; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G025480 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G025480
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionextensin-like
Genome locationCmo_Chr04:18685046..18685483
RNA-Seq ExpressionCmoCh04G025480
SyntenyCmoCh04G025480
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058916.1 hypothetical protein E6C27_scaffold98G00840 [Cucumis melo var. makuwa]1.3e-1145.95Show/hide
Query:  SSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPP------DPLDSPVLSPRTPQSPPQPD
        SS  +PP +  +  LQIS  SR+IKKPPLP   A P   ++KY+++P+II+V+TP +FKYIVQLLTG PN PPP      D  D+         +P QPD
Subjt:  SSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPP------DPLDSPVLSPRTPQSPPQPD

Query:  PVDESVLNPPP
           + +L+P P
Subjt:  PVDESVLNPPP

KAE8647157.1 hypothetical protein Csa_018820, partial [Cucumis sativus]1.2e-0744.88Show/hide
Query:  YPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPDPVDESVLNPP
        YP  +  +Q LQISK S++IKKPPL P          KY++ PKII+VKT  +F YIVQLLTG PNHPPP          R   SPP  D        PP
Subjt:  YPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPDPVDESVLNPP

Query:  PCEEISIYDYDWEEPSYPIPIPPANFK
        P   + +Y      PS P P  P NFK
Subjt:  PCEEISIYDYDWEEPSYPIPIPPANFK

KAG6602166.1 hypothetical protein SDJN03_07399, partial [Cucurbita argyrosperma subsp. sororia]1.0e-7295.86Show/hide
Query:  MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPD
        MGSSRFSSGFYPPEKWVEQPLQISKYSRSI KPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPD LDSPVLSP  PQSPP+PD
Subjt:  MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPD

Query:  PVDESVLNPPPCEEISIYDYDWEEPSYPIPIPPANFKNITSSYYP
        PVD+SVLNPPPCEEISIYDYDWEEPSYPIPIPPANFKNITSSYYP
Subjt:  PVDESVLNPPPCEEISIYDYDWEEPSYPIPIPPANFKNITSSYYP

XP_022959600.1 extensin-like [Cucurbita moschata]1.5e-76100Show/hide
Query:  MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPD
        MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPD
Subjt:  MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPD

Query:  PVDESVLNPPPCEEISIYDYDWEEPSYPIPIPPANFKNITSSYYP
        PVDESVLNPPPCEEISIYDYDWEEPSYPIPIPPANFKNITSSYYP
Subjt:  PVDESVLNPPPCEEISIYDYDWEEPSYPIPIPPANFKNITSSYYP

XP_038885909.1 extensin-like [Benincasa hispida]1.9e-1039.86Show/hide
Query:  SSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSA--IPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPD-PLDSPVLSPRTPQSPPQPDPVD
        SS   PP +  ++  QIS  SR IKKPP PP +A       +++Y+ +PKII V+TP +FKYIVQLLTG PN PPP  P  S    P+ P   PQ     
Subjt:  SSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSA--IPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPD-PLDSPVLSPRTPQSPPQPDPVD

Query:  ESVLNPPPCE-EISIYDYDW-----EEPSYPIPIPPAN
          +L+P P    + +Y   +       P  P+P+PP++
Subjt:  ESVLNPPPCE-EISIYDYDW-----EEPSYPIPIPPAN

TrEMBL top hitse value%identityAlignment
A0A0A0KCP3 Uncharacterized protein2.5e-0841.13Show/hide
Query:  YPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPP-DPLDSPV----LSPRTPQSPPQPDPVDES
        YP  +  +Q LQISK S++IKKPPL P          KY++ PKII+VKT  +F YIVQLLTG PNHPPP  P +       LSP      P P     S
Subjt:  YPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPP-DPLDSPV----LSPRTPQSPPQPDPVDES

Query:  VLNPPPCEEISIYDYDWEEPSYP-IPIPPANFKNITSSYYP
        +LNPP              PS P   +PP+ F+ + +   P
Subjt:  VLNPPPCEEISIYDYDWEEPSYP-IPIPPANFKNITSSYYP

A0A151TGT1 Protein MKS14.5e-0555.93Show/hide
Query:  PLQISKYSRSIKKPPLPPSSA----IPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGS
        PL+I+K S  IKKPPLPP ++     PRQ II Y V PK+IH  TP +F  +VQ LTGS
Subjt:  PLQISKYSRSIKKPPLPPSSA----IPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGS

A0A2K3JMU5 VQ domain-containing protein (Fragment)4.5e-0559.65Show/hide
Query:  PLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPN
        PL+I+K S  IKKPPL P + I RQ +I Y V PKIIH  TP EF  +VQ LTGS N
Subjt:  PLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPN

A0A5A7UXK4 Uncharacterized protein6.4e-1245.95Show/hide
Query:  SSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPP------DPLDSPVLSPRTPQSPPQPD
        SS  +PP +  +  LQIS  SR+IKKPPLP   A P   ++KY+++P+II+V+TP +FKYIVQLLTG PN PPP      D  D+         +P QPD
Subjt:  SSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPP------DPLDSPVLSPRTPQSPPQPD

Query:  PVDESVLNPPP
           + +L+P P
Subjt:  PVDESVLNPPP

A0A6J1H6R4 extensin-like7.4e-77100Show/hide
Query:  MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPD
        MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPD
Subjt:  MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPD

Query:  PVDESVLNPPPCEEISIYDYDWEEPSYPIPIPPANFKNITSSYYP
        PVDESVLNPPPCEEISIYDYDWEEPSYPIPIPPANFKNITSSYYP
Subjt:  PVDESVLNPPPCEEISIYDYDWEEPSYPIPIPPANFKNITSSYYP

SwissProt top hitse value%identityAlignment
Q8LGD5 Protein MKS18.1e-0441.27Show/hide
Query:  PLQISKYSRSIKKPPLPPSSA---------IPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTG
        PL + K S  IKKPP  P+           IPR+ ++ Y V PK++H  T +EF  +VQ LTG
Subjt:  PLQISKYSRSIKKPPLPPSSA---------IPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTG

Arabidopsis top hitse value%identityAlignment
AT3G18690.1 MAP kinase substrate 15.7e-0541.27Show/hide
Query:  PLQISKYSRSIKKPPLPPSSA---------IPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTG
        PL + K S  IKKPP  P+           IPR+ ++ Y V PK++H  T +EF  +VQ LTG
Subjt:  PLQISKYSRSIKKPPLPPSSA---------IPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTTCAAGATTTTCTTCCGGCTTCTACCCACCGGAAAAATGGGTGGAGCAACCACTCCAAATCTCCAAGTACTCCCGGAGTATCAAGAAACCGCCGCTGCCGCC
GTCTTCCGCCATTCCCCGCCAGGCGATCATAAAGTACAAGGTGAAGCCGAAGATCATTCACGTGAAAACCCCCGCTGAATTCAAGTACATTGTCCAACTTCTCACCGGCA
GCCCCAATCATCCGCCGCCCGATCCTCTTGATTCACCTGTACTCAGTCCTCGGACGCCGCAGTCGCCGCCGCAGCCTGACCCTGTTGATGAATCTGTCCTCAATCCGCCG
CCGTGTGAAGAAATCAGCATTTATGATTATGACTGGGAGGAGCCTTCATACCCAATTCCTATTCCTCCTGCCAATTTCAAGAACATTACATCCTCTTACTATCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTTCAAGATTTTCTTCCGGCTTCTACCCACCGGAAAAATGGGTGGAGCAACCACTCCAAATCTCCAAGTACTCCCGGAGTATCAAGAAACCGCCGCTGCCGCC
GTCTTCCGCCATTCCCCGCCAGGCGATCATAAAGTACAAGGTGAAGCCGAAGATCATTCACGTGAAAACCCCCGCTGAATTCAAGTACATTGTCCAACTTCTCACCGGCA
GCCCCAATCATCCGCCGCCCGATCCTCTTGATTCACCTGTACTCAGTCCTCGGACGCCGCAGTCGCCGCCGCAGCCTGACCCTGTTGATGAATCTGTCCTCAATCCGCCG
CCGTGTGAAGAAATCAGCATTTATGATTATGACTGGGAGGAGCCTTCATACCCAATTCCTATTCCTCCTGCCAATTTCAAGAACATTACATCCTCTTACTATCCTTAG
Protein sequenceShow/hide protein sequence
MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPDPVDESVLNPP
PCEEISIYDYDWEEPSYPIPIPPANFKNITSSYYP