; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G025470 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G025470
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein MKS1-like
Genome locationCmo_Chr04:18683438..18683911
RNA-Seq ExpressionCmoCh04G025470
SyntenyCmoCh04G025470
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578908.1 Protein MKS1, partial [Cucurbita argyrosperma subsp. sororia]3.0e-3358.9Show/hide
Query:  MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCF
        MAERK LQL G RP+ALKI+K SH I KPP   HRPVIIYT SPK+IHT+PTQFKDLVQRLTG +P + D H   + T+ M      S+  QG E VG  
Subjt:  MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCF

Query:  PTGILPPTSELLLPI-----MPMPPSASTDLSSLTHYFQD-SSIAPNNFASSLDFFDNFPHFH
          GIL PT  LL PI      P PP  S +LS LTH+F+D S IAPN F+SSLDFF NFP  H
Subjt:  PTGILPPTSELLLPI-----MPMPPSASTDLSSLTHYFQD-SSIAPNNFASSLDFFDNFPHFH

KAG6602164.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.9e-7390.8Show/hide
Query:  MAERKHLQLHGHRPSALKISKHSHNIEK------PPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGV
        MAERKHLQLHGHRPSALKISKHSHNI+K      PPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQ DTPDIHQVQSKTISMSMSMPTSSTEQGV
Subjt:  MAERKHLQLHGHRPSALKISKHSHNIEK------PPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGV

Query:  ESVGCFPTGILPPTSELLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH
        ESVG FPTGILPPTSELL PIMP  PS S DLSSLTHYFQDSSIAPNNFASSLDFFDNFP FH
Subjt:  ESVGCFPTGILPPTSELLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH

KAG7032856.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.2e-7290.74Show/hide
Query:  MAERKHLQLHGHRPSALKISKHSHNIEK-----PPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVE
        MAERKHLQLHGHRPSALKISKHSHNI+K     PPP QHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQ DTPDIHQVQSKTISMSMSMPTSSTEQGVE
Subjt:  MAERKHLQLHGHRPSALKISKHSHNIEK-----PPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVE

Query:  SVGCFPTGILPPTSELLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH
        SVG FPTGILPPTSELL PIMP  PS S DLSSLTHYFQDSSIAPNNFASSLDFFDNFP FH
Subjt:  SVGCFPTGILPPTSELLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH

XP_022959576.1 protein MKS1-like [Cucurbita moschata]5.3e-83100Show/hide
Query:  MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCF
        MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCF
Subjt:  MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCF

Query:  PTGILPPTSELLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH
        PTGILPPTSELLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH
Subjt:  PTGILPPTSELLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH

XP_023542758.1 protein MKS1-like [Cucurbita pepo subsp. pepo]3.5e-6685.19Show/hide
Query:  MAERKHLQLHGHRPSALKISKHSHNIEK-----PPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVE
        MAERKHL LHGHRPSALKISKHSHNI+K     PPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTG QP++PDIHQVQSKTISMS SMPTSSTEQGVE
Subjt:  MAERKHLQLHGHRPSALKISKHSHNIEK-----PPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVE

Query:  SVGCFPTGILPPTSELLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH
        S+  FPTGIL PT E L      PPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFP FH
Subjt:  SVGCFPTGILPPTSELLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH

TrEMBL top hitse value%identityAlignment
A0A0A0KI80 VQ domain-containing protein1.1e-2551.41Show/hide
Query:  MAERKHLQLHGHRPSALKISKHSHNIEKP--PPPQ-HRPVIIYTDSPKIIHTNPTQFKDLVQRLTG-CQPDTPDI-------HQVQSKTISMSMSMPTSS
        M E+K LQL G RPSALKI+K SH I+KP  PPPQ HRPVIIYT SPKIIHT+PT+FKDLVQRLTG  QP +          H      IS+  +     
Subjt:  MAERKHLQLHGHRPSALKISKHSHNIEKP--PPPQ-HRPVIIYTDSPKIIHTNPTQFKDLVQRLTG-CQPDTPDI-------HQVQSKTISMSMSMPTSS

Query:  TEQGVESVGCF----PT-GILPPTSELLLPIMPMPPSAST--DLSSLTHYFQD-SSIAPNNFASSLDFF-DNFPHFH
         + GV+ +       PT G+LPP S  +    P  P+A+   DL+SLT +F D S IA N+F+SSLDFF  NFP FH
Subjt:  TEQGVESVGCF----PT-GILPPTSELLLPIMPMPPSAST--DLSSLTHYFQD-SSIAPNNFASSLDFF-DNFPHFH

A0A5A7UZA1 Protein MKS1-like1.9e-2551.69Show/hide
Query:  MAERKHLQLHGHRPSALKISKHSHNIEKP--PPPQ-HRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQ--PDTPDIHQV-----QSKTISMSMSMPTSST
        M E+K LQL G RPSALKI+K SH I+KP  PPPQ HRPVIIYT SPKIIHT+PTQFKDLVQRLTG    P +   H +         IS+ ++      
Subjt:  MAERKHLQLHGHRPSALKISKHSHNIEKP--PPPQ-HRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQ--PDTPDIHQV-----QSKTISMSMSMPTSST

Query:  EQGVESVGCFPTGILPPTSELLLPIMPM-----PPSAST----DLSSLTHYFQD-SSIAPNNFASSLDFF-DNFPHFH
          GV+ +     GIL PT  LL PI P      PP A+     DL+SLT +F D S I  N+F+ SLDFF  NFP FH
Subjt:  EQGVESVGCFPTGILPPTSELLLPIMPM-----PPSAST----DLSSLTHYFQD-SSIAPNNFASSLDFF-DNFPHFH

A0A6J1FKV1 protein MKS1-like7.1e-3358.28Show/hide
Query:  MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCF
        MAERK LQL G RP+ALKI+K SH I KPP   HRPVIIYT SPK+IHT+PTQFKDLVQRLTG +P + D H   + T+ M      S+  QG E VG  
Subjt:  MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCF

Query:  PTGILPPTSELLLPI-----MPMPPSASTDLSSLTHYFQD-SSIAPNNFASSLDFFDNFPHFH
          GIL PT  LL PI      P PP  S +LS LTH+F+D S IAPN F+ SLDFF NFP  H
Subjt:  PTGILPPTSELLLPI-----MPMPPSASTDLSSLTHYFQD-SSIAPNNFASSLDFFDNFPHFH

A0A6J1H588 protein MKS1-like2.6e-83100Show/hide
Query:  MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCF
        MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCF
Subjt:  MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCF

Query:  PTGILPPTSELLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH
        PTGILPPTSELLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH
Subjt:  PTGILPPTSELLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH

A0A6J1JW33 protein MKS1-like2.3e-3156.44Show/hide
Query:  MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCF
        MAERK +QL G RP+ALKI+K SH I KPP   HRPVIIY+ SPK+IHT+PTQFKDLVQRLTG +P + D H   + T+ M      S+   G E VG  
Subjt:  MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCF

Query:  PTGILPPTSELLLPI-----MPMPPSASTDLSSLTHYFQD-SSIAPNNFASSLDFFDNFPHFH
          GIL PT  LL PI      P PP  S +LS LTH+F+D S IAPN F+ SLDFF NFP  H
Subjt:  PTGILPPTSELLLPI-----MPMPPSASTDLSSLTHYFQD-SSIAPNNFASSLDFFDNFPHFH

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B4.6e-0537Show/hide
Query:  GHRPSALKISKHSHNIEKPPP----------------------PQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTS
        G +P+ LK+   SH I K PP                      P   PV IYT +P+IIHT+P  F  LVQRLTG         Q  + T S S S  TS
Subjt:  GHRPSALKISKHSHNIEKPPP----------------------PQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTS

Q8LGD5 Protein MKS13.4e-0842.67Show/hide
Query:  ERKHLQLHGHRPSALKISKHSHNIEKPP----PPQHR----------PVIIYTDSPKIIHTNPTQFKDLVQRLTG
        +++ LQ+ G RPS L + K SH I+KPP    PP +R          PV+IY  SPK++H   ++F ++VQRLTG
Subjt:  ERKHLQLHGHRPSALKISKHSHNIEKPP----PPQHR----------PVIIYTDSPKIIHTNPTQFKDLVQRLTG

Q9CA36 VQ motif-containing protein 8, chloroplastic6.5e-0750Show/hide
Query:  QLHGHRPSALKISKHSHNIEK------PPPPQHR--PVIIYTDSPKIIHTNPTQFKDLVQRLTG
        +++G RPS+LK++  SH I+K       P P  R  PVIIY  SPK+IHT    F  LVQRLTG
Subjt:  QLHGHRPSALKISKHSHNIEK------PPPPQHR--PVIIYTDSPKIIHTNPTQFKDLVQRLTG

Q9LS54 VQ motif-containing protein 202.6e-0841.57Show/hide
Query:  PSALKISKHSHNIEKPPPPQ--------HRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQS-------KTISMSMSMPT
        P  LK++K SH I+KPP P           PVIIYT +P+IIHTNP  F  LVQ+LTG      D+    +       K+I+ ++S PT
Subjt:  PSALKISKHSHNIEKPPPPQ--------HRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQS-------KTISMSMSMPT

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding3.3e-0637Show/hide
Query:  GHRPSALKISKHSHNIEKPPP----------------------PQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTS
        G +P+ LK+   SH I K PP                      P   PV IYT +P+IIHT+P  F  LVQRLTG         Q  + T S S S  TS
Subjt:  GHRPSALKISKHSHNIEKPPP----------------------PQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTS

AT1G21326.1 VQ motif-containing protein6.7e-0738.61Show/hide
Query:  GHRPSALKISKHSHNIEKPPP----------------------PQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTS
        G RP  LK+   SH I K PP                      P   PVIIYT SP+IIHT+P  F  LVQRLTG         +  + T S S S  TS
Subjt:  GHRPSALKISKHSHNIEKPPP----------------------PQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTS

Query:  S
        +
Subjt:  S

AT1G68450.1 VQ motif-containing protein4.6e-0850Show/hide
Query:  QLHGHRPSALKISKHSHNIEK------PPPPQHR--PVIIYTDSPKIIHTNPTQFKDLVQRLTG
        +++G RPS+LK++  SH I+K       P P  R  PVIIY  SPK+IHT    F  LVQRLTG
Subjt:  QLHGHRPSALKISKHSHNIEK------PPPPQHR--PVIIYTDSPKIIHTNPTQFKDLVQRLTG

AT3G18360.1 VQ motif-containing protein1.9e-0941.57Show/hide
Query:  PSALKISKHSHNIEKPPPPQ--------HRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQS-------KTISMSMSMPT
        P  LK++K SH I+KPP P           PVIIYT +P+IIHTNP  F  LVQ+LTG      D+    +       K+I+ ++S PT
Subjt:  PSALKISKHSHNIEKPPPPQ--------HRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQS-------KTISMSMSMPT

AT3G18690.1 MAP kinase substrate 12.4e-0942.67Show/hide
Query:  ERKHLQLHGHRPSALKISKHSHNIEKPP----PPQHR----------PVIIYTDSPKIIHTNPTQFKDLVQRLTG
        +++ LQ+ G RPS L + K SH I+KPP    PP +R          PV+IY  SPK++H   ++F ++VQRLTG
Subjt:  ERKHLQLHGHRPSALKISKHSHNIEKPP----PPQHR----------PVIIYTDSPKIIHTNPTQFKDLVQRLTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAAAGAAAACACCTTCAACTCCATGGCCACCGCCCCTCCGCCCTCAAAATCTCCAAACACTCCCACAATATCGAAAAGCCGCCGCCGCCGCAGCACCGCCCCGT
CATAATCTACACCGACTCCCCCAAGATCATCCACACCAATCCTACCCAATTTAAGGACTTAGTCCAACGCCTCACTGGCTGCCAACCTGATACTCCTGACATTCATCAGG
TCCAATCCAAGACAATATCAATGTCTATGTCGATGCCAACGAGTAGTACCGAACAAGGAGTCGAGAGTGTAGGTTGTTTCCCAACTGGGATATTACCTCCGACGTCGGAG
TTGCTACTACCCATTATGCCAATGCCGCCATCGGCGTCAACGGATCTCAGCTCTCTCACCCACTACTTCCAAGACAGCTCCATAGCTCCTAATAATTTTGCATCGTCGCT
AGATTTCTTCGATAACTTCCCTCATTTTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAAAGAAAACACCTTCAACTCCATGGCCACCGCCCCTCCGCCCTCAAAATCTCCAAACACTCCCACAATATCGAAAAGCCGCCGCCGCCGCAGCACCGCCCCGT
CATAATCTACACCGACTCCCCCAAGATCATCCACACCAATCCTACCCAATTTAAGGACTTAGTCCAACGCCTCACTGGCTGCCAACCTGATACTCCTGACATTCATCAGG
TCCAATCCAAGACAATATCAATGTCTATGTCGATGCCAACGAGTAGTACCGAACAAGGAGTCGAGAGTGTAGGTTGTTTCCCAACTGGGATATTACCTCCGACGTCGGAG
TTGCTACTACCCATTATGCCAATGCCGCCATCGGCGTCAACGGATCTCAGCTCTCTCACCCACTACTTCCAAGACAGCTCCATAGCTCCTAATAATTTTGCATCGTCGCT
AGATTTCTTCGATAACTTCCCTCATTTTCATTAA
Protein sequenceShow/hide protein sequence
MAERKHLQLHGHRPSALKISKHSHNIEKPPPPQHRPVIIYTDSPKIIHTNPTQFKDLVQRLTGCQPDTPDIHQVQSKTISMSMSMPTSSTEQGVESVGCFPTGILPPTSE
LLLPIMPMPPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPHFH