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CmoCh04G025850 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G025850
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNucleolar protein 16, putative
Genome locationCmo_Chr04:18905902..18906336
RNA-Seq ExpressionCmoCh04G025850
SyntenyCmoCh04G025850
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011656615.1 uncharacterized protein LOC105435757 [Cucumis sativus]9.6e-6385.42Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA
        MARQLQ ++HSSQ TAQVGMAG SLLLCAFALFMCASHARKWR RWNACLDYGYEFEDPVIELNQEATVVTTQRVNT      EPENGNDEMFFSREQ+A
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        ++W KNILMGGKCQLPDFSGVILYD NGN VTPA+T  PLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

XP_022959632.1 uncharacterized protein LOC111460648 [Cucurbita moschata]1.1e-77100Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA
        MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

XP_022990795.1 uncharacterized protein LOC111487577 [Cucurbita maxima]4.2e-7496.53Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA
        MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWR RWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNA EPEN NDEMFFSREQRA
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
         VWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQ PLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

XP_023512486.1 uncharacterized protein LOC111777221 [Cucurbita pepo subsp. pepo]7.6e-7698.61Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA
        MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWR RWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNA EPENGNDEMFFSREQRA
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

XP_038886392.1 uncharacterized protein LOC120076591 [Benincasa hispida]1.9e-6688.19Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA
        MARQLQ MMH SQATAQVGMAG SLLLCAFALFMCASHARKWR RWNACLDYGYEFEDPVIELNQEATV+TTQRVN CVVNA E EN NDEMFFSREQ+A
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        A+W+KNILMGGKCQLPDFSGVILYD NGN VTPA+T  PLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

TrEMBL top hitse value%identityAlignment
A0A0A0K8P1 Uncharacterized protein4.6e-6385.42Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA
        MARQLQ ++HSSQ TAQVGMAG SLLLCAFALFMCASHARKWR RWNACLDYGYEFEDPVIELNQEATVVTTQRVNT      EPENGNDEMFFSREQ+A
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        ++W KNILMGGKCQLPDFSGVILYD NGN VTPA+T  PLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

A0A1S3C3W7 uncharacterized protein LOC1034965801.7e-6082.64Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA
        MARQLQ ++HSSQ T QVGMAG SLLLCAFALFMCASHARKWR RWNACLDYGYEFEDPVIELNQEATVVTT +     VNA EPEN N+EMFFSREQ+A
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        ++W KNILMGGKCQLPDFSGVILYD NGNVVTPA+T  PLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

A0A5A7SQ79 Putative Nucleolar protein 161.7e-6082.64Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA
        MARQLQ ++HSSQ T QVGMAG SLLLCAFALFMCASHARKWR RWNACLDYGYEFEDPVIELNQEATVVTT +     VNA EPEN N+EMFFSREQ+A
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        ++W KNILMGGKCQLPDFSGVILYD NGNVVTPA+T  PLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

A0A6J1H530 uncharacterized protein LOC1114606485.1e-78100Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA
        MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

A0A6J1JR28 uncharacterized protein LOC1114875772.0e-7496.53Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA
        MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWR RWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNA EPEN NDEMFFSREQRA
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
         VWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQ PLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49000.1 unknown protein4.2e-0843.33Show/hide
Query:  ENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSGVILYDSNGNVV------TPARTQLP
        +N  +E   + E+   +W++ ILMGGKC+  DFSGVI YDSNG ++      +P  T LP
Subjt:  ENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSGVILYDSNGNVV------TPARTQLP

AT1G71740.1 unknown protein2.1e-2346.51Show/hide
Query:  QVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQ-RAAVWEKNILMGGKCQL
        ++G+A AS+      L   ASH+++   RW AC  YG    +PVI L  + T++    V           NG+  M  S +Q R  +W+KNILMGGKCQL
Subjt:  QVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQ-RAAVWEKNILMGGKCQL

Query:  PDFSGVILYDSNGNVVTPARTQLPLLTWK
        PDFSGVILYD++G VV PA+  LPLLTWK
Subjt:  PDFSGVILYDSNGNVVTPARTQLPLLTWK

AT3G14760.1 unknown protein4.4e-0564.29Show/hide
Query:  VWEKNILMGGKCQLPDFSGVILYDSNGN
        VW++ ILMG KC+LP FSG+ILYD  G+
Subjt:  VWEKNILMGGKCQLPDFSGVILYDSNGN

AT3G18560.1 unknown protein5.2e-0637.5Show/hide
Query:  RVNTCVVNAPEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSGVILYDSNGN
        R N      P  +   + +    E+   VW++ ILMGGKC+  D+SGVI YD +G+
Subjt:  RVNTCVVNAPEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSGVILYDSNGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGGCAACTACAAATGATGATGCATTCTTCACAAGCCACAGCTCAGGTTGGCATGGCTGGTGCGAGCCTTCTCTTGTGTGCTTTTGCATTGTTTATGTGTGCTTC
CCACGCTCGGAAATGGCGTCATCGCTGGAATGCTTGCTTGGATTATGGCTATGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCGACAGTCGTGACTACGCAAC
GAGTGAATACCTGTGTTGTGAATGCCCCCGAGCCGGAGAATGGCAACGACGAGATGTTCTTCAGCAGAGAGCAACGAGCTGCTGTGTGGGAGAAGAACATACTCATGGGT
GGGAAGTGTCAGCTACCGGACTTCTCGGGCGTCATATTATACGACTCCAATGGAAACGTCGTAACCCCTGCTAGAACTCAGCTTCCTCTACTCACCTGGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGGCAACTACAAATGATGATGCATTCTTCACAAGCCACAGCTCAGGTTGGCATGGCTGGTGCGAGCCTTCTCTTGTGTGCTTTTGCATTGTTTATGTGTGCTTC
CCACGCTCGGAAATGGCGTCATCGCTGGAATGCTTGCTTGGATTATGGCTATGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCGACAGTCGTGACTACGCAAC
GAGTGAATACCTGTGTTGTGAATGCCCCCGAGCCGGAGAATGGCAACGACGAGATGTTCTTCAGCAGAGAGCAACGAGCTGCTGTGTGGGAGAAGAACATACTCATGGGT
GGGAAGTGTCAGCTACCGGACTTCTCGGGCGTCATATTATACGACTCCAATGGAAACGTCGTAACCCCTGCTAGAACTCAGCTTCCTCTACTCACCTGGAAGTGA
Protein sequenceShow/hide protein sequence
MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRAAVWEKNILMG
GKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK