIVGI FALA+ EICI +IS+ I H SQL+N FLGLP+E+GKCESCG +EP KCEGHFGYI+LP+PIYHP H+ ELK+MLSLLCLKC
Subjt: EAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKC
Query: LKMKKNK
LK+KK K
Subjt: LKMKKNK
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| Q8SSC4 DNA-directed RNA polymerase II subunit RPB1 | 1.7e-06 | 42.59 | Show/hide |
Query: CESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKNKTG
C+SCG + C GHFG+IEL P++H +I+++KK+L +C C K+K + G
Subjt: CESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKNKTG
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G63020.1 nuclear RNA polymerase D1A | 1.6e-07 | 27.84 | Show/hide |
Query: GEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKNK
G + I F+++N + +S + +Q+++ LGLP C +CG+ + CEGHFG I I +P + E+ +L+ +C C ++K +
Subjt: GEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKNK
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| AT1G63020.2 nuclear RNA polymerase D1A | 1.6e-07 | 27.84 | Show/hide |
Query: GEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKNK
G + I F+++N + +S + +Q+++ LGLP C +CG+ + CEGHFG I I +P + E+ +L+ +C C ++K +
Subjt: GEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKNK
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| AT2G40030.1 nuclear RNA polymerase D1B | 1.7e-41 | 71.03 | Show/hide |
Query: EAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKC
E S ILDGEIVGI FALA+ EICI +IS+ I H SQL+N FLGLP+E+GKCESCG +EP KCEGHFGYI+LP+PIYHP H+ ELK+MLSLLCLKC
Subjt: EAPCCSSILDGEIVGIRFALANGQEICIAAISDCPITHASQLSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKC
Query: LKMKKNK
LK+KK K
Subjt: LKMKKNK
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| AT3G57660.1 nuclear RNA polymerase A1 | 1.3e-04 | 37.84 | Show/hide |
Query: PITHASQLSNPF--------LGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKC
PI H + NPF LG + C SCG + C GH G+IEL PIYHP L L C C
Subjt: PITHASQLSNPF--------LGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKC
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| AT4G35800.1 RNA polymerase II large subunit | 1.2e-05 | 35.48 | Show/hide |
Query: LSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKM
LS+ LG KCE+C + +C GHFGY+EL P+YH + + ++ +C C K+
Subjt: LSNPFLGLPIEYGKCESCGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKM
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