; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G028870 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G028870
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTranscription factor protein
Genome locationCmo_Chr04:20548745..20553197
RNA-Seq ExpressionCmoCh04G028870
SyntenyCmoCh04G028870
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033162.1 Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]2.6e-3598.81Show/hide
Query:  KPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        +PGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  KPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_004151201.2 transcription factor PRE6 [Cucumis sativus]1.3e-3195.06Show/hide
Query:  ASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  ASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_022134204.1 transcription factor PRE6 [Momordica charantia]9.2e-3396.34Show/hide
Query:  GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        G SRISDDQIIEL+SKLR LVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_022952488.1 transcription factor PRE6-like, partial [Cucurbita moschata]2.6e-3598.81Show/hide
Query:  KPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        +PGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  KPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

XP_023548992.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]2.6e-3598.81Show/hide
Query:  KPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        +PGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  KPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

TrEMBL top hitse value%identityAlignment
A0A0A0KXB9 Transcription regulator6.4e-3295.06Show/hide
Query:  ASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  ASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A1S3CB29 transcription factor PRE66.4e-3295.06Show/hide
Query:  ASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  ASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A5A7T970 Transcription factor PRE66.4e-3295.06Show/hide
Query:  ASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  ASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A6J1BY51 transcription factor PRE64.5e-3396.34Show/hide
Query:  GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        G SRISDDQIIEL+SKLR LVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

A0A6J1GKQ6 transcription factor PRE6-like1.3e-3598.81Show/hide
Query:  KPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        +PGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
Subjt:  KPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI61.4e-2367.9Show/hide
Query:  GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        G+SRI+D+QI +L+SKL+ L+PE R R +D+V +S+VLQETCNYIR+LH+EVDDLSERLS+LL+T D  SA+AAIIRSL+M
Subjt:  GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

Q0DUR2 Transcription factor ILI61.4e-2367.9Show/hide
Query:  GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        G+SRI+D+QI +L+SKL+ L+PE R R +D+V +S+VLQETCNYIR+LH+EVDDLSERLS+LL+T D  SA+AAIIRSL+M
Subjt:  GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

Q8GW32 Transcription factor PRE63.8e-2980Show/hide
Query:  GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
        G+SRISDDQI +L+SKL+HL+PE+R RRSDKVSASKVLQETCNYIRNLHREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Subjt:  GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI

Q9FLE9 Transcription factor PRE14.3e-2574.07Show/hide
Query:  ASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        A RISD+Q+I+L+SKLR ++PEI + RRSDK SASKVLQETCNYIRNL+REVD+LSERLSQLL ++D DS EAA+IRSL+M
Subjt:  ASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

Q9LJX1 Transcription factor PRE53.9e-2676.54Show/hide
Query:  ASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        ASRISDDQ+I+L+SKLR  +PEI   RRSDKVSASKVLQETCNYIR LHREVD+LS+RLSQLL ++D DS EAA+IRSL+M
Subjt:  ASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.7e-3080Show/hide
Query:  GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
        G+SRISDDQI +L+SKL+HL+PE+R RRSDKVSASKVLQETCNYIRNLHREVDDLS+RLS+LL++ D +SAEAAIIRSL+
Subjt:  GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 13.7e-2469.88Show/hide
Query:  GASRISDDQIIELISKLRHLVPEIR-HRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ
        G SRIS+DQI +LI KL+ L+PE+R  RRSDKVSA++VLQ+TCNYIRNLHREVDDLSERLS+LL+  ++D+A+AA+IRSL+ Q
Subjt:  GASRISDDQIIELISKLRHLVPEIR-HRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.8e-2776.54Show/hide
Query:  ASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        ASRISDDQ+I+L+SKLR  +PEI   RRSDKVSASKVLQETCNYIR LHREVD+LS+RLSQLL ++D DS EAA+IRSL+M
Subjt:  ASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM

AT5G15160.1 BANQUO 21.7e-2472.5Show/hide
Query:  ASRISDDQIIELISKLRHLVPEIR-HRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI
        +SRISDDQI +LISKLR  +PEIR +RRS+ VSASKVLQETCNYIRNL++E DDLS+RL+QLL +ID +S +AA+IRSLI
Subjt:  ASRISDDQIIELISKLRHLVPEIR-HRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLI

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein3.1e-2674.07Show/hide
Query:  ASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM
        A RISD+Q+I+L+SKLR ++PEI + RRSDK SASKVLQETCNYIRNL+REVD+LSERLSQLL ++D DS EAA+IRSL+M
Subjt:  ASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACGAATGGTTGGAGAGGAAAACGAAACATTCATTATAAAACCCGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACAC
CTTGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGAC
CTAAGTGAAAGGCTCTCTCAGCTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTACGAATGGTTGGAGAGGAAAACGAAACATTCATTATAAAACCCGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACAC
CTTGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGAC
CTAAGTGAAAGGCTCTCTCAGCTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAGGGAAAGAACAAGAACAAG
AACCAGGCAGTTGGGTTTGGTAATGCTATATATATATATAAATATATAAATATATATTTTTATAATATAAGATATGATGTTACTATGTTATTTATATGGGTTTTT
GATATTCCCTTTTCTAGGTTTTTGGTGGCTTAGATGAAAAAAAGGGAAATTTAAAAAAGGGTGTATTTTTCCATGAAAAGAGAAGCTTCCCTTTTATTATTATTA
TAGGGATGTAACCAAAATGTATAATAAAAGGAGTTGCATTAGCAAACCCTTTTATTATTTCTATAAAGTTGTACAAATACACCCAAAAAATGTACCATCTTCTCG
CTTTTATTTGAGAGAGAGAGAGAGAAATTAATATCATCAATTTAGCTTTTC
Protein sequenceShow/hide protein sequence
MLRMVGEENETFIIKPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ