; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G024540 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G024540
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptioncold shock protein 2-like
Genome locationCmo_Chr04:18165540..18166049
RNA-Seq ExpressionCmoCh04G024540
SyntenyCmoCh04G024540
Gene Ontology termsGO:0050896 - response to stimulus (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR002059 - Cold-shock protein, DNA-binding
IPR011129 - Cold shock domain
IPR012340 - Nucleic acid-binding, OB-fold
IPR019844 - Cold-shock (CSD) domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022938383.1 cold shock protein 2-like [Cucurbita moschata]3.9e-6367.68Show/hide
Query:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG
        MAEVK+S+GTV+WFSAQKGFGFIAP D+ +DLFVH TSI S+GFRTLFDGQAVEF+IDY +D RAKAVDVTV GR+SG+GGGRGG R RG G G+ GG G
Subjt:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG

Query:  GYG--DFGR---------------------GECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGG------SCYNCGETGHFARECENESK
        GYG   FGR                     GECYNCGRMGHLARDCY+GNG APP+RG GRGYGGGR +GGG       CYNCG+TGHFAR+C+NESK
Subjt:  GYG--DFGR---------------------GECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGG------SCYNCGETGHFARECENESK

XP_022964534.1 cold shock protein 2-like [Cucurbita moschata]5.7e-91100Show/hide
Query:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG
        MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG
Subjt:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG

Query:  GYGDFGRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGGSCYNCGETGHFARECENESK
        GYGDFGRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGGSCYNCGETGHFARECENESK
Subjt:  GYGDFGRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGGSCYNCGETGHFARECENESK

XP_022989817.1 cold shock protein 2-like [Cucurbita maxima]9.8e-7586.98Show/hide
Query:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG
        MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLF+GQAVEFSIDYGQDH AK VDVTVIGRTS FGGGRGGGR RGT SG+  GRG
Subjt:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG

Query:  GYGDFGRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGGSCYNCGETGHFARECENESK
        GYG FG+GECYNCGRMGHLARDCY+GNGRAPPN GRGRGY   R F GG CYNCGETGHFAR+ +NESK
Subjt:  GYGDFGRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGGSCYNCGETGHFARECENESK

XP_022993723.1 cold shock protein 2-like [Cucurbita maxima]2.3e-6368.37Show/hide
Query:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG
        MAEVK+S+GTV+WFSAQKGFGFIAP D+ +DLFVH TSI S+GFRTLFDGQAVEF+IDY +D RAKAVDVTV GR+SG+GGGRGG R RG G G+ GG G
Subjt:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG

Query:  GYG--DFGR---------------------GECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGG----SCYNCGETGHFARECENESK
        GYG   FGR                     GECYNCGRMGHLARDCY+GNG APP+RG GRGYGGGR +GGG     CYNCG+TGHFAR+C+NESK
Subjt:  GYG--DFGR---------------------GECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGG----SCYNCGETGHFARECENESK

XP_023549669.1 glycine-rich protein 2-like [Cucurbita pepo subsp. pepo]1.0e-6367.68Show/hide
Query:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG
        MAEVK+S+GTV+WFSAQKGFGFIAP D+ +DLFVH TSI S+GFRTLFDGQAVEFSIDY +D RAKAVDVTV GR+SG+GGGRGG R RG G G+ GG G
Subjt:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG

Query:  GYGDFGR-------------------------GECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGG----SCYNCGETGHFARECENESK
        GYG  GR                         GECYNCGRMGHLARDCY+GNG APP+RG GRGYGGGR +GGG     CYNCG+TGHFAR+C+NESK
Subjt:  GYGDFGR-------------------------GECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGG----SCYNCGETGHFARECENESK

TrEMBL top hitse value%identityAlignment
A0A1S3CPN9 cold shock protein 2-like3.4e-5768.48Show/hide
Query:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG
        MAEVK+S+GTV+WFSAQKGFGFIAP D+ +DLFVH TSI S+GFRTLFDGQ VEF+IDY QD RAKAVDVTVI R++ +GGGRGGGR RG   G+ GG G
Subjt:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG

Query:  -------------GYGDFGRGECYNCGRMGHLARDCYQGNGRAPPNR--GRGRGYGGGREFGGGSCYNCGETGHFARECENESK
                     G G  G GECYNCGRMGHLARDCY+GNG APP R    GRGYGGG   GG  CYNCG+TGHFAR+C+NESK
Subjt:  -------------GYGDFGRGECYNCGRMGHLARDCYQGNGRAPPNR--GRGRGYGGGREFGGGSCYNCGETGHFARECENESK

A0A6J1FIQ9 cold shock protein 2-like1.9e-6367.68Show/hide
Query:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG
        MAEVK+S+GTV+WFSAQKGFGFIAP D+ +DLFVH TSI S+GFRTLFDGQAVEF+IDY +D RAKAVDVTV GR+SG+GGGRGG R RG G G+ GG G
Subjt:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG

Query:  GYG--DFGR---------------------GECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGG------SCYNCGETGHFARECENESK
        GYG   FGR                     GECYNCGRMGHLARDCY+GNG APP+RG GRGYGGGR +GGG       CYNCG+TGHFAR+C+NESK
Subjt:  GYG--DFGR---------------------GECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGG------SCYNCGETGHFARECENESK

A0A6J1HNI0 cold shock protein 2-like2.8e-91100Show/hide
Query:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG
        MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG
Subjt:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG

Query:  GYGDFGRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGGSCYNCGETGHFARECENESK
        GYGDFGRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGGSCYNCGETGHFARECENESK
Subjt:  GYGDFGRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGGSCYNCGETGHFARECENESK

A0A6J1JGV4 cold shock protein 2-like4.8e-7586.98Show/hide
Query:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG
        MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLF+GQAVEFSIDYGQDH AK VDVTVIGRTS FGGGRGGGR RGT SG+  GRG
Subjt:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG

Query:  GYGDFGRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGGSCYNCGETGHFARECENESK
        GYG FG+GECYNCGRMGHLARDCY+GNGRAPPN GRGRGY   R F GG CYNCGETGHFAR+ +NESK
Subjt:  GYGDFGRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGGSCYNCGETGHFARECENESK

A0A6J1K351 cold shock protein 2-like1.1e-6368.37Show/hide
Query:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG
        MAEVK+S+GTV+WFSAQKGFGFIAP D+ +DLFVH TSI S+GFRTLFDGQAVEF+IDY +D RAKAVDVTV GR+SG+GGGRGG R RG G G+ GG G
Subjt:  MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRG

Query:  GYG--DFGR---------------------GECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGG----SCYNCGETGHFARECENESK
        GYG   FGR                     GECYNCGRMGHLARDCY+GNG APP+RG GRGYGGGR +GGG     CYNCG+TGHFAR+C+NESK
Subjt:  GYG--DFGR---------------------GECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGG----SCYNCGETGHFARECENESK

SwissProt top hitse value%identityAlignment
O65639 Cold shock protein 19.4e-2847.2Show/hide
Query:  KSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRGGYGDF
        +STG V WF+A KG+GFI P D   +LFVH +SI+S+G+R+L  G AVEF+I  G D + KAV+VT        GGG     +   G+G   G GG G  
Subjt:  KSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRGGYGDF

Query:  GRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGG--REFGGGSCYNCGETGHFAREC
            CYNCG +GH+++DC           G G G GGG  R  GG  CYNCG+TGHFAR+C
Subjt:  GRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGG--REFGGGSCYNCGETGHFAREC

P27484 Glycine-rich protein 22.2e-3244.93Show/hide
Query:  KKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVT------------------------VIGRTSGF-
        +++ GTVKWFS QKGFGFI P D GEDLFVH + I S+GFR+L +G+ VEF ++ G D R KAVDVT                          G + G+ 
Subjt:  KKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVT------------------------VIGRTSGF-

Query:  GGGRGGGRDRGTGSGQSGGRGGY----------------------GDFGRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGGSCYNCGET
        GGGRGG R  G G G  GG GGY                      G  G   C+ CG  GH ARDC Q  G      G GR  GGG   GGG CY CGE 
Subjt:  GGGRGGGRDRGTGSGQSGGRGGY----------------------GDFGRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGGSCYNCGET

Query:  GHFAREC
        GHFAREC
Subjt:  GHFAREC

Q38896 Cold shock domain-containing protein 41.8e-3148.6Show/hide
Query:  GTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVT------VIGRTS-----------GFGGGRGGGRDRGT
        GTVKWF  QKGFGFI P D G+DLFVH +SI S+GFR+L   ++VEF ++     R KA++V+      V G +            G GGGRGGGR  G+
Subjt:  GTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVT------VIGRTS-----------GFGGGRGGGRDRGT

Query:  GSGQSGGRGGYGDFGRG---ECYNCGRMGHLARDCYQGNGRAPPNRGRGR---GYGGGREFGGGSCYNCGETGHFAREC
          G  GGRG  G  G G    C+ CG  GH+AR+C QG G      G GR   G GGG   GG SCY+CGE+GHFAR+C
Subjt:  GSGQSGGRGGYGDFGRG---ECYNCGRMGHLARDCYQGNGRAPPNRGRGR---GYGGGREFGGGSCYNCGETGHFAREC

Q41188 Cold shock protein 22.1e-3547.18Show/hide
Query:  KKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVT--------------VIGRTSGFGGGRGGGRDRG
        ++  G+VKWF  QKGFGFI P D G+DLFVH +SI S+GFR+L   +AVEF ++   ++R KA+DV+                G   GFGGGRGGG  RG
Subjt:  KKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVT--------------VIGRTSGFGGGRGGGRDRG

Query:  TGSGQSGGRGGYGDFGRG-----ECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREF----------------GGGSCYNCGETGHFAREC
        +G G  GG GGYG  G G     +CY CG  GH+ARDC +G G      G G GYGGG  +                GGGSCY+CGE+GHFAR+C
Subjt:  TGSGQSGGRGGYGDFGRG-----ECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREF----------------GGGSCYNCGETGHFAREC

Q94C69 Cold shock domain-containing protein 37.9e-2741.58Show/hide
Query:  KSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIG-----RTSGFGGGRGGG-------------R
        +S G V WFS  KG+GFI P D GE+LFVH +SI+SDGFR+L  G++VE+ I  G D + KA++VT  G     +      G GG               
Subjt:  KSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIG-----RTSGFGGGRGGG-------------R

Query:  DRGTGSGQSGGRGGYGDFGRGECYNCGRMGHLARDCYQ-GNGRAPPNRGRGR------------------------GYGGGREFGGGSCYNCGETGHFAR
        D G+G    GG GG    G GECY CG +GH ARDC Q G G +    G GR                        G GGGR  GG  CY CG  GHFAR
Subjt:  DRGTGSGQSGGRGGYGDFGRGECYNCGRMGHLARDCYQ-GNGRAPPNRGRGR------------------------GYGGGREFGGGSCYNCGETGHFAR

Query:  EC
        +C
Subjt:  EC

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 35.6e-2841.58Show/hide
Query:  KSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIG-----RTSGFGGGRGGG-------------R
        +S G V WFS  KG+GFI P D GE+LFVH +SI+SDGFR+L  G++VE+ I  G D + KA++VT  G     +      G GG               
Subjt:  KSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIG-----RTSGFGGGRGGG-------------R

Query:  DRGTGSGQSGGRGGYGDFGRGECYNCGRMGHLARDCYQ-GNGRAPPNRGRGR------------------------GYGGGREFGGGSCYNCGETGHFAR
        D G+G    GG GG    G GECY CG +GH ARDC Q G G +    G GR                        G GGGR  GG  CY CG  GHFAR
Subjt:  DRGTGSGQSGGRGGYGDFGRGECYNCGRMGHLARDCYQ-GNGRAPPNRGRGR------------------------GYGGGREFGGGSCYNCGETGHFAR

Query:  EC
        +C
Subjt:  EC

AT2G21060.1 glycine-rich protein 2B1.3e-3248.6Show/hide
Query:  GTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVT------VIGRTS-----------GFGGGRGGGRDRGT
        GTVKWF  QKGFGFI P D G+DLFVH +SI S+GFR+L   ++VEF ++     R KA++V+      V G +            G GGGRGGGR  G+
Subjt:  GTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVT------VIGRTS-----------GFGGGRGGGRDRGT

Query:  GSGQSGGRGGYGDFGRG---ECYNCGRMGHLARDCYQGNGRAPPNRGRGR---GYGGGREFGGGSCYNCGETGHFAREC
          G  GGRG  G  G G    C+ CG  GH+AR+C QG G      G GR   G GGG   GG SCY+CGE+GHFAR+C
Subjt:  GSGQSGGRGGYGDFGRG---ECYNCGRMGHLARDCYQGNGRAPPNRGRGR---GYGGGREFGGGSCYNCGETGHFAREC

AT4G36020.1 cold shock domain protein 16.7e-2947.2Show/hide
Query:  KSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRGGYGDF
        +STG V WF+A KG+GFI P D   +LFVH +SI+S+G+R+L  G AVEF+I  G D + KAV+VT        GGG     +   G+G   G GG G  
Subjt:  KSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRGGYGDF

Query:  GRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGG--REFGGGSCYNCGETGHFAREC
            CYNCG +GH+++DC           G G G GGG  R  GG  CYNCG+TGHFAR+C
Subjt:  GRGECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGG--REFGGGSCYNCGETGHFAREC

AT4G38680.1 glycine rich protein 21.5e-3647.18Show/hide
Query:  KKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVT--------------VIGRTSGFGGGRGGGRDRG
        ++  G+VKWF  QKGFGFI P D G+DLFVH +SI S+GFR+L   +AVEF ++   ++R KA+DV+                G   GFGGGRGGG  RG
Subjt:  KKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVT--------------VIGRTSGFGGGRGGGRDRG

Query:  TGSGQSGGRGGYGDFGRG-----ECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREF----------------GGGSCYNCGETGHFAREC
        +G G  GG GGYG  G G     +CY CG  GH+ARDC +G G      G G GYGGG  +                GGGSCY+CGE+GHFAR+C
Subjt:  TGSGQSGGRGGYGDFGRG-----ECYNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREF----------------GGGSCYNCGETGHFAREC

AT5G04280.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain1.4e-0541.23Show/hide
Query:  GFRTLFDGQAVEFSID--YGQDHRAKAVDVT----VIGRTSGFGGGRGGGRDRG---TGSGQ-SGGRGGYGDFGRGECYNCGRMGHLARDC-YQGNGRAP
        GF T  D +A++ SI   +G+D   + + V      +GR  G   G  GGRD G    G G   GG GG G  G  EC+ CGR+GH ARDC   G GR  
Subjt:  GFRTLFDGQAVEFSID--YGQDHRAKAVDVT----VIGRTSGFGGGRGGGRDRG---TGSGQ-SGGRGGYGDFGRGECYNCGRMGHLARDC-YQGNGRAP

Query:  PNRG---RGRGYGG
        P  G   R   YGG
Subjt:  PNRG---RGRGYGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGGTGAAGAAATCGACGGGAACCGTGAAGTGGTTCAGTGCGCAGAAGGGGTTTGGCTTCATAGCTCCACATGATTCCGGCGAGGACCTTTTTGTGCACCACAC
CTCCATTTTGTCCGACGGATTTCGGACCCTTTTCGATGGTCAGGCGGTTGAATTTTCCATCGATTATGGCCAAGATCACCGTGCCAAGGCCGTTGACGTTACTGTAATTG
GTAGAACTAGTGGGTTCGGAGGTGGCCGTGGCGGTGGGAGAGATAGAGGCACCGGTTCTGGCCAGTCCGGCGGGCGAGGAGGTTATGGTGATTTTGGCAGAGGAGAGTGT
TACAATTGTGGTCGGATGGGTCATTTAGCTAGGGATTGTTACCAGGGAAATGGCCGTGCACCTCCCAACCGTGGACGGGGTCGTGGATACGGCGGCGGTCGGGAATTTGG
CGGGGGCAGTTGTTATAATTGTGGAGAAACAGGACATTTTGCTAGAGAATGTGAAAATGAAAGCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGGTGAAGAAATCGACGGGAACCGTGAAGTGGTTCAGTGCGCAGAAGGGGTTTGGCTTCATAGCTCCACATGATTCCGGCGAGGACCTTTTTGTGCACCACAC
CTCCATTTTGTCCGACGGATTTCGGACCCTTTTCGATGGTCAGGCGGTTGAATTTTCCATCGATTATGGCCAAGATCACCGTGCCAAGGCCGTTGACGTTACTGTAATTG
GTAGAACTAGTGGGTTCGGAGGTGGCCGTGGCGGTGGGAGAGATAGAGGCACCGGTTCTGGCCAGTCCGGCGGGCGAGGAGGTTATGGTGATTTTGGCAGAGGAGAGTGT
TACAATTGTGGTCGGATGGGTCATTTAGCTAGGGATTGTTACCAGGGAAATGGCCGTGCACCTCCCAACCGTGGACGGGGTCGTGGATACGGCGGCGGTCGGGAATTTGG
CGGGGGCAGTTGTTATAATTGTGGAGAAACAGGACATTTTGCTAGAGAATGTGAAAATGAAAGCAAATGA
Protein sequenceShow/hide protein sequence
MAEVKKSTGTVKWFSAQKGFGFIAPHDSGEDLFVHHTSILSDGFRTLFDGQAVEFSIDYGQDHRAKAVDVTVIGRTSGFGGGRGGGRDRGTGSGQSGGRGGYGDFGRGEC
YNCGRMGHLARDCYQGNGRAPPNRGRGRGYGGGREFGGGSCYNCGETGHFARECENESK