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CmoCh04G028670 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G028670
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionmetalloendoproteinase 2-MMP-like
Genome locationCmo_Chr04:20392547..20394171
RNA-Seq ExpressionCmoCh04G028670
SyntenyCmoCh04G028670
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0030198 - extracellular matrix organization (biological process)
GO:0030574 - collagen catabolic process (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031012 - extracellular matrix (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
GO:0004222 - metalloendopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001818 - Peptidase M10, metallopeptidase
IPR024079 - Metallopeptidase, catalytic domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037429.1 metalloendoproteinase 2-MMP-like [Cucumis melo var. makuwa]7.6e-3085.14Show/hide
Query:  GVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI
        GV+A AF+PT GRLHFDAVE WA GAVPNS+DMETVALHEIGHL+GLHHSSVEG IMWP+IMGGTTKGLHA DI
Subjt:  GVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI

XP_008458713.1 PREDICTED: metalloendoproteinase 2-MMP-like [Cucumis melo]7.6e-3085.14Show/hide
Query:  GVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI
        GV+A AF+PT GRLHFDAVE WA GAVPNS+DMETVALHEIGHL+GLHHSSVEG IMWP+IMGGTTKGLHA DI
Subjt:  GVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI

XP_022993647.1 metalloendoproteinase 2-MMP-like [Cucurbita maxima]5.3e-3185.71Show/hide
Query:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI
        G+ GVIA AFSPT GRLHFDA+E+WAIGAVPNSFDMETVALHEIGHL+GLHHSSVEG IMWPTIM G TKGLHA DI
Subjt:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI

XP_038889209.1 metalloendoproteinase 2-MMP-like [Benincasa hispida]1.7e-2983.12Show/hide
Query:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI
        G+ GVIA AFSPT GRLHFDAVE WAIGAV +S+D+ETVALHEIGHL+GLHHSSVEG IMWPTIMGG TKGLHA DI
Subjt:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI

XP_038891009.1 metalloendoproteinase 2-MMP-like [Benincasa hispida]1.7e-2983.78Show/hide
Query:  GVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI
        GV+A AF+PT GRLHFDAVE WAIGAVPNS+D+ETVALHEIGHL+GL+HSSVEG IMWP+IMGGTTKGLHA DI
Subjt:  GVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI

TrEMBL top hitse value%identityAlignment
A0A0A0KS47 ZnMc domain-containing protein6.9e-2982.43Show/hide
Query:  GVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI
        GV+A AF+PT GRLHFDAVE WA GAVP S+DMETVALHEIGHL+GLHHSSVEG IMWP+IMGG TKGLHA DI
Subjt:  GVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI

A0A1S3C925 metalloendoproteinase 2-MMP-like3.7e-3085.14Show/hide
Query:  GVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI
        GV+A AF+PT GRLHFDAVE WA GAVPNS+DMETVALHEIGHL+GLHHSSVEG IMWP+IMGGTTKGLHA DI
Subjt:  GVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI

A0A5A7T7T1 Metalloendoproteinase 2-MMP-like3.7e-3085.14Show/hide
Query:  GVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI
        GV+A AF+PT GRLHFDAVE WA GAVPNS+DMETVALHEIGHL+GLHHSSVEG IMWP+IMGGTTKGLHA DI
Subjt:  GVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI

A0A6J1FDT9 metalloendoproteinase 2-MMP-like1.4e-2983.12Show/hide
Query:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI
        G+ GVIA AFSPT GRLHFDAVE WAIGA+P+SFDMETVALHEIGHL+GL HSSVEG IMWPTIM G TKGLHA DI
Subjt:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI

A0A6J1JTF5 metalloendoproteinase 2-MMP-like2.5e-3185.71Show/hide
Query:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI
        G+ GVIA AFSPT GRLHFDA+E+WAIGAVPNSFDMETVALHEIGHL+GLHHSSVEG IMWPTIM G TKGLHA DI
Subjt:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI

SwissProt top hitse value%identityAlignment
O04529 Metalloendoproteinase 2-MMP9.3e-1550.65Show/hide
Query:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPNSF-------DMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTK
        G++G +A AFSP  G+ H DA E+W +    +SF       D+E+VA+HEIGHL+GL HSSVE  IM+PTI  G  K
Subjt:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPNSF-------DMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTK

O23507 Metalloendoproteinase 1-MMP6.1e-1446.67Show/hide
Query:  GLIGVIARAFSPTHGRLHFDAVESWAI-----GAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTK
        G++G +A AF+P +GRLH DA E+W +     G+   + D+E+VA HEIGHL+GL HSS E  +M+P++   T K
Subjt:  GLIGVIARAFSPTHGRLHFDAVESWAI-----GAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTK

P29136 Metalloendoproteinase 16.7e-1348.1Show/hide
Query:  GVIARAFSPTHGRLHFDAVESWAIGA------VPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHD
        G++  AF+PT GR HFDA E W          V ++FD+E+VA+HEIGHL+GL HSS    IM+P+I   T K   A D
Subjt:  GVIARAFSPTHGRLHFDAVESWAIGA------VPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHD

Q5XF51 Metalloendoproteinase 3-MMP3.9e-1347.44Show/hide
Query:  GLIGVIARAFSPTHGRLHFDAVESWAIG--------AVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTK
        G +  +A AFSP  G  H D  E+W +         +V  + D+E+VA+HEIGHL+GL HSSVEG IM+PTI  G  K
Subjt:  GLIGVIARAFSPTHGRLHFDAVESWAIG--------AVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTK

Q8GWW6 Metalloendoproteinase 4-MMP6.7e-1348.53Show/hide
Query:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPN----SFDMETVALHEIGHLMGLHHSSVEGVIMWPTI
        G++GV+A  FSP +GRLH D  E+WA+         + D+E+VA+HEIGH++GL HSSV+   M+PT+
Subjt:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPN----SFDMETVALHEIGHLMGLHHSSVEGVIMWPTI

Arabidopsis top hitse value%identityAlignment
AT1G24140.1 Matrixin family protein2.8e-1447.44Show/hide
Query:  GLIGVIARAFSPTHGRLHFDAVESWAIG--------AVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTK
        G +  +A AFSP  G  H D  E+W +         +V  + D+E+VA+HEIGHL+GL HSSVEG IM+PTI  G  K
Subjt:  GLIGVIARAFSPTHGRLHFDAVESWAIG--------AVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTK

AT1G59970.1 Matrixin family protein1.1e-1348.1Show/hide
Query:  GLIGVIARAFSPTHGRLHFDAVESWAIG---------AVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTK
        G +G +A A SP  G LH D  E W I           V    D+E+VA+HEIGHL+GL HSSVE  IM+P I GG  K
Subjt:  GLIGVIARAFSPTHGRLHFDAVESWAIG---------AVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTK

AT1G70170.1 matrix metalloproteinase6.6e-1650.65Show/hide
Query:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPNSF-------DMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTK
        G++G +A AFSP  G+ H DA E+W +    +SF       D+E+VA+HEIGHL+GL HSSVE  IM+PTI  G  K
Subjt:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPNSF-------DMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTK

AT2G45040.1 Matrixin family protein4.8e-1448.53Show/hide
Query:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPN----SFDMETVALHEIGHLMGLHHSSVEGVIMWPTI
        G++GV+A  FSP +GRLH D  E+WA+         + D+E+VA+HEIGH++GL HSSV+   M+PT+
Subjt:  GLIGVIARAFSPTHGRLHFDAVESWAIGAVPN----SFDMETVALHEIGHLMGLHHSSVEGVIMWPTI

AT4G16640.1 Matrixin family protein4.3e-1546.67Show/hide
Query:  GLIGVIARAFSPTHGRLHFDAVESWAI-----GAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTK
        G++G +A AF+P +GRLH DA E+W +     G+   + D+E+VA HEIGHL+GL HSS E  +M+P++   T K
Subjt:  GLIGVIARAFSPTHGRLHFDAVESWAI-----GAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTGATAGGAGTCATAGCTCGTGCCTTTTCGCCCACACATGGACGTTTACATTTTGATGCCGTTGAGTCATGGGCTATTGGTGCGGTTCCTAATTCGTTTGATAT
GGAGACCGTGGCGTTGCATGAGATTGGACACCTTATGGGCCTTCACCACAGCTCAGTAGAAGGGGTTATTATGTGGCCAACCATCATGGGAGGAACTACCAAAGGTTTGC
ATGCCCACGACATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATTGATAGGAGTCATAGCTCGTGCCTTTTCGCCCACACATGGACGTTTACATTTTGATGCCGTTGAGTCATGGGCTATTGGTGCGGTTCCTAATTCGTTTGATAT
GGAGACCGTGGCGTTGCATGAGATTGGACACCTTATGGGCCTTCACCACAGCTCAGTAGAAGGGGTTATTATGTGGCCAACCATCATGGGAGGAACTACCAAAGGTTTGC
ATGCCCACGACATATGA
Protein sequenceShow/hide protein sequence
MGLIGVIARAFSPTHGRLHFDAVESWAIGAVPNSFDMETVALHEIGHLMGLHHSSVEGVIMWPTIMGGTTKGLHAHDI