; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G028330 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G028330
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionChromo domain-containing protein isoform 1
Genome locationCmo_Chr04:20263607..20264101
RNA-Seq ExpressionCmoCh04G028330
SyntenyCmoCh04G028330
Gene Ontology termsGO:0010190 - cytochrome b6f complex assembly (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458773.1 PREDICTED: uncharacterized protein LOC103498078 [Cucumis melo]4.4e-6480.24Show/hide
Query:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETA
        M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWM+GRRCLQ+A   RKKRKL+RR+ ECDGA AA ET 
Subjt:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETA

Query:  LGLAREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
          +  E+GLPEI PGS     EE+E  GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Subjt:  LGLAREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN

XP_022962836.1 uncharacterized protein LOC111463206 [Cucurbita moschata]7.0e-86100Show/hide
Query:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGL
        MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGL
Subjt:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGL

Query:  AREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
        AREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
Subjt:  AREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN

XP_022989907.1 uncharacterized protein LOC111486958 [Cucurbita maxima]9.5e-8395.86Show/hide
Query:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGL
        MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASET LG 
Subjt:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGL

Query:  AREEGLPEIVPGSV-----EEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
        AREEGLPEIVPGSV     EEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
Subjt:  AREEGLPEIVPGSV-----EEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN

XP_023536558.1 uncharacterized protein LOC111797691 [Cucurbita pepo subsp. pepo]2.0e-8096.34Show/hide
Query:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGL
        MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASET LG 
Subjt:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGL

Query:  AREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
        AREE LPEI+PGS EEEEEEEE VGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
Subjt:  AREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN

XP_038891069.1 uncharacterized protein LOC120080480 [Benincasa hispida]7.3e-6783.83Show/hide
Query:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETA
        M+ESPS PTRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALAL+KLPWM+GRRCLQRA   RKKRKLIRR+ ECDGA AA ET 
Subjt:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETA

Query:  LGLAREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
           A EEGLPEI PGS     EEEE VGNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Subjt:  LGLAREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN

TrEMBL top hitse value%identityAlignment
A0A0A0KR58 Uncharacterized protein1.8e-6379.04Show/hide
Query:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETA
        M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWM+GRRCLQ+A   RKKRKL+ R+ ECDGA AA ET 
Subjt:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETA

Query:  LGLAREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
          +  E+GLPE+ PGS     EE+E  GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Subjt:  LGLAREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN

A0A1S3C8M3 uncharacterized protein LOC1034980782.2e-6480.24Show/hide
Query:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETA
        M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWM+GRRCLQ+A   RKKRKL+RR+ ECDGA AA ET 
Subjt:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETA

Query:  LGLAREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
          +  E+GLPEI PGS     EE+E  GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Subjt:  LGLAREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN

A0A5A7T2E5 Uncharacterized protein2.2e-6480.24Show/hide
Query:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETA
        M+ESPS  TRRRRF VDDG DLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWM+GRRCLQ+A   RKKRKL+RR+ ECDGA AA ET 
Subjt:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRA---RKKRKLIRRKRECDGAAAASETA

Query:  LGLAREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
          +  E+GLPEI PGS     EE+E  GNFSARFEAERIWLQLYQ+GQLGFGRVSFTGNSN WPNSN
Subjt:  LGLAREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN

A0A6J1HEE2 uncharacterized protein LOC1114632063.4e-86100Show/hide
Query:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGL
        MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGL
Subjt:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGL

Query:  AREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
        AREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
Subjt:  AREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN

A0A6J1JH40 uncharacterized protein LOC1114869584.6e-8395.86Show/hide
Query:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGL
        MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASET LG 
Subjt:  MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGL

Query:  AREEGLPEIVPGSV-----EEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
        AREEGLPEIVPGSV     EEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN
Subjt:  AREEGLPEIVPGSV-----EEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01516.1 unknown protein2.8e-2443.87Show/hide
Query:  CSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQR---ARKKRKLIRRKRE------------------C---DGAAAASETALGL
        CSGK CRS  A  +ADCVA+CCCPC+VV+   LA VK+PWMIGR+C+ R   ++K+ K I R+                    C   DG     +    +
Subjt:  CSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQR---ARKKRKLIRRKRE------------------C---DGAAAASETALGL

Query:  AREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTG
         R+  L +    +   +EEEE  +   SAR EAER+WL+LYQ+G LGFGRVSFTG
Subjt:  AREEGLPEIVPGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTG

AT3G11690.1 unknown protein4.2e-0435.29Show/hide
Query:  SPSPPTRRRRFP-----VDDGVDLIDCSGKHCRSCTAGLVADCVAV-CCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIR
        S SP    RR P     +        C G        G  A C AV CCCPC +V+ L LA+ K+P  I RR + R+R++++L++
Subjt:  SPSPPTRRRRFP-----VDDGVDLIDCSGKHCRSCTAGLVADCVAV-CCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIR

AT5G06380.1 unknown protein1.1e-0434.4Show/hide
Query:  GKHCRSCTAGLVADCVAVC-CCPCSVVSFLALALVKLPWMIGRRCLQRARKKR----KLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEEEEEE
        G     C  G  A C A+C C PCSVV+ + LA+ KLP  + RR ++R R+KR    + +   RE  G   +S+ A+        P       EEEEEE+
Subjt:  GKHCRSCTAGLVADCVAVC-CCPCSVVSFLALALVKLPWMIGRRCLQRARKKR----KLIRRKRECDGAAAASETALGLAREEGLPEIVPGSVEEEEEEE

Query:  EGV----GNFSARFEAERIWLQLYQ
        E V        +RF +   W  L Q
Subjt:  EGV----GNFSARFEAERIWLQLYQ

AT5G14690.1 unknown protein5.1e-2642.55Show/hide
Query:  RRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCL---QRARKKRKLI-RRKR--------------------
        RRRR       D + CS K CRS  A  +ADCVA+CCCPC++++ L L LVK+PWMIGRRCL    R +KKR++I RRKR                    
Subjt:  RRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCL---QRARKKRKLI-RRKR--------------------

Query:  ------ECDGAAAASETALGLAREEGLPEIV--PGSVEEEEEEEEGV----------GNFSARFEAERIWLQLYQLGQLGFGRVSFTG
              E  G         G    +    +V   GS+ +EEEEEE               SAR EAER+WL+LYQ+G LGFGRVSFTG
Subjt:  ------ECDGAAAASETALGLAREEGLPEIV--PGSVEEEEEEEEGV----------GNFSARFEAERIWLQLYQLGQLGFGRVSFTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAAGCCCATCTCCACCCACGCGTCGTCGGAGATTCCCCGTCGATGATGGGGTCGATCTAATTGACTGCTCCGGCAAGCATTGCCGGTCTTGCACTGCTGGCTT
GGTGGCTGATTGTGTCGCTGTCTGCTGCTGCCCCTGTTCCGTGGTTAGCTTCTTGGCTCTGGCCCTCGTCAAATTGCCGTGGATGATTGGCCGGCGGTGTCTGCAACGGG
CGAGGAAGAAGAGGAAGTTGATTCGCCGAAAAAGGGAATGCGATGGCGCTGCGGCTGCGTCGGAAACTGCTTTGGGTCTGGCGAGGGAGGAAGGGCTGCCGGAAATTGTG
CCGGGGTCCGTCGAGGAAGAAGAAGAAGAAGAAGAAGGGGTGGGGAATTTTAGTGCGAGATTTGAAGCAGAAAGAATTTGGTTGCAGTTGTATCAACTGGGTCAGTTGGG
TTTTGGAAGAGTTTCTTTCACTGGGAATTCAAATCAATGGCCAAATTCCAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAAGCCCATCTCCACCCACGCGTCGTCGGAGATTCCCCGTCGATGATGGGGTCGATCTAATTGACTGCTCCGGCAAGCATTGCCGGTCTTGCACTGCTGGCTT
GGTGGCTGATTGTGTCGCTGTCTGCTGCTGCCCCTGTTCCGTGGTTAGCTTCTTGGCTCTGGCCCTCGTCAAATTGCCGTGGATGATTGGCCGGCGGTGTCTGCAACGGG
CGAGGAAGAAGAGGAAGTTGATTCGCCGAAAAAGGGAATGCGATGGCGCTGCGGCTGCGTCGGAAACTGCTTTGGGTCTGGCGAGGGAGGAAGGGCTGCCGGAAATTGTG
CCGGGGTCCGTCGAGGAAGAAGAAGAAGAAGAAGAAGGGGTGGGGAATTTTAGTGCGAGATTTGAAGCAGAAAGAATTTGGTTGCAGTTGTATCAACTGGGTCAGTTGGG
TTTTGGAAGAGTTTCTTTCACTGGGAATTCAAATCAATGGCCAAATTCCAATTAA
Protein sequenceShow/hide protein sequence
MEESPSPPTRRRRFPVDDGVDLIDCSGKHCRSCTAGLVADCVAVCCCPCSVVSFLALALVKLPWMIGRRCLQRARKKRKLIRRKRECDGAAAASETALGLAREEGLPEIV
PGSVEEEEEEEEGVGNFSARFEAERIWLQLYQLGQLGFGRVSFTGNSNQWPNSN