CuGenDBv2

Gene ID	CmoCh04G027100
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	RNA pseudouridine synthase 5
Genome location	Cmo_Chr04:19683191..19685960
RNA-Seq Expression	CmoCh04G027100
Synteny	CmoCh04G027100
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6578753.1 RNA pseudouridine synthase 5, partial [Cucurbita argyrosperma subsp. sororia]

4.6e-21

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQV---------TEDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHILSRSYQK
        P VAQGLYVATSSGKPA+ KVNVLE DE+G+HTLVQV                +    M   L + G       PN   S      L++        YQ+
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQV---------TEDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHILSRSYQK

Query:  AKKPVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL------RKGSEDARN
          KPVPGD  YYLHAHQLVL+HP+T+EVVKIV PL         SEDA N
Subjt:  AKKPVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL------RKGSEDARN

KAG7016280.1 RNA pseudouridine synthase 5 [Cucurbita argyrosperma subsp. argyrosperma]

4.6e-21

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQV---------TEDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHILSRSYQK
        P VAQGLYVATSSGKPA+ KVNVLE DE+G+HTLVQV                +    M   L + G       PN   S      L++        YQ+
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQV---------TEDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHILSRSYQK

Query:  AKKPVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL------RKGSEDARN
          KPVPGD  YYLHAHQLVL+HP+T+EVVKIV PL         SEDA N
Subjt:  AKKPVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL------RKGSEDARN

XP_008465672.1 PREDICTED: RNA pseudouridine synthase 5 isoform X2 [Cucumis melo]

7.8e-21

47.62

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVTEDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHILSRS------YQKAKK
        P VAQGLYVAT SGKPA  KVNVLE DE+GEHTLVQV          +  P ++ I  +SI               P      ++++S      Y++  K
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVTEDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHILSRS------YQKAKK

Query:  PVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL------RKGSEDARN
        PVPGD  YYLHAHQL+LYHP+TNEVVKIV PL      R  +ED  N
Subjt:  PVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL------RKGSEDARN

XP_022994066.1 RNA pseudouridine synthase 5 [Cucurbita maxima]

3.5e-21

48.65

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIGGNSIWMTPPNP-CPSFFNRHPLLETMHILSRSYQKAKKP
        P VAQGLYVATSSGKPA+ KVNVLE DE+G+HTLVQV           +  + +   LL  G+ +++    P C        L++        YQ+  KP
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIGGNSIWMTPPNP-CPSFFNRHPLLETMHILSRSYQKAKKP

Query:  VPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL------RKGSEDARNGV
        VPGD  YYLHAHQLVL+HP+T+EVVKIV PL         SEDA N V
Subjt:  VPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL------RKGSEDARNGV

XP_038889122.1 RNA pseudouridine synthase 5 isoform X1 [Benincasa hispida]

2.7e-21

50.76

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVTEDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHILSRS------YQKAKK
        P VAQGLYVAT SGKPA+ KVNVLE DE+G+HTLVQV          +  P ++ I  +SI               P      ++ +S      YQ+  K
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVTEDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHILSRS------YQKAKK

Query:  PVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL
        PVPGD  YYLHAHQLVLYHP+TNEVVKIV PL
Subjt:  PVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPT2 RNA pseudouridine synthase 5 isoform X2

3.8e-21

47.62

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVTEDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHILSRS------YQKAKK
        P VAQGLYVAT SGKPA  KVNVLE DE+GEHTLVQV          +  P ++ I  +SI               P      ++++S      Y++  K
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVTEDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHILSRS------YQKAKK

Query:  PVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL------RKGSEDARN
        PVPGD  YYLHAHQL+LYHP+TNEVVKIV PL      R  +ED  N
Subjt:  PVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL------RKGSEDARN

A0A6J1BWA8 RNA pseudouridine synthase 5 isoform X2

4.6e-19

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIGGNSIWMT--PPNPCPSFFNRHPLLETMHILSRSYQKAKK
        P VAQGLYVATSSGKPAF KV+VLE DE+G +TLVQV           +  + +   LL  G+ +++    PN   S        E        YQ+  K
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIGGNSIWMT--PPNPCPSFFNRHPLLETMHILSRSYQKAKK

Query:  PVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL
        PVPGD  YYLHAHQLVL HPRTNE VKI+ PL
Subjt:  PVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL

A0A6J1BWD7 RNA pseudouridine synthase 5 isoform X1

4.6e-19

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIGGNSIWMT--PPNPCPSFFNRHPLLETMHILSRSYQKAKK
        P VAQGLYVATSSGKPAF KV+VLE DE+G +TLVQV           +  + +   LL  G+ +++    PN   S        E        YQ+  K
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIGGNSIWMT--PPNPCPSFFNRHPLLETMHILSRSYQKAKK

Query:  PVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL
        PVPGD  YYLHAHQLVL HPRTNE VKI+ PL
Subjt:  PVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL

A0A6J1FE06 RNA pseudouridine synthase 5 isoform X1

6.5e-21

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQV------TEDFFCLLSCNYMPKRLLIGGNSIWMTPPNP-CPSFFNRHPLLETMHILSRSYQKAK
        P VAQGLYVATSSGKPA+ KVNVLE DE+G+HTLVQV             LS    P    + G+ +++    P C        L++        YQ+  
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQV------TEDFFCLLSCNYMPKRLLIGGNSIWMTPPNP-CPSFFNRHPLLETMHILSRSYQKAK

Query:  KPVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL------RKGSEDARNGV
        KPVPGD  YYLHAHQLVL+HP+T+EVVKI+ PL         SEDA N V
Subjt:  KPVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL------RKGSEDARNGV

A0A6J1JY31 RNA pseudouridine synthase 5

1.7e-21

48.65

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIGGNSIWMTPPNP-CPSFFNRHPLLETMHILSRSYQKAKKP
        P VAQGLYVATSSGKPA+ KVNVLE DE+G+HTLVQV           +  + +   LL  G+ +++    P C        L++        YQ+  KP
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIGGNSIWMTPPNP-CPSFFNRHPLLETMHILSRSYQKAKKP

Query:  VPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL------RKGSEDARNGV
        VPGD  YYLHAHQLVL+HP+T+EVVKIV PL         SEDA N V
Subjt:  VPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL------RKGSEDARNGV

SwissProt top hits

e value

%identity

Alignment

Q0DST9 RNA pseudouridine synthase 5

3.3e-14

39.42

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLL------IGGNSIWMTPPNPCPSFFNRHPL-LETMHILSRSY
        P VA+GLY A SSGKPA  KV VLE  +   HTL+QV           +   Y+   L+      IGG           P F    P            Y
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLL------IGGNSIWMTPPNPCPSFFNRHPL-LETMHILSRSY

Query:  QKAKKPVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL
        ++  +PVPGD  Y+LHAH LVL HP TNE++KI  PL
Subjt:  QKAKKPVPGDYSYYLHAHQLVLYHPRTNEVVKIVEPL

Q5M721 RNA pseudouridine synthase 5

2.4e-09

37.12

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHIL-SRSYQKAKKP
        P VAQGLYVA+  GKPAF KV VLE D     +LV+V           +   YM   L+  G+ +++      P  F+   + +         Y++  + 
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHIL-SRSYQKAKKP

Query:  VPGDYSYYLHAHQLVLYH-PRTNEVVKIVEPL
        VPGD  Y+LHAHQ+ L +   T++VVKIV PL
Subjt:  VPGDYSYYLHAHQLVLYH-PRTNEVVKIVEPL

Arabidopsis top hits

e value

%identity

Alignment

AT3G52260.1 Pseudouridine synthase family protein

1.1e-04

62.16

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQV
        P VAQGLYVA+  GKPAF KV VLE D     +LV+V
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQV

AT3G52260.2 Pseudouridine synthase family protein

1.7e-10

37.12

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHIL-SRSYQKAKKP
        P VAQGLYVA+  GKPAF KV VLE D     +LV+V           +   YM   L+  G+ +++      P  F+   + +         Y++  + 
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHIL-SRSYQKAKKP

Query:  VPGDYSYYLHAHQLVLYH-PRTNEVVKIVEPL
        VPGD  Y+LHAHQ+ L +   T++VVKIV PL
Subjt:  VPGDYSYYLHAHQLVLYH-PRTNEVVKIVEPL

AT3G52260.3 Pseudouridine synthase family protein

7.3e-09

33.33

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Query:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLL---------------IGGNSIWMTPPNPCPSFFNRHPLLET
        P VAQGLYVA+  GKPAF KV VLE D     +LV+V           +   YM   L+                 G+ +++      P  F+   + + 
Subjt:  PEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVT----EDFFCLLSCNYMPKRLL---------------IGGNSIWMTPPNPCPSFFNRHPLLET

Query:  MHIL-SRSYQKAKKPVPGDYSYYLHAHQLVLYH-PRTNEVVKIVEPL
                Y++  + VPGD  Y+LHAHQ+ L +   T++VVKIV PL
Subjt:  MHIL-SRSYQKAKKPVPGDYSYYLHAHQLVLYH-PRTNEVVKIVEPL

Sequences

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CDS sequence

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ATGGATGCAATACCTGAGGTTGCTCAGGGCCTGTACGTTGCTACTTCCTCAGGGAAACCAGCTTTCAGAAAAGTCAATGTTCTTGAGATAGACGAACGAGGAGAACACAC
TTTGGTCCAGGTCACAGAGGACTTCTTCTGTTTGTTGAGTTGCAATTACATGCCCAAGAGACTTCTGATTGGTGGAAATTCAATCTGGATGACCCCGCCAAATCCGTGTC
CATCTTTCTTCAATAGGCATCCTCTATTGGAAACCATGCACATTCTGTCCAGAAGTTACCAAAAGGCTAAGAAACCTGTGCCTGGAGATTATAGCTACTACTTGCACGCA
CATCAATTGGTCCTTTATCACCCAAGAACCAATGAGGTTGTCAAAATCGTTGAGCCACTCCGGAAGGGGTCTGAAGATGCCAGAAATGGAGTGGATGAAAAAAGCATAGC
ATGGATGTCAAAAAGATTAGAATATCAAATTCCAAATGAACAGAAATCAAATGGCGATTCCCAACAGCTCCACGGCAATAAGAACCGTCAAATTCTGCTATCATTCATTG
ACATCAACGAAACTATGATACATGGGGTGCAGCAAAAGAAACCAATTGCTGCTAAGAGAGTGCCTCTGTTGAGAGGCTCTCTCTAA

mRNA sequence

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Protein sequence

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MDAIPEVAQGLYVATSSGKPAFRKVNVLEIDERGEHTLVQVTEDFFCLLSCNYMPKRLLIGGNSIWMTPPNPCPSFFNRHPLLETMHILSRSYQKAKKPVPGDYSYYLHA
HQLVLYHPRTNEVVKIVEPLRKGSEDARNGVDEKSIAWMSKRLEYQIPNEQKSNGDSQQLHGNKNRQILLSFIDINETMIHGVQQKKPIAAKRVPLLRGSL

CmoCh04G027100 (gene) of Cucurbita moschata (Rifu) v1 genome