; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G025280 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G025280
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionF-box protein SKP2A-like
Genome locationCmo_Chr04:18589206..18590644
RNA-Seq ExpressionCmoCh04G025280
SyntenyCmoCh04G025280
Gene Ontology termsGO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001611 - Leucine-rich repeat
IPR006553 - Leucine-rich repeat, cysteine-containing subtype
IPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602148.1 F-box protein SKP2A, partial [Cucurbita argyrosperma subsp. sororia]4.1e-9799.41Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
        +QVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN

Query:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
        DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
Subjt:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH

KAG7032838.1 F-box protein SKP2A, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-9598.24Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
        +QVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAH IKNKPTKWA GKCKN
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN

Query:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
        DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
Subjt:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH

XP_022956400.1 F-box protein SKP2A-like isoform X1 [Cucurbita moschata]4.1e-9799.41Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
        +QVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN

Query:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
        DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
Subjt:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH

XP_022989791.1 F-box protein SKP2A-like [Cucurbita maxima]1.6e-9698.82Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
        +QVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN

Query:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
        DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTC GRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
Subjt:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH

XP_023525237.1 F-box protein SKP2A-like [Cucurbita pepo subsp. pepo]4.1e-9799.41Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
        +QVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN

Query:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
        DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
Subjt:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH

TrEMBL top hitse value%identityAlignment
A0A0A0KFD6 F-box domain-containing protein1.8e-8591.28Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKWAPGKCK
        +Q IGQYCNHLQSVNLGWCENV+DVGVMSLAYGCPDLR LDLCGCVLITD+SVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS IKNKPTKW  GK K
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKWAPGKCK

Query:  NDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTA-AFHHPAH
        ND DGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNL+SVHCACAVQAHR A AF H AH
Subjt:  NDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTA-AFHHPAH

A0A1S3B3Q3 F-box protein SKP2A isoform X14.6e-8691.28Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKWAPGKCK
        +Q IGQYCNHLQSVNLGWCENV+DVGVMSLAYGCPDLR+LDLCGCVLITD+SVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS IKNKPTKW  GK K
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKWAPGKCK

Query:  NDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHR-TAAFHHPAH
        ND DGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHR + AF H AH
Subjt:  NDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHR-TAAFHHPAH

A0A1S3B4E0 F-box protein SKP2A isoform X24.6e-8691.28Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKWAPGKCK
        +Q IGQYCNHLQSVNLGWCENV+DVGVMSLAYGCPDLR+LDLCGCVLITD+SVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS IKNKPTKW  GK K
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKWAPGKCK

Query:  NDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHR-TAAFHHPAH
        ND DGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHR + AF H AH
Subjt:  NDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHR-TAAFHHPAH

A0A6J1GXP4 F-box protein SKP2A-like isoform X12.0e-9799.41Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
        +QVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN

Query:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
        DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
Subjt:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH

A0A6J1JRD0 F-box protein SKP2A-like7.6e-9798.82Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
        +QVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN

Query:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
        DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTC GRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH
Subjt:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH

SwissProt top hitse value%identityAlignment
A6H779 F-box/LRR-repeat protein 26.6e-1332.89Show/hide
Query:  IGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKNDHD
        I  YC+ L S+NL  C  V+D GV+ L  GCP L++L L GC  +TD S+ ALA  CP L+ L    C ++TD     LA               +N HD
Subjt:  IGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKNDHD

Query:  GLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS--GCLNLMSVHC
         L  +++ +C  +T   +  +    P L   S  H  +++  G L+L +  C
Subjt:  GLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMS--GCLNLMSVHC

O49286 F-box protein SKP2B8.1e-7276.3Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKW-APGKC
        +Q IG+ CN LQS+NLGWCEN+SD GVMSLAYGCPDLR+LDLC CVLITD SV+ALAN C HLRSLGLYYC+NITDRAMYSLA S +KNK   W A  K 
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKW-APGKC

Query:  KNDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRT-AAFHHPAH
        K D +GLR+LNISQCT LTP AVQAVCD+FPALHTCSGRHSL+MSGCLNL SVHCAC +QAHRT   + HPAH
Subjt:  KNDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRT-AAFHHPAH

Q5R3Z8 F-box/LRR-repeat protein 22.5e-1230.34Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
        +  +G  C  LQ +    C +++D G   LA  C +L  +DL  C+LITD+++I L+  CP L++L L +C+ ITD  +  L++S            C  
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN

Query:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGC
         H+ LR L +  C  +T  A++        L  C G   L +  C
Subjt:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGC

Q9LPL4 F-box protein SKP2A8.1e-7275.72Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKW-APGKC
        ++ IG  CN +QS+NLGWCEN+SD GVMSLAYGCPDLR+LDLCGCVLITD SV+ALA+ C HLRSLGLYYC+NITDRAMYSLA S +KNKP  W +  K 
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKW-APGKC

Query:  KNDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRT-AAFHHPAH
        K D +GLR+LNISQCTALTP AVQAVCDSFPALHTCSGRHSL+MSGCLNL +VHCAC +QAHR   A  HPAH
Subjt:  KNDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRT-AAFHHPAH

Q9UKC9 F-box/LRR-repeat protein 22.5e-1230.34Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN
        +  +G  C  LQ +    C +++D G   LA  C +L  +DL  C+LITD+++I L+  CP L++L L +C+ ITD  +  L++S            C  
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKN

Query:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGC
         H+ LR L +  C  +T  A++        L  C G   L +  C
Subjt:  DHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGC

Arabidopsis top hitse value%identityAlignment
AT1G21410.1 F-box/RNI-like superfamily protein5.8e-7375.72Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKW-APGKC
        ++ IG  CN +QS+NLGWCEN+SD GVMSLAYGCPDLR+LDLCGCVLITD SV+ALA+ C HLRSLGLYYC+NITDRAMYSLA S +KNKP  W +  K 
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKW-APGKC

Query:  KNDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRT-AAFHHPAH
        K D +GLR+LNISQCTALTP AVQAVCDSFPALHTCSGRHSL+MSGCLNL +VHCAC +QAHR   A  HPAH
Subjt:  KNDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRT-AAFHHPAH

AT1G77000.1 RNI-like superfamily protein5.8e-7376.3Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKW-APGKC
        +Q IG+ CN LQS+NLGWCEN+SD GVMSLAYGCPDLR+LDLC CVLITD SV+ALAN C HLRSLGLYYC+NITDRAMYSLA S +KNK   W A  K 
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKW-APGKC

Query:  KNDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRT-AAFHHPAH
        K D +GLR+LNISQCT LTP AVQAVCD+FPALHTCSGRHSL+MSGCLNL SVHCAC +QAHRT   + HPAH
Subjt:  KNDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRT-AAFHHPAH

AT1G77000.2 RNI-like superfamily protein5.8e-7376.3Show/hide
Query:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKW-APGKC
        +Q IG+ CN LQS+NLGWCEN+SD GVMSLAYGCPDLR+LDLC CVLITD SV+ALAN C HLRSLGLYYC+NITDRAMYSLA S +KNK   W A  K 
Subjt:  MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHS-IKNKPTKW-APGKC

Query:  KNDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRT-AAFHHPAH
        K D +GLR+LNISQCT LTP AVQAVCD+FPALHTCSGRHSL+MSGCLNL SVHCAC +QAHRT   + HPAH
Subjt:  KNDHDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRT-AAFHHPAH

AT5G01720.1 RNI-like superfamily protein2.0e-1242.11Show/hide
Query:  CNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLA
        C  L S+ LG C N++D G+  +  GC +LR LDL   V ITD  +  +A  C HL ++ + YCQ+ITD+++ SL+
Subjt:  CNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLA

AT5G23340.1 RNI-like superfamily protein7.2e-1530.57Show/hide
Query:  IGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKNDHD
        IG+  + LQ +++ +C  +SD G+ ++A GC DLR+L L GC  ITD S+ +L+  C  L +LGL  C NITD  +  L    + K       KC N  D
Subjt:  IGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKNDHD

Query:  ------------GLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNL
                     L+TL +  C  +   ++ ++         C    +LI+ GC ++
Subjt:  ------------GLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGTTATCGGACAATACTGTAATCATTTGCAGTCTGTAAATCTAGGATGGTGTGAGAATGTGAGTGATGTGGGTGTGATGAGTTTGGCGTATGGATGTCCTGATCT
CAGAAGCTTAGATTTGTGTGGCTGTGTCCTAATTACAGATAATAGTGTGATTGCTTTGGCAAATATGTGCCCTCATCTGAGGTCCCTTGGCCTCTACTACTGTCAGAACA
TAACAGACAGAGCTATGTACTCTTTGGCCCATAGCATAAAGAACAAGCCTACAAAATGGGCACCTGGGAAATGCAAGAACGATCACGATGGACTTCGAACACTTAACATT
AGTCAATGCACAGCTCTTACTCCCCCCGCCGTCCAGGCAGTTTGTGATTCGTTTCCAGCGCTTCACACCTGCTCGGGTCGCCATTCTCTCATCATGAGTGGCTGTCTAAA
TTTGATGTCTGTGCATTGTGCTTGTGCAGTCCAAGCTCACCGCACTGCTGCTTTTCATCATCCGGCTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGTTATCGGACAATACTGTAATCATTTGCAGTCTGTAAATCTAGGATGGTGTGAGAATGTGAGTGATGTGGGTGTGATGAGTTTGGCGTATGGATGTCCTGATCT
CAGAAGCTTAGATTTGTGTGGCTGTGTCCTAATTACAGATAATAGTGTGATTGCTTTGGCAAATATGTGCCCTCATCTGAGGTCCCTTGGCCTCTACTACTGTCAGAACA
TAACAGACAGAGCTATGTACTCTTTGGCCCATAGCATAAAGAACAAGCCTACAAAATGGGCACCTGGGAAATGCAAGAACGATCACGATGGACTTCGAACACTTAACATT
AGTCAATGCACAGCTCTTACTCCCCCCGCCGTCCAGGCAGTTTGTGATTCGTTTCCAGCGCTTCACACCTGCTCGGGTCGCCATTCTCTCATCATGAGTGGCTGTCTAAA
TTTGATGTCTGTGCATTGTGCTTGTGCAGTCCAAGCTCACCGCACTGCTGCTTTTCATCATCCGGCTCATTGA
Protein sequenceShow/hide protein sequence
MQVIGQYCNHLQSVNLGWCENVSDVGVMSLAYGCPDLRSLDLCGCVLITDNSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSIKNKPTKWAPGKCKNDHDGLRTLNI
SQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRTAAFHHPAH