CuGenDBv2

Gene ID	CmoCh04G027130
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Transcription initiation factor IIF subunit beta
Genome location	Cmo_Chr04:19694890..19699559
RNA-Seq Expression	CmoCh04G027130
Synteny	CmoCh04G027130
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0008168 - methyltransferase activity (molecular function)
InterPro domains	IPR003196 - Transcription initiation factor IIF, beta subunit IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily IPR040450 - TFIIF beta subunit, HTH domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6602326.1 General transcription factor IIF subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

5.6e-152

99.28

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Query:  MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA
        MDGDDKPIDRGSSRKLHSNSST AGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDP+QSNDDDDSSSTEFTMELADTDSGKALRA
Subjt:  MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA

Query:  YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
        YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
Subjt:  YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN

Query:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

XP_008465665.1 PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]

3.3e-136

90.61

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Query:  MDGDDKPIDRGSSRKLHSNSST-AAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALR
        MD D K IDR +SRK  +N++    GTDFLETNKADRAMWLLKCPQVVTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG ALR
Subjt:  MDGDDKPIDRGSSRKLHSNSST-AAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALR

Query:  AYSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
        +Y+LNMSTDFIPMSVFSES+QGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  AYSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
         KRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ EETKPR
Subjt:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

XP_022964851.1 general transcription factor IIF subunit 2-like [Cucurbita moschata]

1.1e-152

100

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Query:  MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA
        MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA
Subjt:  MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA

Query:  YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
        YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
Subjt:  YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN

Query:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

XP_022990432.1 general transcription factor IIF subunit 2-like [Cucurbita maxima]

3.3e-152

99.64

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Query:  MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA
        MDGDDKPIDRGSSRKLHSNSST AGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA
Subjt:  MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA

Query:  YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
        YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
Subjt:  YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN

Query:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

XP_038889594.1 general transcription factor IIF subunit 2-like [Benincasa hispida]

3.3e-136

91.27

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Query:  MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA
        MD D K IDR SSRKL  N+++  GTDFLETNKADRAMWLLKCPQVVTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG  LR+
Subjt:  MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA

Query:  YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
        YSLNMSTDFIPMSVFSES+QGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE 
Subjt:  YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN

Query:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKP
        KRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ EE KP
Subjt:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPB8 Transcription initiation factor IIF subunit beta

1.6e-136

90.61

Show/hide

Query:  MDGDDKPIDRGSSRKLHSNSST-AAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALR
        MD D K IDR +SRK  +N++    GTDFLETNKADRAMWLLKCPQVVTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG ALR
Subjt:  MDGDDKPIDRGSSRKLHSNSST-AAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALR

Query:  AYSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
        +Y+LNMSTDFIPMSVFSES+QGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE
Subjt:  AYSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSE

Query:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
         KRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ EETKPR
Subjt:  NKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

A0A1S3CPE2 Transcription initiation factor IIF subunit beta

1.5e-134

88.69

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Query:  MDGDDKPIDRGSSRKLHSNSST-AAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALR
        MD D K IDR +SRK  +N++    GTDFLETNKADRAMWLLKCPQVVTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG ALR
Subjt:  MDGDDKPIDRGSSRKLHSNSST-AAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALR

Query:  AYSLNMSTDFIPMSVFSESAQ------GKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV
        +Y+LNMSTDFIPMSVFSES+Q      GKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV
Subjt:  AYSLNMSTDFIPMSVFSESAQ------GKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKV

Query:  VSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        VSKGSE KRLRKERGELEKIIF+LFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ EETKPR
Subjt:  VSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

A0A6J1BZ89 Transcription initiation factor IIF subunit beta

4.6e-136

90.65

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Query:  MDGDDKPIDRGSSRKL--HSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKAL
        MD DDKPIDR SSRKL  ++NS +  GTDFLETNKADRAMWLLKCPQ VTRALSNSPD PSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELA TDSG +L
Subjt:  MDGDDKPIDRGSSRKL--HSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKAL

Query:  RAYSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS
        R+YSLNMSTDFIPMSVFSES  GKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDV SFGAAEKKKVVSKGS
Subjt:  RAYSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGS

Query:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        E KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKE+ +ETK R
Subjt:  ENKRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

A0A6J1HK34 Transcription initiation factor IIF subunit beta

5.4e-153

100

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Query:  MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA
        MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA
Subjt:  MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA

Query:  YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
        YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
Subjt:  YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN

Query:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

A0A6J1JIQ3 Transcription initiation factor IIF subunit beta

1.6e-152

99.64

Show/hide

Query:  MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA
        MDGDDKPIDRGSSRKLHSNSST AGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA
Subjt:  MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRA

Query:  YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
        YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN
Subjt:  YSLNMSTDFIPMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSEN

Query:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
        KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR
Subjt:  KRLRKERGELEKIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

SwissProt top hits

e value

%identity

Alignment

P13984 General transcription factor IIF subunit 2

1.1e-14

31.29

Show/hide

Query:  MSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELE
        ++VF+ES+  K ++EG ++ + + +P     ++Y +L R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  + 
Subjt:  MSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELE

Query:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK
         ++F  FE+  Y+  K L+  T QP  Y+KEILK++ V N KG+H+ T+ELKPEY+    E K
Subjt:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK

P41900 General transcription factor IIF subunit 2

6.0e-16

27.69

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Query:  LETNKADRAMWLLKCPQVVTRALSNSPDD-----------PSRPVAKVIVSVDP-LQSNDDDDSSSTEFTMELADTDSGKALRAYSLNMSTDFIPMSVFS
        L+ + A R +WL+K P+ + +    +P +           P +  A+V +S+ P + + D ++   TE  ++++   + + L  +S    +D    S  S
Subjt:  LETNKADRAMWLLKCPQVVTRALSNSPDD-----------PSRPVAKVIVSVDP-LQSNDDDDSSSTEFTMELADTDSGKALRAYSLNMSTDFIPMSVFS

Query:  --ESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKII
          +    K  +EG+I+ K + +P   N   Y KL  E   K+    R++Q ID +   + +P+      +    E+KK     +E K+ R ++  +  ++
Subjt:  --ESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKII

Query:  FRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK
        F  FE+  Y+  K L++ T+QP  Y+KEILKD+C YN K  H+  +ELK EY+    E K
Subjt:  FRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK

Q01750 General transcription factor IIF subunit 2

2.5e-14

26.59

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Query:  KADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELADT-DSGKALRAYSLNMSTDFI-------PMSVFSESAQGK
        K +  +WL+K P+ +++  + +P             V  L+   +   +   FT+  +LA+  D G    + S      F+        ++VF+ES+  K
Subjt:  KADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELADT-DSGKALRAYSLNMSTDFI-------PMSVFSESAQGK

Query:  FTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQP
         ++EG ++ + + +P     ++Y KL R +  +S    R  Q  D V   + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  
Subjt:  FTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQP

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK
        Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK

Q2T9L9 General transcription factor IIF subunit 2

3.3e-14

26.19

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Query:  KADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELADT-DSGKALRAYSLNMSTDFI-------PMSVFSESAQGK
        K +  +WL+K P+ +++  + +P             V  L+   +   +   FT+  +LA+  D G    + S      F+        ++VF+ES+  K
Subjt:  KADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTM--ELADT-DSGKALRAYSLNMSTDFI-------PMSVFSESAQGK

Query:  FTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQP
         ++EG ++ + + +P     ++Y +L R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  +  ++F  FE+  
Subjt:  FTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQP

Query:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK
        Y+  K L+  T QP  Y+K+ILK++ V N KG+H+ T+ELKPEY+    E K
Subjt:  YWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK

Q8R0A0 General transcription factor IIF subunit 2

5.1e-15

31.29

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Query:  MSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELE
        ++VF+ES+  K ++EG ++ + + +P     ++Y KL R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  + 
Subjt:  MSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELE

Query:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK
         ++F  FE+  Y+  K L+  T QP  Y+KEILK++ + N KG+H+ T+ELKPEY+    E K
Subjt:  KIIFRLFERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK

Arabidopsis top hits

e value

%identity

Alignment

AT1G75510.1 Transcription initiation factor IIF, beta subunit

4.7e-64

50.59

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Query:  LETNKADRAMWLLKCPQVVTRA---------LSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRAYSLNMSTDFIPMSVFSESA
        L+  K+DR++WL+KCP VV +A          S +  D    +AK++  VDPL+     D S  EF M +   + G   + Y+LNM TDF+PM  FS+  
Subjt:  LETNKADRAMWLLKCPQVVTRA---------LSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRAYSLNMSTDFIPMSVFSESA

Query:  QGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSENKRLRKERGELEKIIFRL
        QG    EGK+ +KFDMKP+ + ++ Y +LCRERT K+M K+RQIQVID+  G HMRPMPGM  ++S  + EK+K    K +E KR R++RGELE I+F+L
Subjt:  QGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVVS-KGSENKRLRKERGELEKIIFRL

Query:  FERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEE
        FE QP WT KQL+QETDQP Q++KEIL +LCVYN +G +QGTYELKPEYK++ E+
Subjt:  FERQPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEE

AT3G52270.1 Transcription initiation factor IIF, beta subunit

3.7e-77

57.94

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Query:  LETNKADRAMWLLKCPQVVTRALSN--------SPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRAYSLNMSTDFIPMSVFSESAQ
        LET  A+R+M L+K P +V  +L +         PDDP RP AKVI+ VDPL   D+     T+F MELA  DSG   R Y+L+MS DFIPM+VF ES+ 
Subjt:  LETNKADRAMWLLKCPQVVTRALSN--------SPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRAYSLNMSTDFIPMSVFSESAQ

Query:  GKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFER
        GK +VEGKI NKFDM+PH++N++SYG+LCRERT+K M K+RQIQVID+  G HMRPMPGM ++   A EKKK+ ++ SE KR R++R E+E+++F LFER
Subjt:  GKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFER

Query:  QPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEE
        Q  WT + LIQETDQPEQ++K++LKDLC+YNNKG +QGTYELKPEYK+  +E
Subjt:  QPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEE

Sequences

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CDS sequence

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ATGGACGGCGACGACAAACCCATCGACCGTGGCAGTTCCAGAAAACTCCACAGCAATAGCAGCACCGCCGCCGGAACCGACTTCTTGGAGACGAACAAGGCGGACAGAGC
AATGTGGCTATTGAAATGCCCGCAAGTTGTAACTCGCGCCCTTTCCAATTCGCCGGATGATCCTTCTCGTCCGGTCGCTAAGGTCATTGTTTCTGTTGATCCTCTGCAGT
CGAATGACGACGATGATTCTTCATCTACTGAGTTTACCATGGAATTGGCTGACACCGACTCTGGAAAAGCATTAAGGGCCTACTCATTGAATATGTCCACAGATTTCATT
CCGATGTCTGTATTTTCTGAGTCAGCACAAGGGAAGTTTACTGTTGAAGGAAAAATACTGAACAAATTTGACATGAAGCCGCATGATCAAAATCTTGATAGTTACGGGAA
ACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCAGACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCAATGCCAGGGATGGACGTGTTGT
CATTTGGAGCTGCAGAGAAGAAGAAGGTGGTGAGCAAGGGATCGGAAAATAAGAGGCTGAGGAAGGAGCGTGGCGAATTGGAGAAGATCATTTTTAGGCTCTTTGAAAGA
CAGCCATATTGGACCTCGAAACAATTGATTCAAGAGACCGATCAACCTGAACAATATATGAAAGAAATCCTTAAAGATCTCTGTGTCTACAACAACAAGGGTGTTCACCA
AGGAACATATGAGCTGAAGCCAGAGTACAAGGAAACATGTGAGGAAACGAAACCGCGGTAG

mRNA sequence

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TTTTTTCACTTCCGTAGACGTATCATTGCTTTCCTTCTTCTTCTTCTTCTTCCTGTTCTCTCTTCTGCAATGGACGGCGACGACAAACCCATCGACCGTGGCAGTTCCAG
AAAACTCCACAGCAATAGCAGCACCGCCGCCGGAACCGACTTCTTGGAGACGAACAAGGCGGACAGAGCAATGTGGCTATTGAAATGCCCGCAAGTTGTAACTCGCGCCC
TTTCCAATTCGCCGGATGATCCTTCTCGTCCGGTCGCTAAGGTCATTGTTTCTGTTGATCCTCTGCAGTCGAATGACGACGATGATTCTTCATCTACTGAGTTTACCATG
GAATTGGCTGACACCGACTCTGGAAAAGCATTAAGGGCCTACTCATTGAATATGTCCACAGATTTCATTCCGATGTCTGTATTTTCTGAGTCAGCACAAGGGAAGTTTAC
TGTTGAAGGAAAAATACTGAACAAATTTGACATGAAGCCGCATGATCAAAATCTTGATAGTTACGGGAAACTCTGTCGTGAAAGAACTCACAAGTCTATGACCAAAAGCA
GACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCAATGCCAGGGATGGACGTGTTGTCATTTGGAGCTGCAGAGAAGAAGAAGGTGGTGAGCAAGGGA
TCGGAAAATAAGAGGCTGAGGAAGGAGCGTGGCGAATTGGAGAAGATCATTTTTAGGCTCTTTGAAAGACAGCCATATTGGACCTCGAAACAATTGATTCAAGAGACCGA
TCAACCTGAACAATATATGAAAGAAATCCTTAAAGATCTCTGTGTCTACAACAACAAGGGTGTTCACCAAGGAACATATGAGCTGAAGCCAGAGTACAAGGAAACATGTG
AGGAAACGAAACCGCGGTAGGTCGGTTGGTTCAATGATTTTGGTATTTGACTGTCTATTTAGTGCAAGATTTGTGTGTTTTCCTTGGTGTTTCTTTTAGTATAGTATAGG
ATAGGCTTGTAGGTGATTATTTCGTATTGTCGAATTTGTAGAACTCATTAGTGTAAGC

Protein sequence

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MDGDDKPIDRGSSRKLHSNSSTAAGTDFLETNKADRAMWLLKCPQVVTRALSNSPDDPSRPVAKVIVSVDPLQSNDDDDSSSTEFTMELADTDSGKALRAYSLNMSTDFI
PMSVFSESAQGKFTVEGKILNKFDMKPHDQNLDSYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFER
QPYWTSKQLIQETDQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETKPR

CmoCh04G027130 (gene) of Cucurbita moschata (Rifu) v1 genome