; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G028420 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G028420
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNA exonuclease 4
Genome locationCmo_Chr04:20309931..20313103
RNA-Seq ExpressionCmoCh04G028420
SyntenyCmoCh04G028420
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004386 - helicase activity (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR013087 - Zinc finger C2H2-type
IPR013520 - Exonuclease, RNase T/DNA polymerase III
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602442.1 hypothetical protein SDJN03_07675, partial [Cucurbita argyrosperma subsp. sororia]5.0e-19294.74Show/hide
Query:  MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS
        MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNN+FVIRGCKICLAIFESPHTLRLHQERCQLRS
Subjt:  MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS

Query:  PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ
        PNSSQITT FRN GICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRD AMPLKQVQ
Subjt:  PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ

Query:  KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMI--------------RYDIQNGSKDPYEDCVATMRLYMRMRSQVHKIEEYPLA
        KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMI              RYDIQNGSKDPYEDCVATMRLYMRMRSQVHKIEEYPLA
Subjt:  KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMI--------------RYDIQNGSKDPYEDCVATMRLYMRMRSQVHKIEEYPLA

Query:  SDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL
        SDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL
Subjt:  SDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL

KAG7033124.1 RNA exonuclease 4, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-17089.63Show/hide
Query:  MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS
        MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNN                               
Subjt:  MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS

Query:  PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ
           SQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ
Subjt:  PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ

Query:  KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIRYDIQNGSKDPYEDCVATMRLYMRMRSQVHKIEEYPLASDPQNKNNFAIWKQ
        KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIRYDIQNGSKDPYEDCVATMRLYMRMRSQVHKIEEYPLASDPQNKNNFAIWKQ
Subjt:  KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIRYDIQNGSKDPYEDCVATMRLYMRMRSQVHKIEEYPLASDPQNKNNFAIWKQ

Query:  FELERMSPEQMLEVSRSDYYCWCLDSKL
        FELERMSPEQMLEVSRSDYYCWCLDSKL
Subjt:  FELERMSPEQMLEVSRSDYYCWCLDSKL

XP_022961916.1 RNA exonuclease 4-like [Cucurbita moschata]1.0e-19292.39Show/hide
Query:  MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS
        MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS
Subjt:  MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS

Query:  PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ
        PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ
Subjt:  PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ

Query:  KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRM
        KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR                           YDIQNGSKDPYEDCVATMRLYMRM
Subjt:  KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRM

Query:  RSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL
        RSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL
Subjt:  RSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL

XP_022990586.1 RNA exonuclease 4-like [Cucurbita maxima]1.2e-18588.45Show/hide
Query:  MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS
        MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGP PKQECNN+F  RGCKICLAIFESPHTLRLHQERCQLRS
Subjt:  MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS

Query:  PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ
        PN SQI  RFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDE ETIIFSTYVNPTLPITNYRLESTGVGPEY+RD AMPLKQVQ
Subjt:  PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ

Query:  KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRM
        KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLK+LQIEYPPFMIR                           YDIQNG+KDPYEDCVATMRLYMRM
Subjt:  KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRM

Query:  RSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL
        R+QVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLE+SRSDYYCWCLDSKL
Subjt:  RSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL

XP_023543310.1 RNA exonuclease 4-like [Cucurbita pepo subsp. pepo]2.9e-18488.73Show/hide
Query:  MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS
        MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGP PKQECNN+F  RGCKICLAIFESPHTLRLHQERCQLRS
Subjt:  MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS

Query:  PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ
        PNSSQ   RFRNMGI DKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRD AMPLKQV 
Subjt:  PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ

Query:  KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRM
        KKI+DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR                           YDIQN +KDPYEDCVATMRLYMRM
Subjt:  KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRM

Query:  RSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL
        RSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL
Subjt:  RSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL

TrEMBL top hitse value%identityAlignment
A0A2N9IYD2 C2H2-type domain-containing protein1.7e-14073.37Show/hide
Query:  SETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSS
        SETLR+KCAACFRQFNK+EHLVEHMR S+HS HEP C +C KHCRSFESLREHLIGP PKQEC N+F IRGCK CL+I +SP+   +HQERC+  S N+ 
Subjt:  SETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSS

Query:  QITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQ
         +  RF N+GICD L+ DNG  R  + VALA +MVGGG DGSLD+CARVCLIDE+E IIF +YV P +P+TNYR E+TG+ PEY+RD AMPL+QVQKKIQ
Subjt:  QITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQ

Query:  DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIRYDIQNGSKDPYEDCVATMRLYMRMRSQVHKIEEYPLASDPQNKNNFAIWKQFELE
        D LCNGEPMWKIRP V GKARILVGHGL   L  LQ+EYP  MIRYDIQ G +DPYEDCVATMRLYM M+SQVHKIE+YPLASDPQN+NNFA W+Q ELE
Subjt:  DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIRYDIQNGSKDPYEDCVATMRLYMRMRSQVHKIEEYPLASDPQNKNNFAIWKQFELE

Query:  RMSPEQMLEVSRSDYYCWCLDSK
        RM+PEQMLE+SRSDYYCWCLDS+
Subjt:  RMSPEQMLEVSRSDYYCWCLDSK

A0A4Y1R8T1 RNA exonuclease 41.7e-13770.47Show/hide
Query:  SETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSS
        SETLR+KCAAC+RQFNKIEHLVEHMR S+HS HEPTC +C KHCRSFESLREHLIGP PKQEC N+F  RGCK CLAI +SP+ LR+HQ+RCQL   N+ 
Subjt:  SETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSS

Query:  QITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQ
         +  RF N+GI D   ++NG  R  + VALAC+MVGGGSDGSLD+CA+VCLIDE E IIF +YV P LP+TNYR E+TG+ PEY+RD AMPL+QVQKKIQ
Subjt:  QITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQ

Query:  DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR-------------------YDIQNGSKDPYEDCVATMRLYMRMRSQVHKIEEYPL
        D LCNGEPMWKIRP  GGKARILVGHGL   L SLQ+EYP  MIR                   YDIQ G +DPYEDCVATM+LYMRMRSQVHK E YPL
Subjt:  DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR-------------------YDIQNGSKDPYEDCVATMRLYMRMRSQVHKIEEYPL

Query:  ASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSK
        ASDPQN+NNFA W+Q ELERMSPEQMLE SRSDYYCWCLDS+
Subjt:  ASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSK

A0A6J1HBP2 RNA exonuclease 44.9e-19392.39Show/hide
Query:  MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS
        MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS
Subjt:  MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS

Query:  PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ
        PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ
Subjt:  PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ

Query:  KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRM
        KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR                           YDIQNGSKDPYEDCVATMRLYMRM
Subjt:  KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRM

Query:  RSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL
        RSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL
Subjt:  RSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL

A0A6J1JNC8 RNA exonuclease 45.8e-18688.45Show/hide
Query:  MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS
        MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGP PKQECNN+F  RGCKICLAIFESPHTLRLHQERCQLRS
Subjt:  MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRS

Query:  PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ
        PN SQI  RFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDE ETIIFSTYVNPTLPITNYRLESTGVGPEY+RD AMPLKQVQ
Subjt:  PNSSQITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQ

Query:  KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRM
        KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLK+LQIEYPPFMIR                           YDIQNG+KDPYEDCVATMRLYMRM
Subjt:  KKIQDILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRM

Query:  RSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL
        R+QVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLE+SRSDYYCWCLDSKL
Subjt:  RSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL

A0A6P5TII1 RNA exonuclease 43.8e-13769.14Show/hide
Query:  SETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSS
        SETLR+KCAAC+RQFNKIEHLVEHMR S+HS HEPTC +C KHCRSFESLREHLIGP PKQEC N+F  RGCK CLAI +SP+ LR+HQ+RCQL   N+ 
Subjt:  SETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSS

Query:  QITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQ
         +  RF N+GI D   ++NG  R  + VALAC+MVGGGSDGSLD+CA+VCLIDE E IIF +YV P LP+TNYR E+TG+ PEY+RD AMPL+QVQKKIQ
Subjt:  QITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQ

Query:  DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRMRSQV
        D LCNGEPMWKIRP  GGKARILVGHGL   L SLQ+EYP  MIR                           YDIQ G +DPYEDCVATM+LYMRMRSQV
Subjt:  DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRMRSQV

Query:  HKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSK
        HKIE YPLASDPQN+NNFA W+Q ELERMSPEQMLE SRSDYYCWCLDS+
Subjt:  HKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSK

SwissProt top hitse value%identityAlignment
O94375 RNA exonuclease 43.1e-1126.7Show/hide
Query:  KLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIR
        KLT         + +A+ C MVG   D  + + ARV +++ +  +++ TYV P   +T++R   +GV   +MRD A   ++VQ ++  IL N        
Subjt:  KLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIR

Query:  PGVGGKARILVGHGLGDHLKSLQIEYPPFMIR----------------------------YDIQNGSKDPYEDCVATMRLYMRMRSQVHKI
               R+LVGH + + LK L + +P  MIR                             DIQ+G     +D  ATM LY +++ ++ ++
Subjt:  PGVGGKARILVGHGLGDHLKSLQIEYPPFMIR----------------------------YDIQNGSKDPYEDCVATMRLYMRMRSQVHKI

Q4WHF8 RNA exonuclease 41.2e-1027.32Show/hide
Query:  VALACRMVGGGSDGSLD-ICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARILVGH
        VA+ C MVG G +   D   ARV +++ N   ++ +YV P   IT++R   +G+ P++M + A  L+QVQK + +IL                 RILVGH
Subjt:  VALACRMVGGGSDGSLD-ICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARILVGH

Query:  GLGDHLKSLQI-----------EYPPF-----------------MIRYDIQNGSKDPYEDCVATMRLYMRMRSQVHK--IEEYPLASDPQNKNN
         + + L +L +           ++PP+                  +  +IQ+G+    ED  ATM LY R +    +  ++++P+      K N
Subjt:  GLGDHLKSLQI-----------EYPPF-----------------MIRYDIQNGSKDPYEDCVATMRLYMRMRSQVHK--IEEYPLASDPQNKNN

Q6PAQ4 RNA exonuclease 46.3e-1234.17Show/hide
Query:  EAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARILVG
        +A+AL C MVG G  G   I ARV ++++    ++  YV PT P+T+YR   +G+ PE ++ +    + V+K++ ++L               K RILVG
Subjt:  EAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARILVG

Query:  HGLGDHLKSLQIEYPPFMIR
        H L + LK L +++P   IR
Subjt:  HGLGDHLKSLQIEYPPFMIR

Q91560 RNA exonuclease 42.4e-1134.75Show/hide
Query:  VALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARILVGHG
        VA+ C MVG G DG   I ARV +++     ++  YV PT  +T+YR   +G+ PE ++ +  P K VQK++ +IL               + R LVGH 
Subjt:  VALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARILVGHG

Query:  LGDHLKSLQIEYPPFMIR
        + + LK L +++P   IR
Subjt:  LGDHLKSLQIEYPPFMIR

Q9GZR2 RNA exonuclease 45.7e-1333.56Show/hide
Query:  AVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARILVGH
        A+AL C MVG G  G   + ARV ++++    ++  YV PT P+T+YR   +G+ PE ++ +   L+ VQK++ ++L               K RILVGH
Subjt:  AVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIRPGVGGKARILVGH

Query:  GLGDHLKSLQIEYPPFMIRYDIQNGSKDPYEDCVATMRLYMRMRSQ
         L + LK L +++P   IR D Q     P++  V + R  +R+ S+
Subjt:  GLGDHLKSLQIEYPPFMIRYDIQNGSKDPYEDCVATMRLYMRMRSQ

Arabidopsis top hitse value%identityAlignment
AT2G48100.1 Exonuclease family protein2.1e-7140.8Show/hide
Query:  TLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGP--RPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSS
        ++RH+C AC++ FN+ EHLVEHM++S+HSLH+P C +C KHC+SFES+REHL  P    K  C  +F  RGC +CL IFE    L  H+ +C L  P   
Subjt:  TLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGP--RPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSS

Query:  QITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQ
          +T+ RN        S +    R +A+AL C MVGGG+DG++D CA VCL+D++E +IFST+V P LP+T+YR E TG+  E ++D  MPL+ V++++ 
Subjt:  QITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQ

Query:  DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRMRSQV
          LC G+         G    +LVGH L   +  L++EYP  ++R                           Y IQ G  + YEDCV+ MRLY RMR Q 
Subjt:  DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRMRSQV

Query:  HKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLD
        H      + S     N     KQ +LE+M+ E++ + S S+Y CWCLD
Subjt:  HKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLD

AT2G48100.2 Exonuclease family protein2.1e-7140.8Show/hide
Query:  TLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGP--RPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSS
        ++RH+C AC++ FN+ EHLVEHM++S+HSLH+P C +C KHC+SFES+REHL  P    K  C  +F  RGC +CL IFE    L  H+ +C L  P   
Subjt:  TLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGP--RPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSS

Query:  QITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQ
          +T+ RN        S +    R +A+AL C MVGGG+DG++D CA VCL+D++E +IFST+V P LP+T+YR E TG+  E ++D  MPL+ V++++ 
Subjt:  QITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQ

Query:  DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRMRSQV
          LC G+         G    +LVGH L   +  L++EYP  ++R                           Y IQ G  + YEDCV+ MRLY RMR Q 
Subjt:  DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRMRSQV

Query:  HKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLD
        H      + S     N     KQ +LE+M+ E++ + S S+Y CWCLD
Subjt:  HKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLD

AT2G48100.3 Exonuclease family protein2.1e-7140.8Show/hide
Query:  TLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGP--RPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSS
        ++RH+C AC++ FN+ EHLVEHM++S+HSLH+P C +C KHC+SFES+REHL  P    K  C  +F  RGC +CL IFE    L  H+ +C L  P   
Subjt:  TLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGP--RPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSS

Query:  QITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQ
          +T+ RN        S +    R +A+AL C MVGGG+DG++D CA VCL+D++E +IFST+V P LP+T+YR E TG+  E ++D  MPL+ V++++ 
Subjt:  QITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQ

Query:  DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRMRSQV
          LC G+         G    +LVGH L   +  L++EYP  ++R                           Y IQ G  + YEDCV+ MRLY RMR Q 
Subjt:  DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRMRSQV

Query:  HKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLD
        H      + S     N     KQ +LE+M+ E++ + S S+Y CWCLD
Subjt:  HKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLD

AT3G27970.1 Exonuclease family protein1.6e-12761.89Show/hide
Query:  SETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSS
        SETLR+KCAAC+RQFNK+EHLVEHM++S+HS HEPTC +C KHCRSFESLREHLIGP PKQEC N+F +RGC+ C+ I ESP++ R+HQERCQ  S NS 
Subjt:  SETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSS

Query:  QITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQ
         +TTR   +G+ DK   D    R    VAL+C+MVGGGSDGSLD+CARVC+ DE++ +IF TYV P++ +T+YR E+TG+ PE +RD AMPLKQVQ+KIQ
Subjt:  QITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQ

Query:  DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRMRSQV
        + LCNGEPMWKIRP  GGKARILVGHGL   L  LQ+EYP  MIR                           YD+  G +DPYEDCVATMRLY RMR Q 
Subjt:  DILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRMRSQV

Query:  HKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDS
        HKIE YPLA+D QN++N   W+Q E ERMSP++ML +SRSDYYCWCLDS
Subjt:  HKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDS

AT5G40310.1 Exonuclease family protein4.3e-12561.21Show/hide
Query:  ETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSSQ
        +T R+KC  C+RQFNK EHLVEHMR+S+HS+HEPTC +C+KHCRSF+SLREHLIGP PKQEC N+F IRGC+ CL I ESP+  R+HQERCQL S  +S 
Subjt:  ETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSSQ

Query:  ITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQD
        +  R   +G+ +  T D    R    VAL+C+MVGGGSDGSLD+CARVC+ DE+E ++F TYV PT+P+TNYR E TG+ PE +RD AM LK  Q+K+Q+
Subjt:  ITTRFRNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQD

Query:  ILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRMRSQVH
         LCNGEPMWKIRP   GKARILVGHGL +HL SLQ+EY   MIR                           YDI  G +DPYEDCVATMRLY RMR Q H
Subjt:  ILCNGEPMWKIRPGVGGKARILVGHGLGDHLKSLQIEYPPFMIR---------------------------YDIQNGSKDPYEDCVATMRLYMRMRSQVH

Query:  KIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDS
        + E YPLASD QN NNFA W+Q ELERMSPE++L++SRSDYYCWCLDS
Subjt:  KIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCACCCATCTGAAACACTAAGGCACAAATGTGCAGCTTGCTTCAGGCAGTTCAACAAGATAGAGCACTTGGTAGAGCATATGAGACTCTCGTTTCACTCTCTTCA
TGAACCCACTTGCTCCCTTTGCCACAAACACTGCAGATCCTTTGAATCTCTCCGGGAACATCTCATTGGGCCTCGGCCTAAGCAAGAATGCAACAACGTATTCGTCATAA
GAGGATGCAAAATCTGCTTAGCCATCTTTGAGAGTCCTCACACCTTGAGGCTTCACCAAGAAAGATGTCAACTTCGATCTCCAAATTCGAGTCAAATCACGACCCGTTTT
CGCAACATGGGAATTTGTGACAAATTGACGAGCGACAACGGCCGCATGAGGCGCCATGAAGCAGTGGCATTGGCATGCAGAATGGTGGGCGGTGGCAGCGATGGGTCGTT
AGATATATGCGCAAGGGTGTGCCTGATTGACGAAAACGAAACCATCATTTTCTCTACTTATGTCAACCCAACGCTCCCCATCACAAACTATAGGTTGGAGTCCACGGGCG
TTGGTCCAGAATACATGAGGGATCGTGCAATGCCATTGAAGCAAGTTCAGAAGAAAATTCAAGACATCCTGTGCAATGGTGAGCCGATGTGGAAGATTCGACCTGGGGTG
GGAGGAAAAGCAAGGATTCTTGTGGGTCATGGCTTGGGAGATCACCTCAAAAGCTTGCAAATTGAGTATCCACCATTCATGATAAGATACGATATTCAAAACGGAAGCAA
AGATCCTTATGAAGATTGTGTAGCGACCATGAGGTTGTACATGAGAATGAGATCCCAAGTTCACAAGATAGAGGAGTATCCATTGGCTTCTGACCCACAAAACAAGAACA
ATTTTGCAATTTGGAAGCAATTTGAGCTTGAAAGGATGAGCCCAGAACAGATGTTGGAAGTCTCAAGATCTGATTATTATTGCTGGTGCTTGGACTCCAAGCTTTAA
mRNA sequenceShow/hide mRNA sequence
TGTAGGAATAAATAATATGGAGACTTTGATCATATCCTCAGCATGTAGCCCTAGCTGAATATATACAAATATTCTGGTTCCTTTATTATGGGACCCCAACCCTTTCTGGA
TCACTCCATTTCTAACCAGGGGAAGAATAGGGTTATATATTCACCTCAAACTCCCTTTCCCTCTGCAAAATCAAGTGCCATCGCCCGTTCGAGAACCCGAGCCACCGTTA
TAAATACCTTCTCTTTTGCCACCATTTATCATTAGAGTTCGGTTCGATTTGGTTTGGTTTGGTTTAGTACGAGCGTATATGGATCACCCATCTGAAACACTAAGGCACAA
ATGTGCAGCTTGCTTCAGGCAGTTCAACAAGATAGAGCACTTGGTAGAGCATATGAGACTCTCGTTTCACTCTCTTCATGAACCCACTTGCTCCCTTTGCCACAAACACT
GCAGATCCTTTGAATCTCTCCGGGAACATCTCATTGGGCCTCGGCCTAAGCAAGAATGCAACAACGTATTCGTCATAAGAGGATGCAAAATCTGCTTAGCCATCTTTGAG
AGTCCTCACACCTTGAGGCTTCACCAAGAAAGATGTCAACTTCGATCTCCAAATTCGAGTCAAATCACGACCCGTTTTCGCAACATGGGAATTTGTGACAAATTGACGAG
CGACAACGGCCGCATGAGGCGCCATGAAGCAGTGGCATTGGCATGCAGAATGGTGGGCGGTGGCAGCGATGGGTCGTTAGATATATGCGCAAGGGTGTGCCTGATTGACG
AAAACGAAACCATCATTTTCTCTACTTATGTCAACCCAACGCTCCCCATCACAAACTATAGGTTGGAGTCCACGGGCGTTGGTCCAGAATACATGAGGGATCGTGCAATG
CCATTGAAGCAAGTTCAGAAGAAAATTCAAGACATCCTGTGCAATGGTGAGCCGATGTGGAAGATTCGACCTGGGGTGGGAGGAAAAGCAAGGATTCTTGTGGGTCATGG
CTTGGGAGATCACCTCAAAAGCTTGCAAATTGAGTATCCACCATTCATGATAAGATACGATATTCAAAACGGAAGCAAAGATCCTTATGAAGATTGTGTAGCGACCATGA
GGTTGTACATGAGAATGAGATCCCAAGTTCACAAGATAGAGGAGTATCCATTGGCTTCTGACCCACAAAACAAGAACAATTTTGCAATTTGGAAGCAATTTGAGCTTGAA
AGGATGAGCCCAGAACAGATGTTGGAAGTCTCAAGATCTGATTATTATTGCTGGTGCTTGGACTCCAAGCTTTAA
Protein sequenceShow/hide protein sequence
MDHPSETLRHKCAACFRQFNKIEHLVEHMRLSFHSLHEPTCSLCHKHCRSFESLREHLIGPRPKQECNNVFVIRGCKICLAIFESPHTLRLHQERCQLRSPNSSQITTRF
RNMGICDKLTSDNGRMRRHEAVALACRMVGGGSDGSLDICARVCLIDENETIIFSTYVNPTLPITNYRLESTGVGPEYMRDRAMPLKQVQKKIQDILCNGEPMWKIRPGV
GGKARILVGHGLGDHLKSLQIEYPPFMIRYDIQNGSKDPYEDCVATMRLYMRMRSQVHKIEEYPLASDPQNKNNFAIWKQFELERMSPEQMLEVSRSDYYCWCLDSKL