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CmoCh04G025530 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G025530
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
Genome locationCmo_Chr04:18709159..18712018
RNA-Seq ExpressionCmoCh04G025530
SyntenyCmoCh04G025530
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578902.1 hypothetical protein SDJN03_23350, partial [Cucurbita argyrosperma subsp. sororia]2.2e-0545.26Show/hide
Query:  AMGSLLLASHLLSLLIAFLSLHLPSQLAAAARYNIHPYQYQLPPPSSPPPPPENLSSPPPPKKQYKWWRSLLQRRPTPKLPWPIKATRKSPPPPF
        AMGSL+  S+   LLI F+SL+LPS+L A          Y + PP  PPPP  +  +PPP KK+YK+        P P  PWPI+   KSPPPP+
Subjt:  AMGSLLLASHLLSLLIAFLSLHLPSQLAAAARYNIHPYQYQLPPPSSPPPPPENLSSPPPPKKQYKWWRSLLQRRPTPKLPWPIKATRKSPPPPF

KAG6602171.1 hypothetical protein SDJN03_07404, partial [Cucurbita argyrosperma subsp. sororia]2.3e-4298.94Show/hide
Query:  MGSLLLASHLLSLLIAFLSLHLPSQLAAAARYNIHPYQYQLPPPSSPPPPPENLSSPPPPKKQYKWWRSLLQRRPTPKLPWPIKATRKSPPPPF
        MGSLLLASHLLSLLIAFLSLHLPSQLAAAARYNIHPYQYQLPPPSSPPPPPENLSSPPPPKKQYKWWRSLLQRRP PKLPWPIKATRKSPPPPF
Subjt:  MGSLLLASHLLSLLIAFLSLHLPSQLAAAARYNIHPYQYQLPPPSSPPPPPENLSSPPPPKKQYKWWRSLLQRRPTPKLPWPIKATRKSPPPPF

KAG6602173.1 hypothetical protein SDJN03_07406, partial [Cucurbita argyrosperma subsp. sororia]3.7e-2985.26Show/hide
Query:  MGSLLLASHLLSLLIAF-LSLHLPSQLAAAARYNIHPYQYQLPPPSSPPPPPENLSSPPPPKKQYKWWRSLLQRRPTPKLPWPIKATRKSPPPPF
        MGSLLLASHLLSLLIAF LSLHLPSQLAAAA YNIHPYQYQ PPPSSPPPPPE LSSPPPPK QYK  RSLLQRR     PWP +ATRKSPPPPF
Subjt:  MGSLLLASHLLSLLIAF-LSLHLPSQLAAAARYNIHPYQYQLPPPSSPPPPPENLSSPPPPKKQYKWWRSLLQRRPTPKLPWPIKATRKSPPPPF

KAG6602174.1 hypothetical protein SDJN03_07407, partial [Cucurbita argyrosperma subsp. sororia]4.0e-0758.33Show/hide
Query:  SYQVISLPLLSASLIVQSSPIKNLHYYSLSSLRHKNTLTLSSSETSSSLASTPPVLQAPWPPIYLPPSPPPP
        S   + L +L+ASLIV SSPIKNLH YS   L HK+T++ SSSET SSL S+  + Q PW P  LP SPPPP
Subjt:  SYQVISLPLLSASLIVQSSPIKNLHYYSLSSLRHKNTLTLSSSETSSSLASTPPVLQAPWPPIYLPPSPPPP

XP_028183150.1 extensin-3-like [Glycine soja]1.7e-0542.57Show/hide
Query:  STPPVLQAPWPPIYLPPSPPPP---AMGSLLLASHLLSLLIAFLSLHLPSQLAA-----------AARYNIH---------PYQYQLPPP-----SSPPP
        S PP + +P PP Y+  SPPPP    MGS L+AS  L+L++A LSL LPSQ +A              YN H         PY+Y  PPP      SPPP
Subjt:  STPPVLQAPWPPIYLPPSPPPP---AMGSLLLASHLLSLLIAFLSLHLPSQLAA-----------AARYNIH---------PYQYQLPPP-----SSPPP

Query:  PPENLSSPPPPKKQYKWWRSLLQRRPTP----KLPWPIKATRKSPPPP
        P +  S PPPPKK YK+        P P    K P P     KSPPPP
Subjt:  PPENLSSPPPPKKQYKWWRSLLQRRPTP----KLPWPIKATRKSPPPP

TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCCAAATTGAGATATCTTACCAAGTAATTTCACTACCTCTTCTATCAGCATCCCTCATTGTCCAATCTTCTCCCATAAAAAACCTTCATTATTATTCACTGTCATC
TCTTCGTCACAAAAATACTCTTACGCTATCGTCAAGTGAAACGTCCTCATCGTTGGCATCGACACCGCCCGTCCTTCAAGCACCATGGCCTCCCATATACCTCCCACCTT
CGCCACCGCCCCCGGCAATGGGATCTCTATTATTGGCCTCTCACCTTCTATCTCTTCTCATTGCTTTTCTCTCTTTACATCTCCCATCACAATTGGCTGCTGCTGCACGT
TACAACATTCACCCATATCAATACCAACTTCCTCCGCCGTCTTCGCCGCCGCCTCCGCCTGAAAATCTCTCCTCTCCACCGCCACCCAAGAAGCAATACAAATGGTGGAG
GTCACTGCTGCAGAGGCGACCGACACCTAAGTTGCCATGGCCAATAAAGGCCACCCGTAAATCGCCTCCGCCGCCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCCAAATTGAGATATCTTACCAAGTAATTTCACTACCTCTTCTATCAGCATCCCTCATTGTCCAATCTTCTCCCATAAAAAACCTTCATTATTATTCACTGTCATC
TCTTCGTCACAAAAATACTCTTACGCTATCGTCAAGTGAAACGTCCTCATCGTTGGCATCGACACCGCCCGTCCTTCAAGCACCATGGCCTCCCATATACCTCCCACCTT
CGCCACCGCCCCCGGCAATGGGATCTCTATTATTGGCCTCTCACCTTCTATCTCTTCTCATTGCTTTTCTCTCTTTACATCTCCCATCACAATTGGCTGCTGCTGCACGT
TACAACATTCACCCATATCAATACCAACTTCCTCCGCCGTCTTCGCCGCCGCCTCCGCCTGAAAATCTCTCCTCTCCACCGCCACCCAAGAAGCAATACAAATGGTGGAG
GTCACTGCTGCAGAGGCGACCGACACCTAAGTTGCCATGGCCAATAAAGGCCACCCGTAAATCGCCTCCGCCGCCTTTCTAA
Protein sequenceShow/hide protein sequence
MPQIEISYQVISLPLLSASLIVQSSPIKNLHYYSLSSLRHKNTLTLSSSETSSSLASTPPVLQAPWPPIYLPPSPPPPAMGSLLLASHLLSLLIAFLSLHLPSQLAAAAR
YNIHPYQYQLPPPSSPPPPPENLSSPPPPKKQYKWWRSLLQRRPTPKLPWPIKATRKSPPPPF