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CmoCh04G025540 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G025540
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionextensin-like
Genome locationCmo_Chr04:18720361..18720639
RNA-Seq ExpressionCmoCh04G025540
SyntenyCmoCh04G025540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602171.1 hypothetical protein SDJN03_07404, partial [Cucurbita argyrosperma subsp. sororia]1.9e-2785.11Show/hide
Query:  MGSLLLASHLLSLLIASLSLHLPSQL-ATAHYYIHPYQYQLPPPSSPPPPPENLSSPPPPKKQYK-LRSLLQRRMPRIRPWPRRATRKSPPPPF
        MGSLLLASHLLSLLIA LSLHLPSQL A A Y IHPYQYQLPPPSSPPPPPENLSSPPPPKKQYK  RSLLQRR     PWP +ATRKSPPPPF
Subjt:  MGSLLLASHLLSLLIASLSLHLPSQL-ATAHYYIHPYQYQLPPPSSPPPPPENLSSPPPPKKQYK-LRSLLQRRMPRIRPWPRRATRKSPPPPF

KAG6602173.1 hypothetical protein SDJN03_07406, partial [Cucurbita argyrosperma subsp. sororia]1.5e-3291.49Show/hide
Query:  MGSLLLASHLLSLLIA-SLSLHLPSQL-ATAHYYIHPYQYQLPPPSSPPPPPENLSSPPPPKKQYKLRSLLQRRMPRIRPWPRRATRKSPPPPF
        MGSLLLASHLLSLLIA  LSLHLPSQL A AHY IHPYQYQ PPPSSPPPPPE LSSPPPPK QYKLRSLLQRRMPRIRPWPRRATRKSPPPPF
Subjt:  MGSLLLASHLLSLLIA-SLSLHLPSQL-ATAHYYIHPYQYQLPPPSSPPPPPENLSSPPPPKKQYKLRSLLQRRMPRIRPWPRRATRKSPPPPF

XP_022939147.1 extensin-like [Cucurbita moschata]4.0e-0646.79Show/hide
Query:  MGSLLLAS-HLLSLLIASLSLHLPSQLATAHYY----IHPYQYQLPPPSSPP--------PPPENLSS----PPPPKKQYKLRSLLQRRMPRIRPWPRRA
        MGSL+L+S +L SLLIA LSL LPS+LA    +     +P+QYQ PPP  PP        PPP   +     PPPPK ++K ++    RMP   PW R+ 
Subjt:  MGSLLLAS-HLLSLLIASLSLHLPSQLATAHYY----IHPYQYQLPPPSSPP--------PPPENLSS----PPPPKKQYKLRSLLQRRMPRIRPWPRRA

Query:  TRKSPPPPF
        T  SPPPPF
Subjt:  TRKSPPPPF

XP_022993352.1 extensin-like [Cucurbita maxima]6.9e-0648.54Show/hide
Query:  MGSLLLAS-HLLSLLIASLSLHLPSQLATAHYY----IHPYQYQLPPP----SSPPPPPENLS--SPPPPKKQYKLRSLLQRRMPRIRPWPRRATRKSPP
        MGSL+LAS +L SLLIA LSL LPS+LA    +     +P++YQ PPP      P PPP   +  +PPPPK ++K ++    RMP   PW R+ T  SPP
Subjt:  MGSLLLAS-HLLSLLIASLSLHLPSQLATAHYY----IHPYQYQLPPP----SSPPPPPENLS--SPPPPKKQYKLRSLLQRRMPRIRPWPRRATRKSPP

Query:  PPF
        PPF
Subjt:  PPF

XP_023551507.1 extensin-3-like [Cucurbita pepo subsp. pepo]9.0e-0647.22Show/hide
Query:  MGSLLLAS-HLLSLLIASLSLHLPSQLATAHYY----IHPYQYQLPPPSSPP--------PPPE---NLSSPPPPKKQYKLRSLLQRRMPRIRPWPRRAT
        MGSL+L S +L SLLIA LSL LPS+LA    +     +P+QYQ PPP  PP        PPP     L+ PPPPK ++K +       P   PW R+ T
Subjt:  MGSLLLAS-HLLSLLIASLSLHLPSQLATAHYY----IHPYQYQLPPPSSPP--------PPPE---NLSSPPPPKKQYKLRSLLQRRMPRIRPWPRRAT

Query:  RKSPPPPF
         KSPPPPF
Subjt:  RKSPPPPF

TrEMBL top hitse value%identityAlignment
A0A0A0KI69 Uncharacterized protein1.3e-0553.47Show/hide
Query:  MGSLLLASHLLSLLIASLSLHLPSQLATAHYYIHP------YQYQLPP-PSSPPPPPENLSSPPPPKKQYKLRSL--LQRRMPRIRPWPRRATRKSPPPP
        MG   LAS+L SLLIA   L+LPS+L TAH YIH       Y+Y  PP P  PPPP     +PPP KKQ KL+ L  L    P+ + WPRR T KSPPPP
Subjt:  MGSLLLASHLLSLLIASLSLHLPSQLATAHYYIHP------YQYQLPP-PSSPPPPPENLSSPPPPKKQYKLRSL--LQRRMPRIRPWPRRATRKSPPPP

Query:  F
        F
Subjt:  F

A0A5A7UW72 Uncharacterized protein6.3e-0552Show/hide
Query:  MGSLLLASHLLSLLIASLSLHLPSQLATAHYYIHP------YQYQLPPPSSPPPPPE-NLSSPPPPKKQYKLRSLLQ-RRMPRIRPWPRRATRKSPPPPF
        MG   LAS+L SLLIA   L+LP++L TAH YIH       Y Y  PP   PPPPP     +PPP KKQ KL+ L      P +  WPRR T KSPPPPF
Subjt:  MGSLLLASHLLSLLIASLSLHLPSQLATAHYYIHP------YQYQLPPPSSPPPPPE-NLSSPPPPKKQYKLRSLLQ-RRMPRIRPWPRRATRKSPPPPF

A0A6J1FFZ9 extensin-like2.0e-0646.79Show/hide
Query:  MGSLLLAS-HLLSLLIASLSLHLPSQLATAHYY----IHPYQYQLPPPSSPP--------PPPENLSS----PPPPKKQYKLRSLLQRRMPRIRPWPRRA
        MGSL+L+S +L SLLIA LSL LPS+LA    +     +P+QYQ PPP  PP        PPP   +     PPPPK ++K ++    RMP   PW R+ 
Subjt:  MGSLLLAS-HLLSLLIASLSLHLPSQLATAHYY----IHPYQYQLPPPSSPP--------PPPENLSS----PPPPKKQYKLRSLLQRRMPRIRPWPRRA

Query:  TRKSPPPPF
        T  SPPPPF
Subjt:  TRKSPPPPF

A0A6J1JSJ5 extensin-like3.3e-0648.54Show/hide
Query:  MGSLLLAS-HLLSLLIASLSLHLPSQLATAHYY----IHPYQYQLPPP----SSPPPPPENLS--SPPPPKKQYKLRSLLQRRMPRIRPWPRRATRKSPP
        MGSL+LAS +L SLLIA LSL LPS+LA    +     +P++YQ PPP      P PPP   +  +PPPPK ++K ++    RMP   PW R+ T  SPP
Subjt:  MGSLLLAS-HLLSLLIASLSLHLPSQLATAHYY----IHPYQYQLPPP----SSPPPPPENLS--SPPPPKKQYKLRSLLQRRMPRIRPWPRRATRKSPP

Query:  PPF
        PPF
Subjt:  PPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTCTCTATTATTGGCCTCTCACCTTCTATCTCTTCTCATTGCTTCTCTCTCTCTACATCTCCCATCACAATTGGCTACTGCACATTACTACATTCACCCATACCA
ATACCAACTTCCTCCGCCGTCTTCGCCGCCGCCTCCGCCTGAAAATCTCTCGTCTCCGCCGCCACCCAAGAAGCAATACAAATTGAGGTCACTGCTGCAGAGGCGCATGC
CACGCATTAGGCCATGGCCAAGGAGGGCCACCCGTAAATCGCCTCCGCCGCCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTCTCTATTATTGGCCTCTCACCTTCTATCTCTTCTCATTGCTTCTCTCTCTCTACATCTCCCATCACAATTGGCTACTGCACATTACTACATTCACCCATACCA
ATACCAACTTCCTCCGCCGTCTTCGCCGCCGCCTCCGCCTGAAAATCTCTCGTCTCCGCCGCCACCCAAGAAGCAATACAAATTGAGGTCACTGCTGCAGAGGCGCATGC
CACGCATTAGGCCATGGCCAAGGAGGGCCACCCGTAAATCGCCTCCGCCGCCTTTCTAA
Protein sequenceShow/hide protein sequence
MGSLLLASHLLSLLIASLSLHLPSQLATAHYYIHPYQYQLPPPSSPPPPPENLSSPPPPKKQYKLRSLLQRRMPRIRPWPRRATRKSPPPPF