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CmoCh04G027110 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G027110
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNA pseudouridine synthase 5
Genome locationCmo_Chr04:19686976..19688715
RNA-Seq ExpressionCmoCh04G027110
SyntenyCmoCh04G027110
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602325.1 RNA pseudouridine synthase 5, partial [Cucurbita argyrosperma subsp. sororia]2.3e-3778.07Show/hide
Query:  MLLLIVNETCFASITVAANSERT----------------------VVYRRLPWKESDTPYLLEILYEYVETIALRSRVPLTEKGCILSLFIACEGELQFA
        MLLLIVNETCFASITVAANSERT                      VVYRRLPWKESDTPYL EILYE VETIALRSRVPLTEKGCILSLFIACEGELQFA
Subjt:  MLLLIVNETCFASITVAANSERT----------------------VVYRRLPWKESDTPYLLEILYEYVETIALRSRVPLTEKGCILSLFIACEGELQFA

Query:  AYFADGTFCVGRNR
        AYFADGTFCV RNR
Subjt:  AYFADGTFCVGRNR

KAG7033008.1 hypothetical protein SDJN02_07060, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-1063.89Show/hide
Query:  VVYRRLPWKESDTPYLLEILYEYVETIALRSRVPLTEKGCILSLFIACEGELQFAAYFADGTFCVGRNRCRC
        VVYRRLPWKESDTPYL EILYE VET A     P+T     L L        QFAAYFADGTFCV RNR  C
Subjt:  VVYRRLPWKESDTPYLLEILYEYVETIALRSRVPLTEKGCILSLFIACEGELQFAAYFADGTFCVGRNRCRC

XP_022938426.1 RNA pseudouridine synthase 5 isoform X1 [Cucurbita moschata]1.4e-0739.32Show/hide
Query:  VVYRRLPWKESDTPYLLEILYEYVETIALRS-------------------------------------RVPLTEKGCILSLFIACE----GELQFAAYFA
        VVYRRLPWKE DTPYLLE+LYE  E IAL                                        VP+   G   S  + C        QFAAYFA
Subjt:  VVYRRLPWKESDTPYLLEILYEYVETIALRS-------------------------------------RVPLTEKGCILSLFIACE----GELQFAAYFA

Query:  DGTFCVGRNRCRCPSQG
        DGT CVGRNR     +G
Subjt:  DGTFCVGRNRCRCPSQG

XP_022938428.1 RNA pseudouridine synthase 5 isoform X2 [Cucurbita moschata]1.4e-0739.32Show/hide
Query:  VVYRRLPWKESDTPYLLEILYEYVETIALRS-------------------------------------RVPLTEKGCILSLFIACE----GELQFAAYFA
        VVYRRLPWKE DTPYLLE+LYE  E IAL                                        VP+   G   S  + C        QFAAYFA
Subjt:  VVYRRLPWKESDTPYLLEILYEYVETIALRS-------------------------------------RVPLTEKGCILSLFIACE----GELQFAAYFA

Query:  DGTFCVGRNRCRCPSQG
        DGT CVGRNR     +G
Subjt:  DGTFCVGRNRCRCPSQG

XP_023551339.1 RNA pseudouridine synthase 5 [Cucurbita pepo subsp. pepo]1.4e-0739.32Show/hide
Query:  VVYRRLPWKESDTPYLLEILYEYVETIALRS-------------------------------------RVPLTEKGCILSLFIACE----GELQFAAYFA
        VVYRRLPWKE DTPYLLE+LYE  E IAL                                        VP+   G   S  + C        QFAAYFA
Subjt:  VVYRRLPWKESDTPYLLEILYEYVETIALRS-------------------------------------RVPLTEKGCILSLFIACE----GELQFAAYFA

Query:  DGTFCVGRNRCRCPSQG
        DGT CVGRNR     +G
Subjt:  DGTFCVGRNRCRCPSQG

TrEMBL top hitse value%identityAlignment
A0A6J1FE06 RNA pseudouridine synthase 5 isoform X16.9e-0839.32Show/hide
Query:  VVYRRLPWKESDTPYLLEILYEYVETIALRS-------------------------------------RVPLTEKGCILSLFIACE----GELQFAAYFA
        VVYRRLPWKE DTPYLLE+LYE  E IAL                                        VP+   G   S  + C        QFAAYFA
Subjt:  VVYRRLPWKESDTPYLLEILYEYVETIALRS-------------------------------------RVPLTEKGCILSLFIACE----GELQFAAYFA

Query:  DGTFCVGRNRCRCPSQG
        DGT CVGRNR     +G
Subjt:  DGTFCVGRNRCRCPSQG

A0A6J1FIV3 RNA pseudouridine synthase 5 isoform X26.9e-0839.32Show/hide
Query:  VVYRRLPWKESDTPYLLEILYEYVETIALRS-------------------------------------RVPLTEKGCILSLFIACE----GELQFAAYFA
        VVYRRLPWKE DTPYLLE+LYE  E IAL                                        VP+   G   S  + C        QFAAYFA
Subjt:  VVYRRLPWKESDTPYLLEILYEYVETIALRS-------------------------------------RVPLTEKGCILSLFIACE----GELQFAAYFA

Query:  DGTFCVGRNRCRCPSQG
        DGT CVGRNR     +G
Subjt:  DGTFCVGRNRCRCPSQG

A0A6J1JY31 RNA pseudouridine synthase 58.5e-0636.75Show/hide
Query:  VVYRRLPWKESDTPYLLEILYEYVETIALRS-------------------------------------RVPLTEKGCILSLFIACE----GELQFAAYFA
        VVYRR PWKE DTP LLE+LYE  E IAL                                        VP+   G   S  + C        QFAAYFA
Subjt:  VVYRRLPWKESDTPYLLEILYEYVETIALRS-------------------------------------RVPLTEKGCILSLFIACE----GELQFAAYFA

Query:  DGTFCVGRNRCRCPSQG
        DGT CVGR+R     +G
Subjt:  DGTFCVGRNRCRCPSQG

SwissProt top hitse value%identityAlignment
Q5M721 RNA pseudouridine synthase 57.7e-0468.97Show/hide
Query:  VVYRRLPWKESDTPYLLEILYEYVETIAL
        +VY RLPWKE DTPY LE+LYE  + IAL
Subjt:  VVYRRLPWKESDTPYLLEILYEYVETIAL

Arabidopsis top hitse value%identityAlignment
AT3G52260.1 Pseudouridine synthase family protein5.4e-0568.97Show/hide
Query:  VVYRRLPWKESDTPYLLEILYEYVETIAL
        +VY RLPWKE DTPY LE+LYE  + IAL
Subjt:  VVYRRLPWKESDTPYLLEILYEYVETIAL

AT3G52260.2 Pseudouridine synthase family protein5.4e-0568.97Show/hide
Query:  VVYRRLPWKESDTPYLLEILYEYVETIAL
        +VY RLPWKE DTPY LE+LYE  + IAL
Subjt:  VVYRRLPWKESDTPYLLEILYEYVETIAL

AT3G52260.3 Pseudouridine synthase family protein5.4e-0568.97Show/hide
Query:  VVYRRLPWKESDTPYLLEILYEYVETIAL
        +VY RLPWKE DTPY LE+LYE  + IAL
Subjt:  VVYRRLPWKESDTPYLLEILYEYVETIAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTATTGCTGATCGTTAATGAAACTTGTTTTGCATCGATTACTGTTGCAGCGAATTCAGAACGAACAGTTGTCTATCGTCGGCTGCCATGGAAAGAATCAGATACTCC
GTATTTGCTCGAGATTTTATACGAATACGTCGAAACGATTGCATTAAGAAGCAGAGTCCCTCTGACTGAAAAGGGTTGCATCCTGTCCCTGTTCATCGCCTGTGAAGGGG
AACTTCAGTTTGCTGCATATTTTGCTGATGGAACATTTTGCGTTGGGAGAAACAGATGCAGATGCCCTAGCCAGGGGGAAGGAGGCTTTGGATCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTATTGCTGATCGTTAATGAAACTTGTTTTGCATCGATTACTGTTGCAGCGAATTCAGAACGAACAGTTGTCTATCGTCGGCTGCCATGGAAAGAATCAGATACTCC
GTATTTGCTCGAGATTTTATACGAATACGTCGAAACGATTGCATTAAGAAGCAGAGTCCCTCTGACTGAAAAGGGTTGCATCCTGTCCCTGTTCATCGCCTGTGAAGGGG
AACTTCAGTTTGCTGCATATTTTGCTGATGGAACATTTTGCGTTGGGAGAAACAGATGCAGATGCCCTAGCCAGGGGGAAGGAGGCTTTGGATCCTGA
Protein sequenceShow/hide protein sequence
MLLLIVNETCFASITVAANSERTVVYRRLPWKESDTPYLLEILYEYVETIALRSRVPLTEKGCILSLFIACEGELQFAAYFADGTFCVGRNRCRCPSQGEGGFGS