; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G023560 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G023560
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionnucleolin-like
Genome locationCmo_Chr04:17571414..17571998
RNA-Seq ExpressionCmoCh04G023560
SyntenyCmoCh04G023560
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601992.1 B3 domain-containing transcription factor FUS3, partial [Cucurbita argyrosperma subsp. sororia]1.8e-8896.91Show/hide
Query:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK
        MAETTNTEE VFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDY+EVDSDEDEEED SDDGGK
Subjt:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK

Query:  LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
        LSGK+DEDRKGKGIMKDDKGKGKFIEEEE  DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
Subjt:  LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

KAG7032689.1 hypothetical protein SDJN02_06739, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-8896.91Show/hide
Query:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK
        MAETTNTEE VFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDY+EVDSDEDEEED SDDGGK
Subjt:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK

Query:  LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
        LSGK+DEDRKGKGIMKDDKGKGKFIEEEE  DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
Subjt:  LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

XP_022921946.1 nucleolin-like [Cucurbita moschata]7.0e-93100Show/hide
Query:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK
        MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK
Subjt:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK

Query:  LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
        LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
Subjt:  LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

XP_022990828.1 nucleolin-like [Cucurbita maxima]3.2e-8594.33Show/hide
Query:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK
        MAETTNTEE VFDAKRKVD CSEEKQERSNKIQKLEVVEGDSCNAVKNGVSG GIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEED SDDGGK
Subjt:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK

Query:  LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
        LSGKVDEDRKGKGIMKDDKGKGKFI+EEE     DDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGN+NDDSSDSDA
Subjt:  LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

XP_023551987.1 nuclear polyadenylated RNA-binding protein 3-like [Cucurbita pepo subsp. pepo]4.4e-8796.39Show/hide
Query:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK
        MAETTNTEE VFD KRKVD CSEEKQERSNKIQKLEVVEGDSCNAVKNGVSG GIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEED SDDGGK
Subjt:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK

Query:  LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
        LSGKVDEDRKGKGIMKDDKGKGKFIEEEE  DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
Subjt:  LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

TrEMBL top hitse value%identityAlignment
A0A0A0KMR8 Uncharacterized protein3.3e-4865.55Show/hide
Query:  MAETTNTEESV-FDAKRK-VDTCSEEKQERSNKIQKLEVVEG-DSCNAVKNGVSGGGIDG---------DSLVEG-GKDG--GVCVDVGEAEDEDYEEVD
        MAE TN EE V FDAKRK  D+C + K+ERSNKIQKLEVVEG +SCN V N    G   G          +++EG G DG  G  +D G+ E+EDYE+ D
Subjt:  MAETTNTEESV-FDAKRK-VDTCSEEKQERSNKIQKLEVVEG-DSCNAVKNGVSGGGIDG---------DSLVEG-GKDG--GVCVDVGEAEDEDYEEVD

Query:  SDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGND
          ED+E        K S KV EDRKGKGIMKDDKGKGK IEE++DDD+D  DDGS+L SEESDLSDDPL EVDLDNILPSRTRRRTVHPGVYFATDLGND
Subjt:  SDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGND

Query:  NDDSSDSDA
        +DDSSDSDA
Subjt:  NDDSSDSDA

A0A6J1CKB5 prothymosin alpha-B1.6e-5066.35Show/hide
Query:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGG------GIDGDSLVEGGKDG--GVCVDVGEAED-----EDYEEVDSD
        MAETT+ EE+ FDAKRK D C E K+E SNKIQKLEVV+ +SC+ VK   +G        ID DSL   GKDG  G  VD GEA+D     EDYE+ + +
Subjt:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGG------GIDGDSLVEGGKDG--GVCVDVGEAED-----EDYEEVDSD

Query:  EDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDD-GSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDN
         DEEED S+          EDRKGKGI+KDDKGKGK IEE++DDDD+D  D GSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFA DLGND+
Subjt:  EDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDD-GSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDN

Query:  DDSSDSDA
        DDSSDSDA
Subjt:  DDSSDSDA

A0A6J1E206 nucleolin-like3.4e-93100Show/hide
Query:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK
        MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK
Subjt:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK

Query:  LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
        LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
Subjt:  LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

A0A6J1JJY9 nucleolin-like1.5e-8594.33Show/hide
Query:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK
        MAETTNTEE VFDAKRKVD CSEEKQERSNKIQKLEVVEGDSCNAVKNGVSG GIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEED SDDGGK
Subjt:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGK

Query:  LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
        LSGKVDEDRKGKGIMKDDKGKGKFI+EEE     DDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGN+NDDSSDSDA
Subjt:  LSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

A0A6J1K0H1 nucleolin-like1.8e-4664.59Show/hide
Query:  MAETTNT-EESVFDAKRK-VDTCSEEKQERSNKIQKLEVVEGDSCNAV-KNGVSGGGIDGDSLVEG------GKDGGVC---VDVGEAEDEDYEEVDSDE
        MAET ++ EE+ FDAKRK  D C E K+ERSNKIQKLEVVEG+ CN V KNG +G    GD  ++       GKD GV    VD G  E EDY       
Subjt:  MAETTNT-EESVFDAKRK-VDTCSEEKQERSNKIQKLEVVEGDSCNAV-KNGVSGGGIDGDSLVEG------GKDGGVC---VDVGEAEDEDYEEVDSDE

Query:  DEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDD---DDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGND
          +ED  ++G K SGK  +DRKGKGIMKDDKGKGK IEE++DDDDDD+   DDGSE  +EESDLSDDPL EVDLDNILPSRTRRRTVHPGVYFATDLGN+
Subjt:  DEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDD---DDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGND

Query:  NDDSSDSDA
        +DDSSDSDA
Subjt:  NDDSSDSDA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G12830.1 unknown protein3.1e-2241.63Show/hide
Query:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGG-------------IDGDSLVEGGK-----DGGVCVDVGEAEDEDYE
        MA+  N ++S F  KRK D   +++   +NK QKL      + +  K+G + G              I  +S V   K     + GV  DVG  E+++ E
Subjt:  MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGG-------------IDGDSLVEGGK-----DGGVCVDVGEAEDEDYE

Query:  EVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKGKGKFIE-EEEDDDDDDDDDGSELG---SEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYF
        E + ++DEEE+  ++          DRKGKGI ++DKGKGK IE EE DD+DD DDD  + G    +ESD SDDPL EVDLDNILPSRTRRR+  PGV+ 
Subjt:  EVDSDEDEEEDGSDDGGKLSGKVDEDRKGKGIMKDDKGKGKFIE-EEEDDDDDDDDDGSELG---SEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYF

Query:  ATDLGN-----DNDDSSDSDA
          +  N     ++D+SSDSDA
Subjt:  ATDLGN-----DNDDSSDSDA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAACTACTAACACAGAGGAGTCCGTATTTGATGCGAAGCGCAAAGTTGATACCTGCTCTGAAGAGAAACAGGAGCGTTCGAACAAAATTCAGAAGCTCGAAGT
GGTTGAGGGCGATTCCTGCAATGCTGTGAAGAATGGTGTGAGTGGTGGAGGGATTGATGGCGATTCTTTGGTTGAGGGAGGGAAAGATGGTGGAGTTTGTGTGGATGTGG
GAGAAGCAGAAGATGAAGATTATGAGGAGGTGGACAGCGACGAGGATGAGGAGGAAGATGGCAGCGACGATGGTGGAAAGTTGAGTGGGAAAGTGGATGAGGATCGTAAG
GGGAAGGGTATCATGAAGGACGACAAAGGAAAAGGGAAATTTATTGAGGAGGAGGAAGACGACGACGACGACGACGACGACGATGGAAGTGAGTTAGGCTCTGAAGAGAG
CGATTTGTCGGATGATCCGCTTACGGAGGTCGATTTGGACAACATACTTCCTTCAAGAACGCGAAGGCGGACTGTTCATCCTGGAGTTTATTTTGCTACGGATCTGGGGA
ACGACAACGATGATAGCAGCGATAGCGATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAACTACTAACACAGAGGAGTCCGTATTTGATGCGAAGCGCAAAGTTGATACCTGCTCTGAAGAGAAACAGGAGCGTTCGAACAAAATTCAGAAGCTCGAAGT
GGTTGAGGGCGATTCCTGCAATGCTGTGAAGAATGGTGTGAGTGGTGGAGGGATTGATGGCGATTCTTTGGTTGAGGGAGGGAAAGATGGTGGAGTTTGTGTGGATGTGG
GAGAAGCAGAAGATGAAGATTATGAGGAGGTGGACAGCGACGAGGATGAGGAGGAAGATGGCAGCGACGATGGTGGAAAGTTGAGTGGGAAAGTGGATGAGGATCGTAAG
GGGAAGGGTATCATGAAGGACGACAAAGGAAAAGGGAAATTTATTGAGGAGGAGGAAGACGACGACGACGACGACGACGACGATGGAAGTGAGTTAGGCTCTGAAGAGAG
CGATTTGTCGGATGATCCGCTTACGGAGGTCGATTTGGACAACATACTTCCTTCAAGAACGCGAAGGCGGACTGTTCATCCTGGAGTTTATTTTGCTACGGATCTGGGGA
ACGACAACGATGATAGCAGCGATAGCGATGCTTGA
Protein sequenceShow/hide protein sequence
MAETTNTEESVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYEEVDSDEDEEEDGSDDGGKLSGKVDEDRK
GKGIMKDDKGKGKFIEEEEDDDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA