; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G025270 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G025270
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionF-box protein SKP2A-like
Genome locationCmo_Chr04:18587840..18589156
RNA-Seq ExpressionCmoCh04G025270
SyntenyCmoCh04G025270
Gene Ontology termsGO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
InterPro domainsIPR006553 - Leucine-rich repeat, cysteine-containing subtype
IPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602148.1 F-box protein SKP2A, partial [Cucurbita argyrosperma subsp. sororia]5.7e-5798.31Show/hide
Query:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
        WC KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDA+DTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
Subjt:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK

Query:  VLNLCGCVKATSDTALQV
        VLNLCGCVKATSDTALQV
Subjt:  VLNLCGCVKATSDTALQV

KAG7032838.1 F-box protein SKP2A, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-5799.15Show/hide
Query:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
        WC KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
Subjt:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK

Query:  VLNLCGCVKATSDTALQV
        VLNLCGCVKATSDTALQV
Subjt:  VLNLCGCVKATSDTALQV

XP_022956400.1 F-box protein SKP2A-like isoform X1 [Cucurbita moschata]1.8e-58100Show/hide
Query:  WCKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKV
        WCKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKV
Subjt:  WCKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKV

Query:  LNLCGCVKATSDTALQV
        LNLCGCVKATSDTALQV
Subjt:  LNLCGCVKATSDTALQV

XP_022956423.1 F-box protein SKP2A-like isoform X2 [Cucurbita moschata]1.8e-58100Show/hide
Query:  WCKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKV
        WCKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKV
Subjt:  WCKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKV

Query:  LNLCGCVKATSDTALQV
        LNLCGCVKATSDTALQV
Subjt:  LNLCGCVKATSDTALQV

XP_023525237.1 F-box protein SKP2A-like [Cucurbita pepo subsp. pepo]5.7e-5798.31Show/hide
Query:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
        WC KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDA+DTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
Subjt:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK

Query:  VLNLCGCVKATSDTALQV
        VLNLCGCVKATSDTALQV
Subjt:  VLNLCGCVKATSDTALQV

TrEMBL top hitse value%identityAlignment
A0A0A0KFD6 F-box domain-containing protein2.9e-5188.89Show/hide
Query:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
        WC KNMNNLVLSL PKFA+LQ LILRQDKPQL DDA++TIASYC DLQVLDL KSFKLSD SLYALAHGCRDLK+LNISGCT+FSDTALAYLASYCRKLK
Subjt:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK

Query:  VLNLCGCVKATSDTALQ
        VLNLCGCVKA SDTALQ
Subjt:  VLNLCGCVKATSDTALQ

A0A6J1CIQ6 F-box protein SKP2A-like isoform X14.5e-5290.6Show/hide
Query:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
        WC KNMNNLVLSL PKF KLQTLILRQDKPQLADDA++TIASYC DLQVLDL KSFKLSD SLYALAHGCRDLKKLNISGC++FSDTALAYLASYCRKLK
Subjt:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK

Query:  VLNLCGCVKATSDTALQ
        VLNLCGCVKA SDTALQ
Subjt:  VLNLCGCVKATSDTALQ

A0A6J1GWS6 F-box protein SKP2A-like isoform X28.5e-59100Show/hide
Query:  WCKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKV
        WCKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKV
Subjt:  WCKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKV

Query:  LNLCGCVKATSDTALQV
        LNLCGCVKATSDTALQV
Subjt:  LNLCGCVKATSDTALQV

A0A6J1GXP4 F-box protein SKP2A-like isoform X18.5e-59100Show/hide
Query:  WCKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKV
        WCKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKV
Subjt:  WCKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKV

Query:  LNLCGCVKATSDTALQV
        LNLCGCVKATSDTALQV
Subjt:  LNLCGCVKATSDTALQV

A0A6J1JRD0 F-box protein SKP2A-like6.7e-5696.61Show/hide
Query:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
        WC KNMNNLVLSLVPKFAKLQTLILRQDKPQLAD+A+DTIASYC DLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
Subjt:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK

Query:  VLNLCGCVKATSDTALQV
        VLNLCGCVKATSDTALQV
Subjt:  VLNLCGCVKATSDTALQV

SwissProt top hitse value%identityAlignment
O49286 F-box protein SKP2B2.4e-4270.09Show/hide
Query:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
        WC KNMN+LVLSL PKF KLQTL+LRQDKPQL D+A++ IA++C +LQ LDL KS K++D SLY+LA GC +L KLN+SGCTSFSDTALA+L  +CRKLK
Subjt:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK

Query:  VLNLCGCVKATSDTALQ
        +LNLCGCV+A SD  LQ
Subjt:  VLNLCGCVKATSDTALQ

Q5R3Z8 F-box/LRR-repeat protein 26.0e-0933.33Show/hide
Query:  LADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQV
        + + ++  I+  CR+L+ L+L    +++   + AL  GCR LK L + GCT   D AL ++ +YC +L  LNL  C + T +  +Q+
Subjt:  LADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQV

Q8BH16 F-box/LRR-repeat protein 26.0e-0933.33Show/hide
Query:  LADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQV
        + + ++  I+  CR+L+ L+L    +++   + AL  GCR LK L + GCT   D AL ++ ++C +L  LNL  C + T D  +Q+
Subjt:  LADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQV

Q9LPL4 F-box protein SKP2A6.7e-4574.36Show/hide
Query:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
        WC  NMN+LVLSLVPKF KLQTL LRQDKPQL D+A++ IA++C +LQ LDL KS K++DRSLYALAHGC DL KLN+SGCTSFSDTA+AYL  +CRKLK
Subjt:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK

Query:  VLNLCGCVKATSDTALQ
        VLNLCGCVKA +D AL+
Subjt:  VLNLCGCVKATSDTALQ

Q9UKC9 F-box/LRR-repeat protein 26.0e-0933.33Show/hide
Query:  LADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQV
        + + ++  I+  CR+L+ L+L    +++   + AL  GCR LK L + GCT   D AL ++ +YC +L  LNL  C + T +  +Q+
Subjt:  LADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQV

Arabidopsis top hitse value%identityAlignment
AT1G21410.1 F-box/RNI-like superfamily protein4.8e-4674.36Show/hide
Query:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
        WC  NMN+LVLSLVPKF KLQTL LRQDKPQL D+A++ IA++C +LQ LDL KS K++DRSLYALAHGC DL KLN+SGCTSFSDTA+AYL  +CRKLK
Subjt:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK

Query:  VLNLCGCVKATSDTALQ
        VLNLCGCVKA +D AL+
Subjt:  VLNLCGCVKATSDTALQ

AT1G77000.1 RNI-like superfamily protein1.7e-4370.09Show/hide
Query:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
        WC KNMN+LVLSL PKF KLQTL+LRQDKPQL D+A++ IA++C +LQ LDL KS K++D SLY+LA GC +L KLN+SGCTSFSDTALA+L  +CRKLK
Subjt:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK

Query:  VLNLCGCVKATSDTALQ
        +LNLCGCV+A SD  LQ
Subjt:  VLNLCGCVKATSDTALQ

AT1G77000.2 RNI-like superfamily protein1.7e-4370.09Show/hide
Query:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK
        WC KNMN+LVLSL PKF KLQTL+LRQDKPQL D+A++ IA++C +LQ LDL KS K++D SLY+LA GC +L KLN+SGCTSFSDTALA+L  +CRKLK
Subjt:  WC-KNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLK

Query:  VLNLCGCVKATSDTALQ
        +LNLCGCV+A SD  LQ
Subjt:  VLNLCGCVKATSDTALQ

AT3G58530.1 RNI-like superfamily protein7.2e-1034.09Show/hide
Query:  QLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQV
        +++D+ I+ I S C  L+V  +  + +++D  +  L   CR +  LN+SGC S +D ++  +A     L+ LN+  CVK T D  LQV
Subjt:  QLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVLNLCGCVKATSDTALQV

AT5G23340.1 RNI-like superfamily protein1.1e-1032.38Show/hide
Query:  CKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVL
        CK + +  L+ + +   L   +      +L+D  +  +A  C DL+ L L     ++D SL +L+  CRDL+ L + GCT+ +D+ LA L   CRK+K L
Subjt:  CKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCRKLKVL

Query:  NLCGC
        ++  C
Subjt:  NLCGC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGTAAAGACATTTTGAGGACAGAGGACGTGAAGATGTGGTGCAAGAACATGAACAACTTGGTCCTATCCCTTGTTCCTAAATTTGCAAAACTGCAAACTTTAAT
CTTGCGCCAAGATAAACCCCAGCTTGCAGATGATGCTATTGATACCATTGCTAGTTACTGCCGCGATCTGCAGGTCCTCGACCTGAGAAAAAGTTTCAAGCTCAGTGATC
GTTCCTTGTATGCTCTGGCTCATGGTTGCCGTGATCTTAAAAAGCTTAATATTAGTGGCTGTACTTCATTTAGTGACACTGCATTGGCTTATCTAGCCAGTTACTGCAGA
AAGCTAAAAGTTCTTAATCTTTGTGGCTGCGTTAAGGCTACATCGGACACTGCATTGCAGGTACAATGTACAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGTAAAGACATTTTGAGGACAGAGGACGTGAAGATGTGGTGCAAGAACATGAACAACTTGGTCCTATCCCTTGTTCCTAAATTTGCAAAACTGCAAACTTTAAT
CTTGCGCCAAGATAAACCCCAGCTTGCAGATGATGCTATTGATACCATTGCTAGTTACTGCCGCGATCTGCAGGTCCTCGACCTGAGAAAAAGTTTCAAGCTCAGTGATC
GTTCCTTGTATGCTCTGGCTCATGGTTGCCGTGATCTTAAAAAGCTTAATATTAGTGGCTGTACTTCATTTAGTGACACTGCATTGGCTTATCTAGCCAGTTACTGCAGA
AAGCTAAAAGTTCTTAATCTTTGTGGCTGCGTTAAGGCTACATCGGACACTGCATTGCAGGTACAATGTACAGATTAA
Protein sequenceShow/hide protein sequence
MVGKDILRTEDVKMWCKNMNNLVLSLVPKFAKLQTLILRQDKPQLADDAIDTIASYCRDLQVLDLRKSFKLSDRSLYALAHGCRDLKKLNISGCTSFSDTALAYLASYCR
KLKVLNLCGCVKATSDTALQVQCTD