CuGenDBv2

Gene ID	CmoCh04G025450
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	glycolipid transfer protein 3-like isoform X2
Genome location	Cmo_Chr04:18676348..18676732
RNA-Seq Expression	CmoCh04G025450
Synteny	CmoCh04G025450
Gene Ontology terms	GO:0120009 - intermembrane lipid transfer (biological process) GO:0005737 - cytoplasm (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0120013 - lipid transfer activity (molecular function)
InterPro domains	IPR014830 - Glycolipid transfer protein domain IPR036497 - Glycolipid transfer protein superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6602162.1 Glycolipid transfer protein 3, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-25

100

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Query:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
        MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
Subjt:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ

KAG7032853.1 Glycolipid transfer protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-25

100

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Query:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
        MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
Subjt:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ

XP_022923457.1 glycolipid transfer protein 3-like isoform X1 [Cucurbita moschata]

1.3e-25

100

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Query:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
        MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
Subjt:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ

XP_022923464.1 glycolipid transfer protein 3-like isoform X2 [Cucurbita moschata]

1.3e-25

100

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Query:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
        MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
Subjt:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ

XP_023546404.1 glycolipid transfer protein 3-like isoform X1 [Cucurbita pepo subsp. pepo]

1.1e-24

98.44

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Query:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
        MKRKRAAEMESEMRSATAQLSVD AAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
Subjt:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ

TrEMBL top hits

e value

%identity

Alignment

A0A6J1E660 glycolipid transfer protein 3-like isoform X1

6.3e-26

100

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Query:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
        MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
Subjt:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ

A0A6J1E6H1 glycolipid transfer protein 3-like isoform X2

6.3e-26

100

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Query:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
        MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
Subjt:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ

A0A6J1JGT9 glycolipid transfer protein 3-like isoform X1

1.0e-23

93.75

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Query:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
        MKRKRAAEMESEMRSATAQL+VDHAAPDIPTKPFLSLC +ILRFLDKVGPTMAVLRQDIH+NIQ
Subjt:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ

A0A6J1JRD9 glycolipid transfer protein 3-like isoform X2

1.0e-23

93.75

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Query:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
        MKRKRAAEMESEMRSATAQL+VDHAAPDIPTKPFLSLC +ILRFLDKVGPTMAVLRQDIH+NIQ
Subjt:  MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ

A0A6J1JXP9 glycolipid transfer protein 3-like isoform X2

4.9e-18

74.65

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Query:  MKRKRAAEMESEMRSATAQLS-------VDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
        MKRKR  E E EMRSATA+LS       VDHAA DIPTKPFLS+C++IL+FLDKVGPTM VLRQDIHQNIQ
Subjt:  MKRKRAAEMESEMRSATAQLS-------VDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ

SwissProt top hits

e value

%identity

Alignment

Q6NLQ3 Glycolipid transfer protein 2

2.6e-08

51.32

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Query:  MKRKRAAEME----SEMRSATAQLSV--------DHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
        MKRKR  EME    +E+++A  +LSV           A  IP +P LS C +I++ LDK+GPTMAVLRQDI QNIQ
Subjt:  MKRKRAAEME----SEMRSATAQLSV--------DHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ

Q9LU33 Glycolipid transfer protein 3

4.9e-07

45.35

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Query:  MKRKRAAEME--------SEMRSATAQLSVDHAAP--------------DIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
        MKRKR  EME        +E+ SA  +LSV   A               ++P KP LS C +I++ LDK+GPTMAVLR DI QNIQ
Subjt:  MKRKRAAEME--------SEMRSATAQLSVDHAAP--------------DIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G21360.1 glycolipid transfer protein 2

1.8e-09

51.32

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Query:  MKRKRAAEME----SEMRSATAQLSV--------DHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
        MKRKR  EME    +E+++A  +LSV           A  IP +P LS C +I++ LDK+GPTMAVLRQDI QNIQ
Subjt:  MKRKRAAEME----SEMRSATAQLSV--------DHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ

AT3G21260.3 Glycolipid transfer protein (GLTP) family protein

3.5e-08

45.35

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Query:  MKRKRAAEME--------SEMRSATAQLSVDHAAP--------------DIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ
        MKRKR  EME        +E+ SA  +LSV   A               ++P KP LS C +I++ LDK+GPTMAVLR DI QNIQ
Subjt:  MKRKRAAEME--------SEMRSATAQLSVDHAAP--------------DIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQ

Sequences

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CDS sequence

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ATGAAGAGGAAGAGAGCAGCGGAAATGGAGTCAGAAATGAGGTCTGCAACGGCGCAGCTTTCGGTGGATCATGCCGCTCCCGACATACCCACCAAGCCCTTTCTTTCTCT
TTGCTATGTGATCCTTCGATTTCTGGATAAGGTAGGGCCGACAATGGCGGTTCTCCGACAGGACATTCATCAGAACATTCAGGTAGAAACAGAGCATTAA

mRNA sequence

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AGGAAAGTGATAATTGAGGTCAACAATTTCTCAAGTTTCAGAGCTTTCTTTTCTGAGCTGCAGAAGGGTTTTGATTTGATACATGAAGAGGAAGAGAGCAGCGGAAATGG
AGTCAGAAATGAGGTCTGCAACGGCGCAGCTTTCGGTGGATCATGCCGCTCCCGACATACCCACCAAGCCCTTTCTTTCTCTTTGCTATGTGATCCTTCGATTTCTGGAT
AAGGTAGGGCCGACAATGGCGGTTCTCCGACAGGACATTCATCAGAACATTCAGGTAGAAACAGAGCATTAA

Protein sequence

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MKRKRAAEMESEMRSATAQLSVDHAAPDIPTKPFLSLCYVILRFLDKVGPTMAVLRQDIHQNIQVETEH

CmoCh04G025450 (gene) of Cucurbita moschata (Rifu) v1 genome