CuGenDBv2

Gene ID	CmoCh04G028860
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	binding partner of ACD11 1
Genome location	Cmo_Chr04:20540974..20543906
RNA-Seq Expression	CmoCh04G028860
Synteny	CmoCh04G028860
Gene Ontology terms	GO:0050832 - defense response to fungus (biological process) GO:0005634 - nucleus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR034360 - Vip1-like, RNA recognition motif, plant IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022952460.1 binding partner of ACD11 1-like isoform X1 [Cucurbita moschata]

3.1e-140

100

Show/hide

Query:  ELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMT
        ELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMT
Subjt:  ELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMT

Query:  DNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRST
        DNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRST
Subjt:  DNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRST

Query:  AMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL
        AMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL
Subjt:  AMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL

XP_022952469.1 binding partner of ACD11 1-like isoform X2 [Cucurbita moschata]

1.7e-162

100

Show/hide

Query:  MSAKFSDFRFPLGPLSSSSLRASISYPFAEQLWDFHIELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALE
        MSAKFSDFRFPLGPLSSSSLRASISYPFAEQLWDFHIELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALE
Subjt:  MSAKFSDFRFPLGPLSSSSLRASISYPFAEQLWDFHIELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALE

Query:  TAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAK
        TAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAK
Subjt:  TAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAK

Query:  VSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITK
        VSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITK
Subjt:  VSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITK

Query:  L
        L
Subjt:  L

XP_022952477.1 binding partner of ACD11 1-like isoform X3 [Cucurbita moschata]

3.2e-137

100

Show/hide

Query:  MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTS
        MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTS
Subjt:  MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTS

Query:  PMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTG
        PMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTG
Subjt:  PMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTG

Query:  TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL
        TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL
Subjt:  TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL

XP_022991189.1 binding partner of ACD11 1-like isoform X1 [Cucurbita maxima]

2.5e-137

98.11

Show/hide

Query:  ELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMT
        ELGGTMYSGGY AEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWN+PSQMT
Subjt:  ELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMT

Query:  DNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRST
        ++NTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRST
Subjt:  DNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRST

Query:  AMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL
        AMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVS+MLSRASKAAAEVGTRNSKGITKL
Subjt:  AMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL

XP_023513532.1 binding partner of ACD11 1-like [Cucurbita pepo subsp. pepo]

1.2e-136

99.61

Show/hide

Query:  MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTS
        MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTD+NTS
Subjt:  MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTS

Query:  PMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTG
        PMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTG
Subjt:  PMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTG

Query:  TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL
        TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL
Subjt:  TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1GKI7 binding partner of ACD11 1-like isoform X3

1.6e-137

100

Show/hide

Query:  MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTS
        MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTS
Subjt:  MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTS

Query:  PMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTG
        PMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTG
Subjt:  PMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTG

Query:  TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL
        TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL
Subjt:  TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL

A0A6J1GLT3 binding partner of ACD11 1-like isoform X2

8.3e-163

100

Show/hide

Query:  MSAKFSDFRFPLGPLSSSSLRASISYPFAEQLWDFHIELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALE
        MSAKFSDFRFPLGPLSSSSLRASISYPFAEQLWDFHIELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALE
Subjt:  MSAKFSDFRFPLGPLSSSSLRASISYPFAEQLWDFHIELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALE

Query:  TAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAK
        TAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAK
Subjt:  TAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAK

Query:  VSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITK
        VSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITK
Subjt:  VSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITK

Query:  L
        L
Subjt:  L

A0A6J1GLU2 binding partner of ACD11 1-like isoform X1

1.5e-140

100

Show/hide

Query:  ELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMT
        ELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMT
Subjt:  ELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMT

Query:  DNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRST
        DNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRST
Subjt:  DNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRST

Query:  AMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL
        AMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL
Subjt:  AMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL

A0A6J1JS70 binding partner of ACD11 1-like isoform X2

1.2e-134

98.07

Show/hide

Query:  MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTS
        MYSGGY AEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWN+PSQMT++NTS
Subjt:  MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTS

Query:  PMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTG
        PMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTG
Subjt:  PMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTG

Query:  TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL
        TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVS+MLSRASKAAAEVGTRNSKGITKL
Subjt:  TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL

A0A6J1JU47 binding partner of ACD11 1-like isoform X1

1.2e-137

98.11

Show/hide

Query:  ELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMT
        ELGGTMYSGGY AEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWN+PSQMT
Subjt:  ELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMT

Query:  DNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRST
        ++NTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRST
Subjt:  DNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRST

Query:  AMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL
        AMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVS+MLSRASKAAAEVGTRNSKGITKL
Subjt:  AMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL

SwissProt top hits

e value

%identity

Alignment

P87216 Protein vip1

6.8e-05

26.64

Show/hide

Query:  VTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFI-----GRWGTYTDESYNWNNPSQMTDNNTSPMVA
        VT++SP+ TE  + DFFS CG V ++   +SG+   TA + F    A +TA+LL  A +    + I     G   T        +  ++  D   S +++
Subjt:  VTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFI-----GRWGTYTDESYNWNNPSQMTDNNTSPMVA

Query:  EIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKV-SELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTGTAA
        E                     +LS+GY L+   L K+   D S  VS+     + S LS    + +  H   E    +D K+ +SD    T+ +  T  
Subjt:  EIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKV-SELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTGTAA

Query:  VVAMGVAGKAAMAAGTAVVNSSYFSKGAL
          A+  A  A  +AG  V N+    K  L
Subjt:  VVAMGVAGKAAMAAGTAVVNSSYFSKGAL

Q9LFD5 Binding partner of ACD11 1

2.3e-24

31.5

Show/hide

Query:  TAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTSPMVAEI
        + +V +LS  ATE+D+ +FFS  G V+ ++I +S ++  +AYVTF++    ETA+LLSGA I DQ V I                 ++  N + P     
Subjt:  TAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTSPMVAEI

Query:  MHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGM----ETVKYIDEKYHVSDITRSTAMVTGTA
           +      V  A+ VV +ML+KG++L KDA+ KAKAFD+    +++A A V+ L  +IGL+  +  G     E +K +D+ + V++ T+S        
Subjt:  MHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGM----ETVKYIDEKYHVSDITRSTAMVTGTA

Query:  AVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGI
               A +   +AG+AV+ + Y   G  W +   +R ++AA EVG +  + +
Subjt:  AVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGI

Arabidopsis top hits

e value

%identity

Alignment

AT1G14340.1 RNA-binding (RRM/RBD/RNP motifs) family protein

4.8e-62

52.99

Show/hide

Query:  GYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQ-MTDNNTSPMV
        GY  EVT LSP  T ND+ DFFS  G +  ++I+RSG+ ACTAYV F+D+++ ETA+LL+GA ILDQ V I RWG + +E   WN  S+   D + S   
Subjt:  GYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQ-MTDNNTSPMV

Query:  AEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTGTAA
        A+   S +  GEAVT AQ+VVK ML+ G+VL KDAL KAKAFD+S  VSA+A A+VS+L  RIGLTD I TG+E V+  D++YHVSD  +S    T    
Subjt:  AEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTGTAA

Query:  VVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSK
               G+ A AA T+VVNSSYFS GALW+S  L RA+KAA+++GTR S+
Subjt:  VVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSK

AT3G01210.1 RNA-binding (RRM/RBD/RNP motifs) family protein

3.5e-65

56.22

Show/hide

Query:  MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTS
        MY  GY A+VT+LSP+ATE DV+ FFSHCG V+ VEI      A TAYVTFRDA+AL+ A+LLSGA I+DQ V+I  +G Y  ES   NN  Q  D + +
Subjt:  MYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTS

Query:  PMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTG
           ++    A +PGEA+TVAQQVV+TML+KGYVL+KDA+ KAKA D+S + S+  A K++E+S+ +GLT  I + ME V+  DEKYH SD T+S  +VTG
Subjt:  PMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMETVKYIDEKYHVSDITRSTAMVTG

Query:  TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVG
        TAAV A  + GK A AA T+VVNS YF+ GALW SD L RA+KAAA +G
Subjt:  TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVG

AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein

8.2e-30

34.66

Show/hide

Query:  TAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTY--TDESYNWNNPSQMTDNNTSPMVA
        T +V+++S  AT+ D+ +FFS  G + ++E     +    AYVTF+D    ETA+LLSGA I+D  V +     Y  + E+     P    D+N SP   
Subjt:  TAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTY--TDESYNWNNPSQMTDNNTSPMVA

Query:  EIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGM----ETVKYIDEKYHVSDITRSTAMVTG
        +           +  A+ VV +ML+KG++L KDA+ KAK+ D+  Q++++A+AKV+    +IG TD I+TG     E V+ +D+KY VS+ T+S      
Subjt:  EIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGM----ETVKYIDEKYHVSDITRSTAMVTG

Query:  TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTR
             A+  A +    AG+A++ + Y   GA WV+   ++ +KAA EVG +
Subjt:  TAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTR

AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein

2.0e-28

35.02

Show/hide

Query:  TAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTSPMVAEI
        + +V ++S  ATE ++++FFS  G ++H+EI +    +  A+VTF D  ALE A+LLSGA I+DQ V I R   Y           +M DN     + E 
Subjt:  TAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTSPMVAEI

Query:  MHSAYTPGEA-----VTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGM----ETVKYIDEKYHVSDITRSTAM
             T  +      V+ AQ VV T+L+KG  L +DA+ KAKAFD+  Q+ A+A+AKVS    R+GLT+ +  G+    E VK +D+K  VSD T     
Subjt:  MHSAYTPGEA-----VTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGM----ETVKYIDEKYHVSDITRSTAM

Query:  VTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSK
              + A+  A +     G+AV +S Y + GA W S   S+ ++     G++  +
Subjt:  VTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSK

AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein

4.1e-29

34.14

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Query:  TAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTSPMVAEI
        T +V+++S +ATE D+ +FFS  G + ++E     D +  AYVTF+D    ETA+LL+G+ I+D  V +     Y        +   + ++N S      
Subjt:  TAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEILDQCVFIGRWGTYTDESYNWNNPSQMTDNNTSPMVAEI

Query:  MHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTG----METVKYIDEKYHVSDITRSTAMVTGTA
          S +        A+ VV  M+SKG+VL KDA+ KAK+ D+  Q++++A+A+V+    RIG T+ I+TG     E VK +D+K+ V++ T+S        
Subjt:  MHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTG----METVKYIDEKYHVSDITRSTAMVTGTA

Query:  AVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTR
           A+  A +    AG+A++ + Y   GA WV+   +R SKAA EVG +
Subjt:  AVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTR

Sequences

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CDS sequence

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ATGTCGGCTAAGTTTTCAGATTTCAGATTTCCGCTCGGCCCCCTCTCGTCTTCTTCTCTCAGAGCTTCTATCAGTTACCCCTTTGCTGAACAACTCTGGGACTTCCACAT
AGAGCTGGGTGGAACAATGTACTCTGGGGGCTATACTGCTGAAGTTACAAGTTTGTCACCTAAAGCCACGGAGAATGATGTTTATGATTTTTTCTCCCATTGTGGCGCGG
TGGATCATGTAGAAATCCTCAGGTCGGGTGATTATGCGTGTACTGCTTATGTGACTTTCCGTGATGCTTTTGCTCTGGAAACTGCTATATTGCTTAGTGGGGCTGAAATC
TTAGATCAATGTGTGTTCATAGGCCGGTGGGGAACATACACAGATGAGTCATACAACTGGAACAACCCTTCACAAATGACCGACAACAATACGAGCCCAATGGTTGCAGA
AATCATGCATTCTGCATACACACCAGGGGAGGCTGTAACCGTGGCTCAACAAGTTGTCAAAACAATGCTATCAAAGGGATATGTTTTAACCAAAGATGCACTTGTAAAGG
CTAAAGCTTTTGATGATTCTTGTCAAGTCTCAGCTTCTGCAGCAGCCAAAGTTTCTGAGCTTAGCAACAGGATTGGACTCACTGATGCAATTCATACCGGCATGGAAACT
GTTAAATACATCGATGAGAAGTATCACGTTTCCGATATCACCCGATCGACTGCAATGGTTACTGGAACGGCGGCCGTGGTGGCAATGGGGGTGGCGGGAAAAGCGGCGAT
GGCTGCAGGTACGGCTGTAGTAAACAGCAGTTACTTTTCAAAGGGCGCGCTTTGGGTTTCGGATATGTTGAGCCGTGCTTCTAAGGCTGCAGCTGAAGTAGGTACGAGGA
ACAGTAAAGGAATAACAAAACTTTGA

mRNA sequence

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CAAAAAAAAAAAAAAAAAAAAAAAAATGTCGGCTAAGTTTTCAGATTTCAGATTTCCGCTCGGCCCCCTCTCGTCTTCTTCTCTCAGAGCTTCTATCAGTTACCCCTTTG
CTGAACAACTCTGGGACTTCCACATAGAGCTGGGTGGAACAATGTACTCTGGGGGCTATACTGCTGAAGTTACAAGTTTGTCACCTAAAGCCACGGAGAATGATGTTTAT
GATTTTTTCTCCCATTGTGGCGCGGTGGATCATGTAGAAATCCTCAGGTCGGGTGATTATGCGTGTACTGCTTATGTGACTTTCCGTGATGCTTTTGCTCTGGAAACTGC
TATATTGCTTAGTGGGGCTGAAATCTTAGATCAATGTGTGTTCATAGGCCGGTGGGGAACATACACAGATGAGTCATACAACTGGAACAACCCTTCACAAATGACCGACA
ACAATACGAGCCCAATGGTTGCAGAAATCATGCATTCTGCATACACACCAGGGGAGGCTGTAACCGTGGCTCAACAAGTTGTCAAAACAATGCTATCAAAGGGATATGTT
TTAACCAAAGATGCACTTGTAAAGGCTAAAGCTTTTGATGATTCTTGTCAAGTCTCAGCTTCTGCAGCAGCCAAAGTTTCTGAGCTTAGCAACAGGATTGGACTCACTGA
TGCAATTCATACCGGCATGGAAACTGTTAAATACATCGATGAGAAGTATCACGTTTCCGATATCACCCGATCGACTGCAATGGTTACTGGAACGGCGGCCGTGGTGGCAA
TGGGGGTGGCGGGAAAAGCGGCGATGGCTGCAGGTACGGCTGTAGTAAACAGCAGTTACTTTTCAAAGGGCGCGCTTTGGGTTTCGGATATGTTGAGCCGTGCTTCTAAG
GCTGCAGCTGAAGTAGGTACGAGGAACAGTAAAGGAATAACAAAACTTTGAATCAAAACAACTGAAATACATAAATATACTCATGTTTTTTTCTTGTTGTCTGTCACTCA
AATTCAGACTCTTGATGTGCAGCTTGGTATGATTATAAGTAATCATTCCCATGGTCTGTAACCTCGCTCGGGTAAATATGGTTGATACATTGTAAAACATTTGAACGATT
TGTTCTATGTTGGTCATCGTGTTAAATTGCAAATAAGATCATTCAACTTTCGATTCTAATAGTAATAGGTCCCTAA

Protein sequence

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MSAKFSDFRFPLGPLSSSSLRASISYPFAEQLWDFHIELGGTMYSGGYTAEVTSLSPKATENDVYDFFSHCGAVDHVEILRSGDYACTAYVTFRDAFALETAILLSGAEI
LDQCVFIGRWGTYTDESYNWNNPSQMTDNNTSPMVAEIMHSAYTPGEAVTVAQQVVKTMLSKGYVLTKDALVKAKAFDDSCQVSASAAAKVSELSNRIGLTDAIHTGMET
VKYIDEKYHVSDITRSTAMVTGTAAVVAMGVAGKAAMAAGTAVVNSSYFSKGALWVSDMLSRASKAAAEVGTRNSKGITKL

CmoCh04G028860 (gene) of Cucurbita moschata (Rifu) v1 genome