; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh04G030050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G030050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCmo_Chr04:21143431..21145418
RNA-Seq ExpressionCmoCh04G030050
SyntenyCmoCh04G030050
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602597.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]3.9e-3592.68Show/hide
Query:  MEQLEMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLLHIRK
        MEQLE EHYSCVVDLL RVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRV GNAELGELASQEMLYFRAKNSVTYVLL +R+
Subjt:  MEQLEMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLLHIRK

XP_011656423.1 putative pentatricopeptide repeat-containing protein At3g25970 [Cucumis sativus]1.3e-2577.03Show/hide
Query:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        EMEHY+C+VDLL RVGHLN AMEF+S MP+EPNEMVWQTLLG CRV GN ELGELA+Q++L F+A+NS TYVLL
Subjt:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

XP_022134356.1 pentatricopeptide repeat-containing protein At2g33680-like [Momordica charantia]4.0e-2475.68Show/hide
Query:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        EMEHYSC+VDLL RVG LN A+EF+  MPIEPNEMVWQTLLG CRV GN ELGELA+Q++L F+A+NS TYVLL
Subjt:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

XP_022993736.1 pentatricopeptide repeat-containing protein At2g27610-like [Cucurbita maxima]6.9e-2476.71Show/hide
Query:  MEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        MEHYSC+VDLL RVG LN AMEF+S MPIEPNEMVWQTLLG CRV GN ELGELA+Q++  F+A+NS TYVLL
Subjt:  MEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

XP_038884632.1 pentatricopeptide repeat-containing protein At3g16610-like [Benincasa hispida]4.0e-2472.97Show/hide
Query:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        EMEHYSC+VD+L RVGHLN AMEF+S MP+EPNEMVWQTLLG CR+ GN ELGELA+Q++L  +A+NS T+VLL
Subjt:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

TrEMBL top hitse value%identityAlignment
A0A0A0KBQ4 Uncharacterized protein6.1e-2677.03Show/hide
Query:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        EMEHY+C+VDLL RVGHLN AMEF+S MP+EPNEMVWQTLLG CRV GN ELGELA+Q++L F+A+NS TYVLL
Subjt:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

A0A5A7UEQ9 Pentatricopeptide repeat-containing protein3.3e-2474.32Show/hide
Query:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        EMEHY+C+VDLL RVG LN AM F+S MP+EPNEMVWQTLLG CRV GN ELGELA+Q++L F+A+NS TYVLL
Subjt:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

A0A5D3C2B1 Pentatricopeptide repeat-containing protein3.3e-2474.32Show/hide
Query:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        EMEHY+C+VDLL RVG LN AM F+S MP+EPNEMVWQTLLG CRV GN ELGELA+Q++L F+A+NS TYVLL
Subjt:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

A0A6J1BXL8 pentatricopeptide repeat-containing protein At2g33680-like2.0e-2475.68Show/hide
Query:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        EMEHYSC+VDLL RVG LN A+EF+  MPIEPNEMVWQTLLG CRV GN ELGELA+Q++L F+A+NS TYVLL
Subjt:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

A0A6J1JX63 pentatricopeptide repeat-containing protein At2g27610-like3.3e-2476.71Show/hide
Query:  MEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        MEHYSC+VDLL RVG LN AMEF+S MPIEPNEMVWQTLLG CRV GN ELGELA+Q++  F+A+NS TYVLL
Subjt:  MEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

SwissProt top hitse value%identityAlignment
P0C898 Putative pentatricopeptide repeat-containing protein At3g151303.6e-1545.98Show/hide
Query:  MEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLLHIRKNNDSGYGNDK
        +EHY+CVVDLL R G L  A   + TMPI+PN  +WQTLL  CRV G+ ELG+   + +L   AKN   YV++       +GY N++
Subjt:  MEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLLHIRKNNDSGYGNDK

Q5G1T1 Pentatricopeptide repeat-containing protein At3g49170, chloroplastic7.2e-1648.65Show/hide
Query:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        +MEHY+C+VDLLCR G L  A EF++TMP + + +VW+T LG CRV  N ELG+LA++++L         Y+ L
Subjt:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

Q9CAY1 Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial1.0e-1448.61Show/hide
Query:  EHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        EHYSC+VDLL R G L+ AMEF+ +MP+EP+  VW  LLG C++  N ++ ELA  +++ F   N   YVL+
Subjt:  EHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

Q9LXF2 Pentatricopeptide repeat-containing protein At5g153002.1e-1550.68Show/hide
Query:  MEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        ++HY C+VD+L R G L  A  FV +M IEPN +VW+TLLG C++ GN ELG+ A++++L  R   S  YVLL
Subjt:  MEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

Q9SVP7 Pentatricopeptide repeat-containing protein At4g136504.7e-1551.39Show/hide
Query:  EHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        EHY CVVD+L R G L+ A EF+  MPI+P+ +VW+TLL  C V  N E+GE A+  +L    ++S TYVLL
Subjt:  EHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

Arabidopsis top hitse value%identityAlignment
AT1G31920.1 Tetratricopeptide repeat (TPR)-like superfamily protein7.4e-1648.61Show/hide
Query:  EHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        EHY C+VDLL R G L  A+E + ++PIE N+++W+T L  CRVR N ELG++A+QE+L   + N   Y+L+
Subjt:  EHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

AT3G15130.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.5e-1645.98Show/hide
Query:  MEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLLHIRKNNDSGYGNDK
        +EHY+CVVDLL R G L  A   + TMPI+PN  +WQTLL  CRV G+ ELG+   + +L   AKN   YV++       +GY N++
Subjt:  MEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLLHIRKNNDSGYGNDK

AT3G49170.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.1e-1748.65Show/hide
Query:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        +MEHY+C+VDLLCR G L  A EF++TMP + + +VW+T LG CRV  N ELG+LA++++L         Y+ L
Subjt:  EMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

AT4G13650.1 Pentatricopeptide repeat (PPR) superfamily protein3.3e-1651.39Show/hide
Query:  EHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        EHY CVVD+L R G L+ A EF+  MPI+P+ +VW+TLL  C V  N E+GE A+  +L    ++S TYVLL
Subjt:  EHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL

AT5G15300.1 Pentatricopeptide repeat (PPR) superfamily protein1.5e-1650.68Show/hide
Query:  MEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL
        ++HY C+VD+L R G L  A  FV +M IEPN +VW+TLLG C++ GN ELG+ A++++L  R   S  YVLL
Subjt:  MEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCAGTTAGAGATGGAGCATTATTCCTGTGTTGTTGATCTCTTATGTCGCGTGGGACATCTAAACTATGCAATGGAGTTTGTAAGCACGATGCCCATAGAGCCCAA
TGAAATGGTTTGGCAGACCTTGTTGGGAACATGTAGGGTTCGTGGTAATGCTGAATTGGGAGAACTTGCTTCTCAGGAGATGCTTTATTTTAGAGCAAAAAACTCAGTTA
CCTATGTTCTTTTGCATATAAGGAAGAATAACGATTCGGGTTATGGAAATGATAAAAAGCGCTACGGATCAATGCTCGAGCTGACTTTGGAGCAAATGGAGCAGAATTTT
TCTGAAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCAGTTAGAGATGGAGCATTATTCCTGTGTTGTTGATCTCTTATGTCGCGTGGGACATCTAAACTATGCAATGGAGTTTGTAAGCACGATGCCCATAGAGCCCAA
TGAAATGGTTTGGCAGACCTTGTTGGGAACATGTAGGGTTCGTGGTAATGCTGAATTGGGAGAACTTGCTTCTCAGGAGATGCTTTATTTTAGAGCAAAAAACTCAGTTA
CCTATGTTCTTTTGCATATAAGGAAGAATAACGATTCGGGTTATGGAAATGATAAAAAGCGCTACGGATCAATGCTCGAGCTGACTTTGGAGCAAATGGAGCAGAATTTT
TCTGAAGATTAA
Protein sequenceShow/hide protein sequence
MEQLEMEHYSCVVDLLCRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRVRGNAELGELASQEMLYFRAKNSVTYVLLHIRKNNDSGYGNDKKRYGSMLELTLEQMEQNF
SED