CuGenDBv2

Gene ID	CmoCh04G024940
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Proteasome subunit beta
Genome location	Cmo_Chr04:18360631..18362598
RNA-Seq Expression	CmoCh04G024940
Synteny	CmoCh04G024940
Gene Ontology terms	GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0019774 - proteasome core complex, beta-subunit complex (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004298 - threonine-type endopeptidase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0061976.1 proteasome subunit beta type-3-like [Cucumis melo var. makuwa]

2.8e-09

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKSIQS
        LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK I +
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKSIQS

KAG6602111.1 Proteasome subunit beta type-3-A, partial [Cucurbita argyrosperma subsp. sororia]

8.1e-09

97.22

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

KAG6602114.1 Proteasome subunit beta type-3-B, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-09

94.74

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKSI
        LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK +
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKSI

XP_022954907.1 proteasome subunit beta type-3-A-like isoform X2 [Cucurbita moschata]

8.1e-09

97.22

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

XP_022991149.1 proteasome subunit beta type-3-A-like isoform X2 [Cucurbita maxima]

8.1e-09

97.22

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7V654 Proteasome subunit beta type-3-like

1.3e-09

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKSIQS
        LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK I +
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKSIQS

A0A5D3CF09 E3 ubiquitin ligase BIG BROTHER-related-like

3.9e-09

97.22

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

A0A6J1GSE0 Proteasome subunit beta

3.9e-09

97.22

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

A0A6J1JU09 proteasome subunit beta type-3-A-like isoform X2

3.9e-09

97.22

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

A0A6J1JVC3 Proteasome subunit beta

3.9e-09

97.22

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQRLVYQHKL+QLREERDMKPETFASLVSARLYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

SwissProt top hits

e value

%identity

Alignment

O65084 Proteasome subunit beta type-3

4.2e-08

77.78

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQR  ++HKL+QLREER+M+PETFASLVSA LYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

O81153 Proteasome subunit beta type-3-B

7.6e-10

88.89

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

Q55D66 Proteasome subunit beta type-3

4.8e-04

55.56

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQ+LV++H L++LREERDM P   ++L++  LYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

Q9LST7 Proteasome subunit beta type-3

1.3e-09

86.11

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQRLV++HKL+QLREERDMKP+TFASLVSA LYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

Q9XI05 Proteasome subunit beta type-3-A

7.6e-10

88.89

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

Arabidopsis top hits

e value

%identity

Alignment

AT1G21720.1 proteasome beta subunit C1

5.4e-11

88.89

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

AT1G77440.1 20S proteasome beta subunit C2

5.4e-11

88.89

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

AT1G77440.2 20S proteasome beta subunit C2

5.4e-11

88.89

Show/hide

Query:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK
        LYQRLV++HKL+QLREERDMKPETFASLVSA LYEK
Subjt:  LYQRLVYQHKLHQLREERDMKPETFASLVSARLYEK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATTAGATATTTCTTGGCCTTTCGAGCCTCGGTACCGATGCTCAGACACTGTATGTTCCTGTATCAACGGCTTGTCTATCAGCACAAACTACACCAGCTTCGAGAAGA
GAGGGACATGAAACCTGAGACATTTGCTAGCCTTGTCTCAGCACGTCTTTATGAGAAAAGCATCCAGAGTAATCCCAACCGGGTTTCCTGTTTCTTCTTCAAAGATAACC
AACAGGTTTCCTGTTGGCTTGAGGAAGGAACGTGGTACATGATACCTGGATTGAAACAACAGAAAGAATTGCTCCCCTTTTCCGGTGAGGAAGGAGACCCAGTATCGGCC
AATGCCCCAGCCGTTAACCCAAACTGCACCCTTCCCCATGGAGCCAAGGTTCAGGGCGATAGGGTCATCACCCGGAGGTGCATCAAACTGAGTCTGTCAATTGGACAATG
A

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MIRYFLAFRASVPMLRHCMFLYQRLVYQHKLHQLREERDMKPETFASLVSARLYEKSIQSNPNRVSCFFFKDNQQVSCWLEEGTWYMIPGLKQQKELLPFSGEEGDPVSA
NAPAVNPNCTLPHGAKVQGDRVITRRCIKLSLSIGQ

CmoCh04G024940 (gene) of Cucurbita moschata (Rifu) v1 genome