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CmoCh04G026830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G026830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionamino acid transporter AVT1C-like
Genome locationCmo_Chr04:19535225..19536326
RNA-Seq ExpressionCmoCh04G026830
SyntenyCmoCh04G026830
Gene Ontology termsGO:0006865 - amino acid transport (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0015293 - symporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602303.1 Amino acid transporter AVT1C, partial [Cucurbita argyrosperma subsp. sororia]1.6e-2269.81Show/hide
Query:  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC------RFYPSISSAS
        MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYR S         P    F SSF       RF P   S S
Subjt:  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC------RFYPSISSAS

Query:  NLLRLI
         +  L+
Subjt:  NLLRLI

KAG7032984.1 Amino acid transporter AVT1B, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-4672.19Show/hide
Query:  MAEIIKNIHEKNRNKESPQKEEEARIDRLHDSLSPGLV--ICV----KSNLRELRIGLKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNG
        M+EIIKNIHEKNRNK     E     DR     S   V  +C      ++LRELRI LKERI TRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNG
Subjt:  MAEIIKNIHEKNRNKESPQKEEEARIDRLHDSLSPGLV--ICV----KSNLRELRIGLKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNG

Query:  EDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSFPPFHLFRSSFCRFYPSISSASNLLRLIVRLE
        EDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSY               RFYPSISSASNLLRLIVRLE
Subjt:  EDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSFPPFHLFRSSFCRFYPSISSASNLLRLIVRLE

XP_022958197.1 amino acid transporter AVT1C-like isoform X1 [Cucurbita moschata]1.9e-3173.77Show/hide
Query:  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC
        LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYR S         P    F SSF 
Subjt:  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC

Query:  ------RFYPSISSASNLLRLI
              RF P   S S +  L+
Subjt:  ------RFYPSISSASNLLRLI

XP_022958205.1 amino acid transporter AVT1C-like isoform X2 [Cucurbita moschata]1.9e-3173.77Show/hide
Query:  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC
        LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYR S         P    F SSF 
Subjt:  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC

Query:  ------RFYPSISSASNLLRLI
              RF P   S S +  L+
Subjt:  ------RFYPSISSASNLLRLI

XP_023539600.1 amino acid transporter AVT1C-like [Cucurbita pepo subsp. pepo]1.6e-3072.13Show/hide
Query:  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC
        LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGED+GNESDSSGLSMNNQNHKQSSSYNTAAWP+SYR S         P    F SSF 
Subjt:  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC

Query:  ------RFYPSISSASNLLRLI
              RF P   S S +  L+
Subjt:  ------RFYPSISSASNLLRLI

TrEMBL top hitse value%identityAlignment
A0A5A7T108 Vacuolar amino acid transporter 1-like1.4e-1663.44Show/hide
Query:  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSF-------PPFHLFRSSFCRFYPSISSAS
        MKNSVSDRSFYIESSDDEDLEKE+DN  D+GNESDSSG S +NQNH Q SSY TAAWP+SYRF+F       P F +F         S+ S S
Subjt:  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSF-------PPFHLFRSSFCRFYPSISSAS

A0A6J1H171 amino acid transporter AVT1C-like isoform X19.3e-3273.77Show/hide
Query:  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC
        LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYR S         P    F SSF 
Subjt:  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC

Query:  ------RFYPSISSASNLLRLI
              RF P   S S +  L+
Subjt:  ------RFYPSISSASNLLRLI

A0A6J1H2S5 amino acid transporter AVT1C-like isoform X29.3e-3273.77Show/hide
Query:  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC
        LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYR S         P    F SSF 
Subjt:  LKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSF--------PPFHLFRSSFC

Query:  ------RFYPSISSASNLLRLI
              RF P   S S +  L+
Subjt:  ------RFYPSISSASNLLRLI

A0A6J1JPR1 amino acid transporter AVT1C-like isoform X28.7e-2277.01Show/hide
Query:  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSFPPFHLFRS-SFCRFYPSISSAS
        MKNSVSDRSFYIESSDDEDLEKELDNGED+GNESDSSGLSMNNQNHKQSSSYNT AWP+SYR S        S S  RF  S  S+S
Subjt:  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSFPPFHLFRS-SFCRFYPSISSAS

A0A6J1JRP7 amino acid transporter AVT1C-like isoform X18.7e-2277.01Show/hide
Query:  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSFPPFHLFRS-SFCRFYPSISSAS
        MKNSVSDRSFYIESSDDEDLEKELDNGED+GNESDSSGLSMNNQNHKQSSSYNT AWP+SYR S        S S  RF  S  S+S
Subjt:  MKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSFPPFHLFRS-SFCRFYPSISSAS

SwissProt top hitse value%identityAlignment
F4JE35 Amino acid transporter AVT1B7.9e-0444.93Show/hide
Query:  MKNSVSDRSFYIESSDDEDLEKEL-DNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSFPPF
        M +S SD+S YIES D +D  K L D+ +D+G  SD+S     NQ+H   +S  + AWP+SYR S   F
Subjt:  MKNSVSDRSFYIESSDDEDLEKEL-DNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSFPPF

Arabidopsis top hitse value%identityAlignment
AT3G54830.1 Transmembrane amino acid transporter family protein5.6e-0544.93Show/hide
Query:  MKNSVSDRSFYIESSDDEDLEKEL-DNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSFPPF
        M +S SD+S YIES D +D  K L D+ +D+G  SD+S     NQ+H   +S  + AWP+SYR S   F
Subjt:  MKNSVSDRSFYIESSDDEDLEKEL-DNGEDNGNESDSSGLSMNNQNHKQSSSYNTAAWPRSYRFSFPPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAAATTATAAAGAATATTCATGAGAAAAACAGAAATAAAGAGAGTCCACAGAAGGAAGAAGAAGCACGGATCGACAGACTTCACGATTCTCTCTCCCCAGGGCT
CGTGATCTGTGTGAAATCGAACTTACGTGAACTTCGGATTGGCTTGAAGGAACGAATTGCAACAAGGAGGAATTTGAATTTTGATAAGAAAATGAAGAACTCTGTGTCGG
ACCGAAGTTTTTACATCGAAAGTTCTGACGACGAAGATCTAGAAAAGGAACTCGACAATGGCGAAGACAATGGAAACGAATCGGATTCTTCCGGCTTATCGATGAATAAT
CAGAATCATAAACAATCAAGTTCTTACAATACCGCCGCTTGGCCTCGAAGTTACAGGTTCAGTTTCCCTCCGTTTCACCTCTTTCGTTCTTCATTCTGCAGATTTTATCC
TTCCATTTCTTCTGCTTCAAATCTCCTTCGCCTAATAGTTAGATTAGAATCATTGGTGATTCACTTGAAAATTGAAATCACGAAAGTAAAATTTCCAGCGGGAATTTTGT
TTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAAATTATAAAGAATATTCATGAGAAAAACAGAAATAAAGAGAGTCCACAGAAGGAAGAAGAAGCACGGATCGACAGACTTCACGATTCTCTCTCCCCAGGGCT
CGTGATCTGTGTGAAATCGAACTTACGTGAACTTCGGATTGGCTTGAAGGAACGAATTGCAACAAGGAGGAATTTGAATTTTGATAAGAAAATGAAGAACTCTGTGTCGG
ACCGAAGTTTTTACATCGAAAGTTCTGACGACGAAGATCTAGAAAAGGAACTCGACAATGGCGAAGACAATGGAAACGAATCGGATTCTTCCGGCTTATCGATGAATAAT
CAGAATCATAAACAATCAAGTTCTTACAATACCGCCGCTTGGCCTCGAAGTTACAGGTTCAGTTTCCCTCCGTTTCACCTCTTTCGTTCTTCATTCTGCAGATTTTATCC
TTCCATTTCTTCTGCTTCAAATCTCCTTCGCCTAATAGTTAGATTAGAATCATTGGTGATTCACTTGAAAATTGAAATCACGAAAGTAAAATTTCCAGCGGGAATTTTGT
TTTTCTAG
Protein sequenceShow/hide protein sequence
MAEIIKNIHEKNRNKESPQKEEEARIDRLHDSLSPGLVICVKSNLRELRIGLKERIATRRNLNFDKKMKNSVSDRSFYIESSDDEDLEKELDNGEDNGNESDSSGLSMNN
QNHKQSSSYNTAAWPRSYRFSFPPFHLFRSSFCRFYPSISSASNLLRLIVRLESLVIHLKIEITKVKFPAGILFF